Lcy03g001410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g001410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CRAL-TRIO domain-containing protein
Location	Chr03: 4610027 .. 4610221 (-)
RNA-Seq Expression	Lcy03g001410
Synteny	Lcy03g001410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTTGAGAAAGTGGCGAAGATGTTCGTGCAATGGCAGAAATTGAGGGATGCGATGGTTTCTAATGGACGAATCGATGAATCTGAGATTGAAGATGAACTGGGAGCGAGGAAGATTTATTTGCAGGGTTTGTCGAAGAATATATGGGCACTCTGTGATGATCGTCAAAGGGAACAAGCATTTTCTTGCTAA

mRNA sequence

ATGGACGTTGAGAAAGTGGCGAAGATGTTCGTGCAATGGCAGAAATTGAGGGATGCGATGGTTTCTAATGGACGAATCGATGAATCTGAGATTGAAGATGAACTGGGAGCGAGGAAGATTTATTTGCAGGGTTTGTCGAAGAATATATGGGCACTCTGTGATGATCGTCAAAGGGAACAAGCATTTTCTTGCTAA

Coding sequence (CDS)

ATGGACGTTGAGAAAGTGGCGAAGATGTTCGTGCAATGGCAGAAATTGAGGGATGCGATGGTTTCTAATGGACGAATCGATGAATCTGAGATTGAAGATGAACTGGGAGCGAGGAAGATTTATTTGCAGGGTTTGTCGAAGAATATATGGGCACTCTGTGATGATCGTCAAAGGGAACAAGCATTTTCTTGCTAA

Protein sequence

MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKNIWALCDDRQREQAFSC

Homology

[Close]

BLAST of Lcy03g001410 vs. ExPASy TrEMBL
Match: A0A6J1FXA2 (CRAL-TRIO domain-containing protein YKL091C isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447885 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.7e-14
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 38 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSRN 85

[Close]

BLAST of Lcy03g001410 vs. ExPASy TrEMBL
Match: A0A6J1FQK5 (SEC14 cytosolic factor isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447885 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.7e-14
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 10 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSRN 57

[Close]

BLAST of Lcy03g001410 vs. ExPASy TrEMBL
Match: A0A6J1JN82 (CRAL-TRIO domain-containing protein YKL091C isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486211 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.8e-14
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 38 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSQN 85

[Close]

BLAST of Lcy03g001410 vs. ExPASy TrEMBL
Match: A0A6J1JN93 (CRAL-TRIO domain-containing protein YKL091C isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486211 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.8e-14
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 38 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSQN 85

[Close]

BLAST of Lcy03g001410 vs. ExPASy TrEMBL
Match: A0A6J1JEQ2 (SEC14 cytosolic factor isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111486211 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.8e-14
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 10 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSQN 57

[Close]

BLAST of Lcy03g001410 vs. NCBI nr
Match: XP_022943026.1 (SEC14 cytosolic factor isoform X2 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 10 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSRN 57

[Close]

BLAST of Lcy03g001410 vs. NCBI nr
Match: XP_022943023.1 (CRAL-TRIO domain-containing protein YKL091C isoform X1 [Cucurbita moschata] >XP_022943024.1 CRAL-TRIO domain-containing protein YKL091C isoform X1 [Cucurbita moschata] >XP_022943025.1 CRAL-TRIO domain-containing protein YKL091C isoform X1 [Cucurbita moschata] >KAG6600852.1 hypothetical protein SDJN03_06085, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031486.1 hypothetical protein SDJN02_05526 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 38 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSRN 85

[Close]

BLAST of Lcy03g001410 vs. NCBI nr
Match: XP_023513874.1 (SEC14 cytosolic factor isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 10 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSQN 57

[Close]

BLAST of Lcy03g001410 vs. NCBI nr
Match: XP_023513848.1 (SEC14 cytosolic factor isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513858.1 SEC14 cytosolic factor isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513865.1 SEC14 cytosolic factor isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 38 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSQN 85

[Close]

BLAST of Lcy03g001410 vs. NCBI nr
Match: XP_022989044.1 (CRAL-TRIO domain-containing protein YKL091C isoform X2 [Cucurbita maxima])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMVSNGRIDESEIEDELGARKIYLQGLSKN 49
          MDVEK AKMFVQWQK RD MV NGRIDESEIEDEL ARKIYLQGLS+N
Sbjct: 38 MDVEKAAKMFVQWQKWRDTMVPNGRIDESEIEDELEARKIYLQGLSQN 85

[Close]

BLAST of Lcy03g001410 vs. TAIR 10
Match: AT1G14820.3 (Sec14p-like phosphatidylinositol transfer family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.5e-07
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMV-SNGRIDESEIEDELGARKIYLQGLSKN 49
          MD  K AKMFV WQK R +MV   G I ESE++DEL  RK+ LQG +K+
Sbjct: 40 MDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQGPTKS 88

[Close]

BLAST of Lcy03g001410 vs. TAIR 10
Match: AT1G14820.2 (Sec14p-like phosphatidylinositol transfer family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.5e-07
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMV-SNGRIDESEIEDELGARKIYLQGLSKN 49
          MD  K AKMFV WQK R +MV   G I ESE++DEL  RK+ LQG +K+
Sbjct: 27 MDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQGPTKS 75

[Close]

BLAST of Lcy03g001410 vs. TAIR 10
Match: AT1G14820.1 (Sec14p-like phosphatidylinositol transfer family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.5e-07
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1  MDVEKVAKMFVQWQKLRDAMV-SNGRIDESEIEDELGARKIYLQGLSKN 49
          MD  K AKMFV WQK R +MV   G I ESE++DEL  RK+ LQG +K+
Sbjct: 27 MDPVKAAKMFVDWQKWRASMVPPTGFIPESEVQDELEFRKVCLQGPTKS 75

The following BLAST results are available for this feature:

BLAST of Lcy03g001410 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g001410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXA2	6.7e-14	87.50	CRAL-TRIO domain-containing protein YKL091C isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1FQK5	6.7e-14	87.50	SEC14 cytosolic factor isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447885 ...	[more]
A0A6J1JN82	8.8e-14	87.50	CRAL-TRIO domain-containing protein YKL091C isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1JN93	8.8e-14	87.50	CRAL-TRIO domain-containing protein YKL091C isoform X2 OS=Cucurbita maxima OX=36...	[more]
A0A6J1JEQ2	8.8e-14	87.50	SEC14 cytosolic factor isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111486211 PE...	[more]

BLAST of Lcy03g001410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943026.1	1.4e-13	87.50	SEC14 cytosolic factor isoform X2 [Cucurbita moschata]	[more]
XP_022943023.1	1.4e-13	87.50	CRAL-TRIO domain-containing protein YKL091C isoform X1 [Cucurbita moschata] >XP_...	[more]
XP_023513874.1	1.8e-13	87.50	SEC14 cytosolic factor isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023513848.1	1.8e-13	87.50	SEC14 cytosolic factor isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513858.1 S...	[more]
XP_022989044.1	1.8e-13	87.50	CRAL-TRIO domain-containing protein YKL091C isoform X2 [Cucurbita maxima]	[more]

BLAST of Lcy03g001410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14820.3	3.5e-07	57.14	Sec14p-like phosphatidylinositol transfer family protein	[more]
AT1G14820.2	3.5e-07	57.14	Sec14p-like phosphatidylinositol transfer family protein	[more]
AT1G14820.1	3.5e-07	57.14	Sec14p-like phosphatidylinositol transfer family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46277:SF7	SEC14 CYTOSOLIC FACTOR-LIKE	coord: 1..52
None	No IPR available	PANTHER	PTHR46277	OS03G0850700 PROTEIN	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g001410.1	Lcy03g001410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane