Lcy03g001210 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g001210
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Single-stranded DNA-binding protein
Location	Chr03: 3919022 .. 3922883 (+)
RNA-Seq Expression	Lcy03g001210
Synteny	Lcy03g001210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAACCCTACTTCTACCCTGATCGAATCCTCATTTCCAATTCTGCTCTCTCTCGATCAACATGAATTCAGTCGTATTGAGATTCGTCAAGCATTTCAGAATTTCTTCTTCAAATTTTCCCACATCTTCATTTGGTACTCTCTCTCTCTCTCTCTGTCGCGTTTTGTAGATTGAGGCGTGTGTTCTTTCTTTTATATGAATCGCTTTCGGTTGCGAGCTGAAGAAAATTTCCAAGACGTTTCTATGGTTAACTGTAGAAAATGTCGTTAGATATATGAACGCAACTTTCCCGCTTTTTGCAAATTGATCTTCGGAGTGGATTTTTATCAAATACGTGGTGGGCGAACTTGTTTTTGTTATGAATTTGAGGTTGGACTAAGAACTTGACTGACCTCGTGTAGTTGGTTTATCATAAGTGTAATGTTTGTGCTGGAGGGATGACTTGGATTATTATTGAATGTTTGATTGTAGTGGCAAGTAGGAAAACAAGCTCGAAGTTGTGGTTCTCAACCGGTGCTTCTGGAAGTGACATTGAAGTTGAGAAGAATAATGGAGAAGAAGAAGAATATGATGATATTTTTAATGATAAAATTGAATTACAGCCCCAAGGTGTGGATCCCAGGCGAGGTTGGGGCTTTCGAGGCGTACATAAGGTATTCGATCTGCCCATAGATGTGTTCCATTTTTAAAAGTTGGGATTTGAAACCTGGATCTGGGAATTTGACCCAATAAGCGGAGTTTAATCCTTGCATTCTGTTTTTGTGATGATACTTAGTGTTTTTGGTGATTGTTTTACTTTTGTCAAATTTACAAACTATCAAAATTGAAAGAACAGCTTCCATTTTTTTGCTTCTTAGAAACGTGCCTTGCCCTTCTTTCGTGAGCCACACCCCAAAAGCCAAGCGATTGGGGAGGGAGAACCAACCACTTATATACCCCATTAGGAGTCCATATCTTTCCAATGTGGGACAAAGGCATCTCATACTACCTTGGTCCCTAACAATTGCCCCTCCTCAGAAAGCCGACGTCTCGGCGGCTGTGCACGGCAGACGCTGCACTCGGTTGGTTCCAGTTAGCCCCTCCACCGCCACTCCTCTCCGGAGCTGTTGATTACCGACTCTGATACCAATTGTTAGGTAACTAAGTAGTTGGAGAGCCACACCCCAAAAGCCAGGCGATTGGGGAGGGAGAACAGATACCTAACAATTGGTATCAGAGCCGGTGGTCGATGGCTCCGGAGGGGCTGATCGAAACCAACCAAGTGGAGCGTCGTTGTGCACAGCTGCCGAGACGTCGGCTTTCTGGGGAGGGAAAATTGTTAGGGACCAAGGCAGTATGGGATGCCTTTTTTTTTTATAATGAACCAACCTTTCATTGAGAAAAAATGAAAGAATACAAGGACATACAAAAAAAACCAAGCCCCAAAAGGAAATCCCCTTAGATAAAGGGACGCCAATCTAACAAAATAAGACCTAAAGAATAATTACAGAATAAACACGTCACCGACATTGGAAAGATATGGGCTCCTAATGGGGTATATAAGTGGTTGGTTCTCCCTCCCTAATCGCCTAGCTTTTGGGGGGTGGCTCTCCACCTACTTAGTTATCTAACATGAGTTTTATCATAAATCTAATGAGAAAGAGAATCCACTTGTGTACTTTTATGTATTTTAGAAATAATGAGGGGATTTTAGGAGTAGGTGAAAGATTTTTATGAGGAAGAAGGAGAGATGACGTGCTAGAGGTTTAACTTTGAAGCATGATGTAAGTGATTAGGAATACGTATGTGTGATCTATTGTAAGATTCCAGATGAGCAAGTAGGATCAGTAGCTTGTTAGACAGTTTGGAAAGTGAATTATAAGAATTACTTGTAAGTGAGACTTGAGAGGAGTGATAGGCAACAATTAGAGTTAGGGAGAGACCCAGACCTCTGGAACTTTGGTTATTTCTTCTCTTTCGGAATTAATAAAATTTGTCCCTTGGTGGAGGGTTATGCCAAAATCTTAGGTAATAGTCCCACCCCAACCAAACAAAAGGAATTATCTTTGATTCAAGTGACAAGATTATGTGAAAACGAGTGAAATCATGACTCTTTCAATTTATTATTCCTCAGCAGGGAAAGAAGGGGTCAGCAATCCCCAGTAAGATGTCCTGTTTTGTTTATAAATGTAATCAAATGTTTACAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACGGTAACAATCTTTACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCTCTTGGTGCTTATGCAGTTCAACAACTTGTTAAAAAGTATGATTTGATCTTCTCATAAACTAGTTTGTCTGTACAATTTCACTGATTCTTGGTGGACTGTCAGCGCGTCGGTTTATGTTGAGGGCGACATTGAAACCAGAGTCTACAATGACAGCATCAATGGTGCAGTAAAAAATGTGCCAGAAATATGTGTTCGACGTGATGGTATTGCAACACACACTATATCTTTTGATTTCCTTTTCTTTTCTTCTTGCTTACTATATCTTCTGATTTCCCTTCAACGTTTCTCTGAAATCAGTCAACCATGTCTAAGTAATATGAAGAATCATCTGATAACTTTTGTGCTTCTTACATCTATTTGACTATTTCTTTATGGTCATTTTATGCATATGGAAAAAGTTGTCCTTGGATGTTAATTATCTCAAGGTTAAATTACATTTTTGGTTTCTAGTCATTTGTACTTGATTTCAATTTGGTCTTTTTTTTTTTTGAAAAGAAATCTGGTCTCTATAATAATTTTAAAAGTTGCAATTTGATCTCTATAGTTTTGTTAGATTTTTCAAGATGTTTCTGGTGTCACCAGAAGTTGATAATTGTATTGCATGACATTTTTCTTTGAACACATGTACATTTTCTTTGGATGTGGTAGGAAGGTGATGAGTTAGTATCTAAAGAACACTTAAGAAACTTGTCAATATTTGGTAAATCTTGGGATATTTTGATATTTATCCAAACTACAGGGATCAATTGAAACCAAACACAAATCATAGACTAAAATGCTAATTTAACTTAGTCTTGATATAATATTAAATAGAAAAGTGTAGACTAAAATAGTAAATTAACCTAACCATTATTCAGTTTGAACAGAAAAGTATTCCCAGTCATGTTAGTTCAAGTTTGATCTGTGAAAGACTTTATTTGGAACTCCTTTTGACTGCCTTGCTTCATTTTTGCAGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCAATATTTCTTTGGACGATTTGAGTGAGTTTGCCTGATGAAATTTTGTTGATATGATTACTAAATATGGCAACTGTGCATTGCATGGTAACTTTTTCACTCTTTCTGGCAATCTGATGTGTTCTTTTTTTGCTGGTTTTGTAACTGACAGAAGAAGGGTTGTTTCAGAACGAGACAGAGACAGACCAGCACATTATGATAAACCCAATCAATTGAAGTTTGTGTAGCTTTGTAACTTGATCACGGGAGAGATACTGTTGCTTCCTATTCAAAGATTGAGCTAGAGTTAAGTACTGAAAACCAGAGGTTTCGACCCATGCCCAACTAATCTCTTGTAATTGTTTCAGGTTGTATTATTTTCTTTTTCAAGGCTCTAAGCCAGTTTTGTGTTGGATTGGCACTGAAAATTATAGCTTAATTAAAGCTGCCACTGCTGATGGCTTTAATCTCCTTTAAATGTATTTCTCCTGAAAATTGAAAGCGTCAATTGAAATCCACATATTATAGAGA

mRNA sequence

CTAAAACCCTACTTCTACCCTGATCGAATCCTCATTTCCAATTCTGCTCTCTCTCGATCAACATGAATTCAGTCGTATTGAGATTCGTCAAGCATTTCAGAATTTCTTCTTCAAATTTTCCCACATCTTCATTTGTGGCAAGTAGGAAAACAAGCTCGAAGTTGTGGTTCTCAACCGGTGCTTCTGGAAGTGACATTGAAGTTGAGAAGAATAATGGAGAAGAAGAAGAATATGATGATATTTTTAATGATAAAATTGAATTACAGCCCCAAGGTGTGGATCCCAGGCGAGGTTGGGGCTTTCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACGGTAACAATCTTTACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCTCTTGGTGCTTATGCAGTTCAACAACTTGTTAAAAACGCGTCGGTTTATGTTGAGGGCGACATTGAAACCAGAGTCTACAATGACAGCATCAATGGTGCAGTAAAAAATGTGCCAGAAATATGTGTTCGACGTGATGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCAATATTTCTTTGGACGATTTGAAAGAAGGGTTGTTTCAGAACGAGACAGAGACAGACCAGCACATTATGATAAACCCAATCAATTGAAGTTTGTGTAGCTTTGTAACTTGATCACGGGAGAGATACTGTTGCTTCCTATTCAAAGATTGAGCTAGAGTTAAGTACTGAAAACCAGAGGTTTCGACCCATGCCCAACTAATCTCTTGTAATTGTTTCAGGTTGTATTATTTTCTTTTTCAAGGCTCTAAGCCAGTTTTGTGTTGGATTGGCACTGAAAATTATAGCTTAATTAAAGCTGCCACTGCTGATGGCTTTAATCTCCTTTAAATGTATTTCTCCTGAAAATTGAAAGCGTCAATTGAAATCCACATATTATAGAGA

Coding sequence (CDS)

ATGAATTCAGTCGTATTGAGATTCGTCAAGCATTTCAGAATTTCTTCTTCAAATTTTCCCACATCTTCATTTGTGGCAAGTAGGAAAACAAGCTCGAAGTTGTGGTTCTCAACCGGTGCTTCTGGAAGTGACATTGAAGTTGAGAAGAATAATGGAGAAGAAGAAGAATATGATGATATTTTTAATGATAAAATTGAATTACAGCCCCAAGGTGTGGATCCCAGGCGAGGTTGGGGCTTTCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACGGTAACAATCTTTACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCTCTTGGTGCTTATGCAGTTCAACAACTTGTTAAAAACGCGTCGGTTTATGTTGAGGGCGACATTGAAACCAGAGTCTACAATGACAGCATCAATGGTGCAGTAAAAAATGTGCCAGAAATATGTGTTCGACGTGATGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCAATATTTCTTTGGACGATTTGAAAGAAGGGTTGTTTCAGAACGAGACAGAGACAGACCAGCACATTATGATAAACCCAATCAATTGA

Protein sequence

MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDIFNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNVPEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNETETDQHIMINPIN

Homology

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BLAST of Lcy03g001210 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.4e-73
Identity = 140/212 (66.04%), Postives = 165/212 (77.83%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MNS+ +R  K  R SS     S    S +  SK WFSTG          + G EE++++ 
Sbjct: 1   MNSLAIRVSKVLRSSS----ISPLAISAERGSKSWFSTGPI--------DEGVEEDFEEN 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
             ++ ELQP GVDPR+GWGFRGVH+AIICG+VGQAP+QKILRNGRTVTIFTVGTGGMFDQ
Sbjct: 61  VTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           R+V A + PKPAQWHRIAVHNE LG+YAVQ+L KN+SVYVEGDIETRVYNDSI+  VK++
Sbjct: 121 RLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSI 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGL 213
           PEICVRRDGKIR++K GES S IS D+LKEGL
Sbjct: 181 PEICVRRDGKIRMIKYGESISKISFDELKEGL 200

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BLAST of Lcy03g001210 vs. ExPASy Swiss-Prot
Match: P18022 (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 GN=ssb PE=3 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-10
Identity = 42/143 (29.37%), Postives = 71/143 (49.65%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 140
           RG++K I+ GR+G  P  + + NG  V    V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESW--RDKQTGEMREQTEWHRVVLF 63

Query: 141 NEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNVPEICVRRDGKIRLL------ 200
            + L   A + L K A VY+EG + TR ++D  NG  + + EI V+  G +++L      
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLGSAPQQ 123

Query: 201 ------KPGESASNISLDDLKEG 212
                 KP ++    S D  K+G
Sbjct: 124 NAQAQPKPQQNGQPQSADATKKG 141

[Close]

BLAST of Lcy03g001210 vs. ExPASy Swiss-Prot
Match: P28045 (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 GN=ssb PE=3 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-10
Identity = 42/143 (29.37%), Postives = 71/143 (49.65%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 140
           RG++K I+ GR+G  P  + + NG  V    V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESW--RDKQTGEMREQTEWHRVVLF 63

Query: 141 NEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNVPEICVRRDGKIRLL------ 200
            + L   A + L K A VY+EG + TR ++D  NG  + + EI V+  G +++L      
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLGSAPQQ 123

Query: 201 ------KPGESASNISLDDLKEG 212
                 KP ++    S D  K+G
Sbjct: 124 NAQAQPKPQQNGQPQSADATKKG 141

[Close]

BLAST of Lcy03g001210 vs. ExPASy Swiss-Prot
Match: Q9CYR0 (Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus OX=10090 GN=Ssbp1 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-09
Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMF---DQRIVEAKDLPKPAQWHRI 140
           R +++  + GRVGQ PV + +     VTIF++ T  M+   D  + +  D+ +   WHRI
Sbjct: 28  RSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSEVYQMGDVSQKTTWHRI 87

Query: 141 AVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSIN 175
           +V    L   A Q + K A ++VEG ++   Y D  N
Sbjct: 88  SVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNN 124

[Close]

BLAST of Lcy03g001210 vs. ExPASy Swiss-Prot
Match: Q5RDQ0 (Single-stranded DNA-binding protein, mitochondrial OS=Pongo abelii OX=9601 GN=SSBP1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 81  RGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMF---DQRIVEAKDLPKPAQWHRI 140
           R +++  + GRVGQ PV + +     VTIF++ T  M+   D  + +  D+ +   WHRI
Sbjct: 28  RSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDISQKTTWHRI 87

Query: 141 AVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSIN 175
           +V    L   A Q + K + +Y+EG I+   Y D  N
Sbjct: 88  SVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNN 124

[Close]

BLAST of Lcy03g001210 vs. ExPASy TrEMBL
Match: A0A6J1HZ42 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467920 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.2e-107
Identity = 198/217 (91.24%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MN+V +RF+KHFRIS      SSFVASR+TSSKLW STGASGS I+VEKNNGEEEEYDD 
Sbjct: 1   MNAVAMRFLKHFRIS------SSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSING VKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNET 218
           PEICVRRDGKIRLLK GESASNISLDDLKEGLFQNET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLFQNET 211

[Close]

BLAST of Lcy03g001210 vs. ExPASy TrEMBL
Match: A0A6J1C1K4 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007549 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.3e-107
Identity = 195/213 (91.55%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MNSV LRF KHFRI SS FP SSFVASR+TSSKLWFSTG S SD +VEKNN EEEEYDD+
Sbjct: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVK+ASVYVEGDIETRVYNDSING VKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLKP ESASNISLDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 213

[Close]

BLAST of Lcy03g001210 vs. ExPASy TrEMBL
Match: A0A6J1HCE9 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462062 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.2e-106
Identity = 195/217 (89.86%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MN+V +RFVKHFRIS      SSFVASR+TSSKLW ST ASGS I+VEKNNG+EEEYDD 
Sbjct: 1   MNAVAMRFVKHFRIS------SSFVASRQTSSKLWLSTSASGSGIDVEKNNGDEEEYDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSING VKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNET 218
           PEICVRRDGKIRLLK GESASNI LDDLKEGLF+NET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLFENET 211

[Close]

BLAST of Lcy03g001210 vs. ExPASy TrEMBL
Match: A0A0A0LVY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568540 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.6e-95
Identity = 175/217 (80.65%), Postives = 192/217 (88.48%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MNSV +RF+  FR  SSNFPTSSFVAS +TSSK W STGAS  D +VEKN+GEE++YD  
Sbjct: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
            N   ELQPQGVDP RGWG+RGVHKAIICGRVGQAPVQKILRNGRT+TIFTVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RI + +DLPKPAQWHRIAVHNE LGAYAVQ+L +NASVYVEGDIETRVYNDSING VKN+
Sbjct: 121 RIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNET 218
           PEICVRRDG +RLLKPGESASNISLDDLKEGLF N+T
Sbjct: 181 PEICVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 214

[Close]

BLAST of Lcy03g001210 vs. ExPASy TrEMBL
Match: A0A1S3BQI7 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492127 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.0e-92
Identity = 171/217 (78.80%), Postives = 190/217 (87.56%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MNSV +R +  FRI SSN PTSSFVAS +TSSK W STGAS SD+++EKN+G +++YD  
Sbjct: 1   MNSVTVRLLNRFRIPSSNSPTSSFVASTQTSSKFWLSTGASESDVDIEKNDGGDDDYDAF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
            N   ELQPQGVDP RGWG+RGVHKAIICGRVGQAPVQKILRNGRT+TIFTVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPSRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIV+ + LPKPAQWHRIAVHNE LGAYAVQ+L KNASVYVEGDIETRVYNDSING VKN+
Sbjct: 121 RIVDGRGLPKPAQWHRIAVHNELLGAYAVQKLCKNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNET 218
           PEICVRRDG + LLKPGESASN+SLDDLKE LF NET
Sbjct: 181 PEICVRRDGMLHLLKPGESASNLSLDDLKERLFSNET 214

[Close]

BLAST of Lcy03g001210 vs. NCBI nr
Match: XP_022968788.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_022968789.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 398.3 bits (1022), Expect = 4.5e-107
Identity = 198/217 (91.24%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MN+V +RF+KHFRIS      SSFVASR+TSSKLW STGASGS I+VEKNNGEEEEYDD 
Sbjct: 1   MNAVAMRFLKHFRIS------SSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSING VKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNET 218
           PEICVRRDGKIRLLK GESASNISLDDLKEGLFQNET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLFQNET 211

[Close]

BLAST of Lcy03g001210 vs. NCBI nr
Match: XP_038878660.1 (single-stranded DNA-binding protein, mitochondrial [Benincasa hispida])

HSP 1 Score: 396.7 bits (1018), Expect = 1.3e-106
Identity = 191/217 (88.02%), Postives = 206/217 (94.93%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MN+V +RF+  FRISSSNFPT+SFVASR+TS KLW ST AS SD++VEKNNGEE+EYD  
Sbjct: 1   MNAVAMRFLNRFRISSSNFPTTSFVASRQTSWKLWLSTDASESDVDVEKNNGEEDEYDQF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
           FN+K+ELQPQGVDPRRGWG+RGVHKAIICGRVGQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  FNEKVELQPQGVDPRRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIVEAKDLP+PAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSI G VKN+
Sbjct: 121 RIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSIGGEVKNI 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNET 218
           PEICVRRDGK+RLLKPGESASNISLDDLKEGLFQNET
Sbjct: 181 PEICVRRDGKLRLLKPGESASNISLDDLKEGLFQNET 217

[Close]

BLAST of Lcy03g001210 vs. NCBI nr
Match: XP_022135640.1 (single-stranded DNA-binding protein, mitochondrial [Momordica charantia])

HSP 1 Score: 396.4 bits (1017), Expect = 1.7e-106
Identity = 195/213 (91.55%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MNSV LRF KHFRI SS FP SSFVASR+TSSKLWFSTG S SD +VEKNN EEEEYDD+
Sbjct: 1   MNSVALRFAKHFRIPSSTFPASSFVASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDM 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
           F+DK+ELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  FDDKVELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVK+ASVYVEGDIETRVYNDSING VKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLF 214
           PEICVRRDGKIRLLKP ESASNISLDDLKEGLF
Sbjct: 181 PEICVRRDGKIRLLKPAESASNISLDDLKEGLF 213

[Close]

BLAST of Lcy03g001210 vs. NCBI nr
Match: KAG7024011.1 (Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.9 bits (1008), Expect = 1.9e-105
Identity = 195/217 (89.86%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MN+V +RF+KHFRIS      SSFVASR+TSSKLW ST ASGS I+VEKNNGEEEEYDD+
Sbjct: 1   MNAVAMRFLKHFRIS------SSFVASRQTSSKLWLSTSASGSGIDVEKNNGEEEEYDDL 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSING VKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNET 218
           PEICVRRDGKIRLLK GESASNI LDDLKEGLF NET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLFDNET 211

[Close]

BLAST of Lcy03g001210 vs. NCBI nr
Match: XP_022961505.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita moschata])

HSP 1 Score: 392.9 bits (1008), Expect = 1.9e-105
Identity = 195/217 (89.86%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MN+V +RFVKHFRIS      SSFVASR+TSSKLW ST ASGS I+VEKNNG+EEEYDD 
Sbjct: 1   MNAVAMRFVKHFRIS------SSFVASRQTSSKLWLSTSASGSGIDVEKNNGDEEEYDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
           FNDKIELQPQGVDPRRGWGFRGVHKAIICGR+GQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSING VKNV
Sbjct: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGLFQNET 218
           PEICVRRDGKIRLLK GESASNI LDDLKEGLF+NET
Sbjct: 181 PEICVRRDGKIRLLKAGESASNICLDDLKEGLFENET 211

[Close]

BLAST of Lcy03g001210 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 276.2 bits (705), Expect = 2.4e-74
Identity = 140/212 (66.04%), Postives = 165/212 (77.83%), Query Frame = 0


Query: 1   MNSVVLRFVKHFRISSSNFPTSSFVASRKTSSKLWFSTGASGSDIEVEKNNGEEEEYDDI 60
           MNS+ +R  K  R SS     S    S +  SK WFSTG          + G EE++++ 
Sbjct: 1   MNSLAIRVSKVLRSSS----ISPLAISAERGSKSWFSTGPI--------DEGVEEDFEEN 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120
             ++ ELQP GVDPR+GWGFRGVH+AIICG+VGQAP+QKILRNGRTVTIFTVGTGGMFDQ
Sbjct: 61  VTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNV 180
           R+V A + PKPAQWHRIAVHNE LG+YAVQ+L KN+SVYVEGDIETRVYNDSI+  VK++
Sbjct: 121 RLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSI 180

Query: 181 PEICVRRDGKIRLLKPGESASNISLDDLKEGL 213
           PEICVRRDGKIR++K GES S IS D+LKEGL
Sbjct: 181 PEICVRRDGKIRMIKYGESISKISFDELKEGL 200

[Close]

BLAST of Lcy03g001210 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 102.4 bits (254), Expect = 4.8e-22
Identity = 45/119 (37.82%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 82  GVHKAIICGRVGQAPVQKILRNGRTVTIFTVGTGGMFDQRIVEAKDLPK------PAQWH 141
           G+ KAI+ G+VGQ P+QK L++GRTVT+F+VGTGG+ + R     + P+        QWH
Sbjct: 79  GIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWH 138

Query: 142 RIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGAVKNVPEICVRRDGKIRLL 195
           R++V+ E L    ++ +     +Y+EG++ET+++ D + G V+ + E+ +RR+G++  L
Sbjct: 139 RVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFL 197

The following BLAST results are available for this feature:

BLAST of Lcy03g001210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	3.4e-73	66.04	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
P18022	2.4e-10	29.37	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 G...	[more]
P28045	2.4e-10	29.37	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli OX=562 G...	[more]
Q9CYR0	7.7e-09	32.99	Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus OX=10090 GN=S...	[more]
Q5RDQ0	1.3e-08	32.99	Single-stranded DNA-binding protein, mitochondrial OS=Pongo abelii OX=9601 GN=SS...	[more]

BLAST of Lcy03g001210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZ42	2.2e-107	91.24	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1C1K4	8.3e-107	91.55	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]
A0A6J1HCE9	9.2e-106	89.86	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita moschata OX=3662...	[more]
A0A0A0LVY2	5.6e-95	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568540 PE=4 SV=1	[more]
A0A1S3BQI7	2.0e-92	78.80	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Lcy03g001210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968788.1	4.5e-107	91.24	single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_022968...	[more]
XP_038878660.1	1.3e-106	88.02	single-stranded DNA-binding protein, mitochondrial [Benincasa hispida]	[more]
XP_022135640.1	1.7e-106	91.55	single-stranded DNA-binding protein, mitochondrial [Momordica charantia]	[more]
KAG7024011.1	1.9e-105	89.86	Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp...	[more]
XP_022961505.1	1.9e-105	89.86	single-stranded DNA-binding protein, mitochondrial [Cucurbita moschata]	[more]

BLAST of Lcy03g001210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11060.1	2.4e-74	66.04	mitochondrially targeted single-stranded DNA binding protein	[more]
AT3G18580.1	4.8e-22	37.82	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011344	Single-stranded DNA-binding protein	TIGRFAM	TIGR00621	TIGR00621	coord: 81..193 e-value: 2.3E-15 score: 55.3
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 1..212
None	No IPR available	GENE3D	2.40.50.140		coord: 82..195 e-value: 2.3E-19 score: 71.4
None	No IPR available	PANTHER	PTHR10302:SF13	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	coord: 1..212
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 83..186 e-value: 2.6E-22 score: 78.9
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 83..192 score: 12.398211
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 87..187 e-value: 1.57497E-16 score: 70.3337
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 82..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g001210.1	Lcy03g001210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003697	single-stranded DNA binding