Lcy03g001630 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g001630
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr03: 5505030 .. 5506172 (-)
RNA-Seq ExpressionLcy03g001630
SyntenyLcy03g001630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGAGGTTCATTCTCTCAATATTAAGGTACTCACTGTCTCTGTGCTTTCTACCTTATTGTGTTCTATTGCCAATGTGTTCAAGTTTTGAAATATTTCATTTTGTGTTATCATTAACCCTTACAAAGATTTTTTTTTAATAAGAAAAAAAAAGAAAGAAAAACAATAGGTAAGAGTTGAAGAAATATTAGAAATGGTAAGAACCGTGGGATAAAAGAATCGACCATTAGTTGAATTTTGTGTTATCATTAACCCTTCTAGTAAAACTGCTTCCCATTTTGGCTTACTGTGTGAATGTCAAATATGATAGAAATCCAACTTACTACCGCATCTATCACCTTATTATTCGGTCGTTTGAAATGAAGATTTCATTGCTATGATATCATCGAGCGAATTTTAATTAAACATAGCTTTTTTATTATGTACATCATTATATTAACATTTTTTATTACTGCAAACACATCATCCATAAGAAAATTAACTTATTATCAATGATTTTATATGATCATTTTTTTCCTAAAGCACTACATGAATAATTAGTATGAATGTTTCTTTTTTATTTTTAATAAAAGATACTTATAAAATTTTCTTAATAACAAATTTGAACCAATAGAAAATATTCATAATAATTATTCATAGAAACAAGTCTCATTAATTTGATCAGTTTTCTTTAAGTTGTCTTATTTAGGTATATGGTAACAAATGTTTTTTGCACAAAGTTCTGAAGCAATTAAAGTTTTATTTTGTATATCATAGTTACATGGAAAATGATGAGGAGATGATAGCAATCTTGACAGCCATATGCACCACACAACAGACACTCACGCTAGTTGCATTAGCTGGCTCGTTACTCGACGGAAGAAGATCCTATTCATCAAATATGATAGAAATGATTCGATCGAATATGGAAAAACAAAACGTTGAGCTCGAGAAGATTGCATCGTGGCCTAAGACGAAGGACGAGAGGGCGAAGGCTAGGAGGAAAAAAGTTATTGAGGAGCTTCTAGCAATGCCTGAATTGGAATTGAAGGATAAGTTCAAGCTTTTTACCATCTTAGATATGCAAGAGATTAACCATTATCTCAATCTCCCACCTCATTGGAAATATGACTATTGCATGCTTCTCTTGGGAAGATGCAAATGA

mRNA sequence

TTGGAGGTTCATTCTCTCAATATTAAGTTACATGGAAAATGATGAGGAGATGATAGCAATCTTGACAGCCATATGCACCACACAACAGACACTCACGCTAGTTGCATTAGCTGGCTCGTTACTCGACGGAAGAAGATCCTATTCATCAAATATGATAGAAATGATTCGATCGAATATGGAAAAACAAAACGTTGAGCTCGAGAAGATTGCATCGTGGCCTAAGACGAAGGACGAGAGGGCGAAGGCTAGGAGGAAAAAAGTTATTGAGGAGCTTCTAGCAATGCCTGAATTGGAATTGAAGGATAAGTTCAAGCTTTTTACCATCTTAGATATGCAAGAGATTAACCATTATCTCAATCTCCCACCTCATTGGAAATATGACTATTGCATGCTTCTCTTGGGAAGATGCAAATGA

Coding sequence (CDS)

ATGGAAAATGATGAGGAGATGATAGCAATCTTGACAGCCATATGCACCACACAACAGACACTCACGCTAGTTGCATTAGCTGGCTCGTTACTCGACGGAAGAAGATCCTATTCATCAAATATGATAGAAATGATTCGATCGAATATGGAAAAACAAAACGTTGAGCTCGAGAAGATTGCATCGTGGCCTAAGACGAAGGACGAGAGGGCGAAGGCTAGGAGGAAAAAAGTTATTGAGGAGCTTCTAGCAATGCCTGAATTGGAATTGAAGGATAAGTTCAAGCTTTTTACCATCTTAGATATGCAAGAGATTAACCATTATCTCAATCTCCCACCTCATTGGAAATATGACTATTGCATGCTTCTCTTGGGAAGATGCAAATGA

Protein sequence

MENDEEMIAILTAICTTQQTLTLVALAGSLLDGRRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKFKLFTILDMQEINHYLNLPPHWKYDYCMLLLGRCK
Homology
[Close]
BLAST of Lcy03g001630 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 0 

Query: 22  TLVALAGSLLDGRRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEEL 81
           T+   +G     R  Y+S M++++R+NM  Q   LEK+A+WP  K+E+  ARRK V ++L
Sbjct: 111 TIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQL 170

Query: 82  LAMPELELKDKFKLFTIL--DMQEINHYLNLPPHWKYDYCMLLLGR 126
             +P LE  D  +L  IL  ++++   +L +P  +K  +CM LLG+
Sbjct: 171 KQIPNLEANDYVRLVGILMTNVKKSISFLEVPIEFKKMFCMQLLGK 216

[Close]
BLAST of Lcy03g001630 vs. ExPASy TrEMBL
Match: A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 31/92 (33.70%), Postives = 59/92 (64.13%), Query Frame = 0 

Query: 34  RRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKF 93
           R  +S++  ++IR+ +E +N +L  IA WP  + + A   R++V+ +L A+PEL L D+ 
Sbjct: 229 RAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRC 288

Query: 94  KLFTIL--DMQEINHYLNLPPHWKYDYCMLLL 124
           +L  IL  ++ ++  +L++P + KY YC ++L
Sbjct: 289 RLMRILMRNVDDMKAFLDVPNNMKYPYCSIIL 320

[Close]
BLAST of Lcy03g001630 vs. ExPASy TrEMBL
Match: A0A5A7U9V6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004400 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = 0 

Query: 34  RRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKF 93
           R  ++++  +++R+ +E  N +L +IA WP  + + A   R++++  L A+PEL L D+ 
Sbjct: 207 RPGHATDSGDIVRTPIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRC 266

Query: 94  KLFTIL--DMQEINHYLNLPPHWKYDYCMLLL 124
           +L  IL  ++ ++  +L +P H KY YC L+L
Sbjct: 267 RLMRILMRNVDDMKSFLEVPDHMKYPYCSLIL 298

[Close]
BLAST of Lcy03g001630 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = 0 

Query: 34  RRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKF 93
           R  ++++  +++R+ +E  N +L +IA WP  + + A   R++++  L A+PEL L D+ 
Sbjct: 207 RPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRC 266

Query: 94  KLFTIL--DMQEINHYLNLPPHWKYDYCMLLL 124
           +L  IL  ++ ++  +L +P H KY YC L+L
Sbjct: 267 RLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

[Close]
BLAST of Lcy03g001630 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = 0 

Query: 34  RRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKF 93
           R  ++++  +++R+ +E  N +L +IA WP  + + A   R++++  L A+PEL L D+ 
Sbjct: 207 RPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRC 266

Query: 94  KLFTIL--DMQEINHYLNLPPHWKYDYCMLLL 124
           +L  IL  ++ ++  +L +P H KY YC L+L
Sbjct: 267 RLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

[Close]
BLAST of Lcy03g001630 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-08
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 0 

Query: 22  TLVALAGSLLDGRRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEEL 81
           T+   +G     R  Y+S M++++R+NM  Q   LEK+A+WP  K+E+  ARRK V ++L
Sbjct: 111 TIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQL 170

Query: 82  LAMPELELKDKFKLFTIL--DMQEINHYLNLPPHWKYDYCMLLLGR 126
             +P LE  D  +L  IL  ++++   +L +P  +K  +CM LLG+
Sbjct: 171 KQIPNLEANDYVRLVGILMTNVKKSISFLEVPIEFKKMFCMQLLGK 216

[Close]
BLAST of Lcy03g001630 vs. NCBI nr
Match: KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-05
Identity = 31/92 (33.70%), Postives = 59/92 (64.13%), Query Frame = 0 

Query: 34  RRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKF 93
           R  +S++  ++IR+ +E +N +L  IA WP  + + A   R++V+ +L A+PEL L D+ 
Sbjct: 229 RAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRC 288

Query: 94  KLFTIL--DMQEINHYLNLPPHWKYDYCMLLL 124
           +L  IL  ++ ++  +L++P + KY YC ++L
Sbjct: 289 RLMRILMRNVDDMKAFLDVPNNMKYPYCSIIL 320

[Close]
BLAST of Lcy03g001630 vs. NCBI nr
Match: KAA0051960.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-05
Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = 0 

Query: 34  RRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKF 93
           R  ++++  +++R+ +E  N +L +IA WP  + + A   R++++  L A+PEL L D+ 
Sbjct: 207 RPGHATDSGDIVRTPIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRC 266

Query: 94  KLFTIL--DMQEINHYLNLPPHWKYDYCMLLL 124
           +L  IL  ++ ++  +L +P H KY YC L+L
Sbjct: 267 RLMRILMRNVDDMKSFLEVPDHMKYPYCSLIL 298

[Close]
BLAST of Lcy03g001630 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-05
Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = 0 

Query: 34  RRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKF 93
           R  ++++  +++R+ +E  N +L +IA WP  + + A   R++++  L A+PEL L D+ 
Sbjct: 207 RPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRC 266

Query: 94  KLFTIL--DMQEINHYLNLPPHWKYDYCMLLL 124
           +L  IL  ++ ++  +L +P H KY YC L+L
Sbjct: 267 RLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

[Close]
BLAST of Lcy03g001630 vs. NCBI nr
Match: KAA0051058.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-05
Identity = 30/92 (32.61%), Postives = 57/92 (61.96%), Query Frame = 0 

Query: 34  RRSYSSNMIEMIRSNMEKQNVELEKIASWPKTKDERAKARRKKVIEELLAMPELELKDKF 93
           R  ++++  +++R+ +E  N +L +IA WP  + + A   R++++  L A+PEL L D+ 
Sbjct: 207 RPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRC 266

Query: 94  KLFTIL--DMQEINHYLNLPPHWKYDYCMLLL 124
           +L  IL  ++ ++  +L +P H KY YC L+L
Sbjct: 267 RLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

The following BLAST results are available for this feature:
BLAST of Lcy03g001630 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g001630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DW733.8e-0836.79uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7TDD62.3e-0533.70Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9V63.0e-0532.61Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UME43.9e-0532.61Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DPR53.9e-0532.61Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Lcy03g001630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158565.17.8e-0836.79uncharacterized protein LOC111025018 [Momordica charantia][more]
KAA0041444.14.7e-0533.70retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... [more]
KAA0051960.16.2e-0532.61retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035621.18.1e-0532.61retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... [more]
KAA0051058.18.1e-0532.61retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lcy03g001630 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g001630.1Lcy03g001630.1mRNA