Lcy03g001900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g001900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr03: 6568368 .. 6569096 (-)
RNA-Seq Expression	Lcy03g001900
Synteny	Lcy03g001900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCATGGAGGCTAGAATGAATGGAAAAGAAAAAGATCATTTTACTGATGATGAAAAAAATGATGGAGATGAAAATCAAGGAGAAGAAGGAAATGAAAAGGGAGATGGAGAAGAATTTGGGGGAAAAGAAAATGAGCAAGAAGGAGTAAATGAAAAGGGTGATGGAGAACATGGAAGAATGGGGGACCAACTTGAGTATGATACTCTTAATACACAAGTTCTTCAAGAAGTGGAACAAATTGAGCAACAAGTCAATAGTGCTAAGGTATGGTATTTAATTTATTTTCTTATGCTATATGATATGGACTAGTAGTATTCTTCTGTGCATGTATTAGAGAAAACAAAAAATGAATGAAGGCTTCAGTACGTTCTCCGAATATGATGGTTCAACCATATATATTGATGCGGTAACATGCTAGCTAAAAATTTCATTTTGGAATTTGTATTCTAGTGCGTATGGACTGAATTTATTACAGGATGTTGTTATAACTTAAATCTCTTTATGTTTGTGTAGCTTAAAGGTAAAGGACCTTTTGAAGATGGACCTAAGAAGTCTGACTTAGGAGGGAGGCAGAGGGAAAGACAAGCTGTTCTACCATCAAAGTACGATAGGTCTCCTTATACTTCAAAGTTTGGATCGACTGAGGAGAAAAAGAAATCAGAAAATGTTATCAACACCCAAGACTTCAATGGCCCAACCTTCAAGATAATGTCACAATTATAG

mRNA sequence

ATGAAATCCATGGAGGCTAGAATGAATGGAAAAGAAAAAGATCATTTTACTGATGATGAAAAAAATGATGGAGATGAAAATCAAGGAGAAGAAGGAAATGAAAAGGGAGATGGAGAAGAATTTGGGGGAAAAGAAAATGAGCAAGAAGGAGTAAATGAAAAGGGTGATGGAGAACATGGAAGAATGGGGGACCAACTTGAGTATGATACTCTTAATACACAAGTTCTTCAAGAAGTGGAACAAATTGAGCAACAAGTCAATAGTGCTAAGCTTAAAGGTAAAGGACCTTTTGAAGATGGACCTAAGAAGTCTGACTTAGGAGGGAGGCAGAGGGAAAGACAAGCTGTTCTACCATCAAAGTACGATAGGTCTCCTTATACTTCAAAGTTTGGATCGACTGAGGAGAAAAAGAAATCAGAAAATGTTATCAACACCCAAGACTTCAATGGCCCAACCTTCAAGATAATGTCACAATTATAG

Coding sequence (CDS)

ATGAAATCCATGGAGGCTAGAATGAATGGAAAAGAAAAAGATCATTTTACTGATGATGAAAAAAATGATGGAGATGAAAATCAAGGAGAAGAAGGAAATGAAAAGGGAGATGGAGAAGAATTTGGGGGAAAAGAAAATGAGCAAGAAGGAGTAAATGAAAAGGGTGATGGAGAACATGGAAGAATGGGGGACCAACTTGAGTATGATACTCTTAATACACAAGTTCTTCAAGAAGTGGAACAAATTGAGCAACAAGTCAATAGTGCTAAGCTTAAAGGTAAAGGACCTTTTGAAGATGGACCTAAGAAGTCTGACTTAGGAGGGAGGCAGAGGGAAAGACAAGCTGTTCTACCATCAAAGTACGATAGGTCTCCTTATACTTCAAAGTTTGGATCGACTGAGGAGAAAAAGAAATCAGAAAATGTTATCAACACCCAAGACTTCAATGGCCCAACCTTCAAGATAATGTCACAATTATAG

Protein sequence

MKSMEARMNGKEKDHFTDDEKNDGDENQGEEGNEKGDGEEFGGKENEQEGVNEKGDGEHGRMGDQLEYDTLNTQVLQEVEQIEQQVNSAKLKGKGPFEDGPKKSDLGGRQRERQAVLPSKYDRSPYTSKFGSTEEKKKSENVINTQDFNGPTFKIMSQL

Homology

The following BLAST results are available for this feature:

BLAST of Lcy03g001900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g001900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g001900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g001900 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g001900.1	Lcy03g001900.1	mRNA