Lcy03g000980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor TCP14-like
Location	Chr03: 3134669 .. 3135058 (-)
RNA-Seq Expression	Lcy03g000980
Synteny	Lcy03g000980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACGAATACGAATAACCAAGTGATGGGGGGTGATCCCATATGGACTTTTCCGTCGGTTAATAACAGCGGTCTGTATAAAGGGACGATGTCGAGTGGGTTGCATTTCATGAACTTTCCGGCCCCAGTGGCGTTGGTTCTGTGTCAGCAATTCGGGTCAGGCATCGGCGGAGGTAATAACAGTTCCAGTGAGGGGCACTTGAACATACTTGCAGGGCTGAATCCGTATCGGTCGGTGTCGAGAACGGGCGTAATGGAACCGCAGGGAAGTGGGTCGTACTCACATCACGACGGTGGAGATGATCGACACGATACAAGAATGGGCGGAATAGTCTGCAGTGTTCGGAAGGAAGAAGACGATGGGCGGTGTTTTCAGAAGGAAGAATAG

mRNA sequence

ATGCTTACGAATACGAATAACCAAGTGATGGGGGGTGATCCCATATGGACTTTTCCGTCGGTTAATAACAGCGGTCTGTATAAAGGGACGATGTCGAGTGGGTTGCATTTCATGAACTTTCCGGCCCCAGTGGCGTTGGTTCTGTGTCAGCAATTCGGGTCAGGCATCGGCGGAGGTAATAACAGTTCCAGTGAGGGGCACTTGAACATACTTGCAGGGCTGAATCCGTATCGGTCGGTGTCGAGAACGGGCGTAATGGAACCGCAGGGAAGTGGGTCGTACTCACATCACGACGGTGGAGATGATCGACACGATACAAGAATGGGCGGAATAGTCTGCAGTGTTCGGAAGGAAGAAGACGATGGGCGGTGTTTTCAGAAGGAAGAATAG

Coding sequence (CDS)

ATGCTTACGAATACGAATAACCAAGTGATGGGGGGTGATCCCATATGGACTTTTCCGTCGGTTAATAACAGCGGTCTGTATAAAGGGACGATGTCGAGTGGGTTGCATTTCATGAACTTTCCGGCCCCAGTGGCGTTGGTTCTGTGTCAGCAATTCGGGTCAGGCATCGGCGGAGGTAATAACAGTTCCAGTGAGGGGCACTTGAACATACTTGCAGGGCTGAATCCGTATCGGTCGGTGTCGAGAACGGGCGTAATGGAACCGCAGGGAAGTGGGTCGTACTCACATCACGACGGTGGAGATGATCGACACGATACAAGAATGGGCGGAATAGTCTGCAGTGTTCGGAAGGAAGAAGACGATGGGCGGTGTTTTCAGAAGGAAGAATAG

Protein sequence

MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGNNSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHHDGGDDRHDTRMGGIVCSVRKEEDDGRCFQKEE

Homology

[Close]

BLAST of Lcy03g000980 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-09
Identity = 49/132 (37.12%), Postives = 63/132 (47.73%), Query Frame = 0


Query: 11  GGDPIWTFPSVNN----------SGLYKGTMSSGLHFMNFPAPVALVLCQQ--------- 70
           GG+P+WTFPS+N           SG+  G +SSGLHFMNF AP+A +  QQ         
Sbjct: 363 GGEPVWTFPSINTAAAALYRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHE 422

Query: 71  ---------FGSGIGGGNNSSS--------EGHLNILAGLNPY-RSVSRTGVMEPQGSGS 106
                     G   GGG++ ++        + H NIL+GLN Y R VS     + Q SGS
Sbjct: 423 INEDSNNNEGGRSDGGGDHHNTQRHHHHQQQHHHNILSGLNQYGRQVSG----DSQASGS 482

[Close]

BLAST of Lcy03g000980 vs. ExPASy Swiss-Prot
Match: Q9C9L2 (Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-05
Identity = 35/89 (39.33%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 23  NSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGNNSSSE-GHLNILAGLN-PYRSV 82
           NSG   G   SG+H MNF AP+AL   Q   SG GGG     E  H  +LA LN  YR V
Sbjct: 237 NSGGSGG--GSGVHLMNFAAPIALFSGQPLASGYGGGGGGGGEHSHYGVLAALNAAYRPV 296

Query: 83  SRTG-----VMEPQGSGSYSHHDGGDDRH 105
           + TG          G   ++H + G   H
Sbjct: 297 AETGNHNNNQQNRDGDHHHNHQEDGSTSH 323

[Close]

BLAST of Lcy03g000980 vs. ExPASy TrEMBL
Match: A0A6J1J9P7 (transcription factor TCP14-like OS=Cucurbita maxima OX=3661 GN=LOC111484815 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.5e-47
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGN 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGSG GGGN
Sbjct: 288 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGN 347

Query: 61  NSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH-DGGDDRHDT 107
           NSSSEGHLNILAGLNPYRSVS TG+ME QGSGS+SHH  GGDDRHD+
Sbjct: 348 NSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDS 394

[Close]

BLAST of Lcy03g000980 vs. ExPASy TrEMBL
Match: A0A6J1E3T0 (transcription factor TCP14-like OS=Cucurbita moschata OX=3662 GN=LOC111429686 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.5e-47
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGN 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGSG GGGN
Sbjct: 278 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGN 337

Query: 61  NSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH-DGGDDRHDT 107
           NSSSEGHLNILAGLNPYRSVS TG+ME QGSGS+SHH  GGDDRHD+
Sbjct: 338 NSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDS 384

[Close]

BLAST of Lcy03g000980 vs. ExPASy TrEMBL
Match: A0A0A0LRN4 (Transcription factor OS=Cucumis sativus OX=3659 GN=Csa_1G009680 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.9e-45
Identity = 98/118 (83.05%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGG- 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGSG GGG 
Sbjct: 189 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGTGGGS 248

Query: 61  --------NNSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH---DGGDDRHDT 107
                   NNSSSEGHLNILAGLNPYRSVS +GVMEPQGSGS SHH    GGDDRHDT
Sbjct: 249 NNNNNNNNNNSSSEGHLNILAGLNPYRSVSSSGVMEPQGSGSQSHHGGGGGGDDRHDT 306

[Close]

BLAST of Lcy03g000980 vs. ExPASy TrEMBL
Match: A0A5A7T0G2 (Transcription factor TCP14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002480 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 96/115 (83.48%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGG- 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGS  GGG 
Sbjct: 290 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSSTGGGS 349

Query: 61  -------NNSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH-DGGDDRHDT 107
                  N+SS+EGHLNILAGLNPYRSVS TGVMEPQGSGS SHH  GGDDRHDT
Sbjct: 350 NNNNNNNNSSSTEGHLNILAGLNPYRSVSNTGVMEPQGSGSQSHHGGGGDDRHDT 404

[Close]

BLAST of Lcy03g000980 vs. ExPASy TrEMBL
Match: A0A1S3BVN4 (transcription factor TCP14 OS=Cucumis melo OX=3656 GN=LOC103493985 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 96/115 (83.48%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGG- 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGS  GGG 
Sbjct: 290 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSSTGGGS 349

Query: 61  -------NNSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH-DGGDDRHDT 107
                  N+SS+EGHLNILAGLNPYRSVS TGVMEPQGSGS SHH  GGDDRHDT
Sbjct: 350 NNNNNNNNSSSTEGHLNILAGLNPYRSVSNTGVMEPQGSGSQSHHGGGGDDRHDT 404

[Close]

BLAST of Lcy03g000980 vs. NCBI nr
Match: XP_022921393.1 (transcription factor TCP14-like [Cucurbita moschata] >KAG6589503.1 Transcription factor TCP14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGN 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGSG GGGN
Sbjct: 278 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGN 337

Query: 61  NSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH-DGGDDRHDT 107
           NSSSEGHLNILAGLNPYRSVS TG+ME QGSGS+SHH  GGDDRHD+
Sbjct: 338 NSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDS 384

[Close]

BLAST of Lcy03g000980 vs. NCBI nr
Match: KAG7023189.1 (Transcription factor TCP14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGN 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGSG GGGN
Sbjct: 278 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGN 337

Query: 61  NSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH-DGGDDRHDT 107
           NSSSEGHLNILAGLNPYRSVS TG+ME QGSGS+SHH  GGDDRHD+
Sbjct: 338 NSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDS 384

[Close]

BLAST of Lcy03g000980 vs. NCBI nr
Match: XP_022987192.1 (transcription factor TCP14-like [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGN 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGSG GGGN
Sbjct: 288 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGN 347

Query: 61  NSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH-DGGDDRHDT 107
           NSSSEGHLNILAGLNPYRSVS TG+ME QGSGS+SHH  GGDDRHD+
Sbjct: 348 NSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDS 394

[Close]

BLAST of Lcy03g000980 vs. NCBI nr
Match: XP_023516074.1 (transcription factor TCP14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 4.3e-46
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGN 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGSG GGGN
Sbjct: 281 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGN 340

Query: 61  NSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH-DGGDDRHDT 107
           +SSSEGHLNILAGLNPYRSVS TG+ME QGSGS+SHH  GGDDRHD+
Sbjct: 341 HSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDS 387

[Close]

BLAST of Lcy03g000980 vs. NCBI nr
Match: XP_004138164.2 (transcription factor TCP14 [Cucumis sativus] >KAE8652415.1 hypothetical protein Csa_013205 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 8.1e-45
Identity = 98/118 (83.05%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MLTNTNNQVMGGDPIWTFPSVNNSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGG- 60
           MLTNTNNQVMGGDPIWTFPSVNNSGLY+GTMSSGLHFMNFPAPVALV  QQFGSG GGG 
Sbjct: 295 MLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGTGGGS 354

Query: 61  --------NNSSSEGHLNILAGLNPYRSVSRTGVMEPQGSGSYSHH---DGGDDRHDT 107
                   NNSSSEGHLNILAGLNPYRSVS +GVMEPQGSGS SHH    GGDDRHDT
Sbjct: 355 NNNNNNNNNNSSSEGHLNILAGLNPYRSVSSSGVMEPQGSGSQSHHGGGGGGDDRHDT 412

[Close]

BLAST of Lcy03g000980 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-10
Identity = 49/132 (37.12%), Postives = 63/132 (47.73%), Query Frame = 0


Query: 11  GGDPIWTFPSVNN----------SGLYKGTMSSGLHFMNFPAPVALVLCQQ--------- 70
           GG+P+WTFPS+N           SG+  G +SSGLHFMNF AP+A +  QQ         
Sbjct: 363 GGEPVWTFPSINTAAAALYRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHE 422

Query: 71  ---------FGSGIGGGNNSSS--------EGHLNILAGLNPY-RSVSRTGVMEPQGSGS 106
                     G   GGG++ ++        + H NIL+GLN Y R VS     + Q SGS
Sbjct: 423 INEDSNNNEGGRSDGGGDHHNTQRHHHHQQQHHHNILSGLNQYGRQVSG----DSQASGS 482

[Close]

BLAST of Lcy03g000980 vs. TAIR 10
Match: AT1G69690.1 (TCP family transcription factor )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 35/89 (39.33%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 23  NSGLYKGTMSSGLHFMNFPAPVALVLCQQFGSGIGGGNNSSSE-GHLNILAGLN-PYRSV 82
           NSG   G   SG+H MNF AP+AL   Q   SG GGG     E  H  +LA LN  YR V
Sbjct: 237 NSGGSGG--GSGVHLMNFAAPIALFSGQPLASGYGGGGGGGGEHSHYGVLAALNAAYRPV 296

Query: 83  SRTG-----VMEPQGSGSYSHHDGGDDRH 105
           + TG          G   ++H + G   H
Sbjct: 297 AETGNHNNNQQNRDGDHHHNHQEDGSTSH 323

The following BLAST results are available for this feature:

BLAST of Lcy03g000980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Z00	4.4e-09	37.12	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
Q9C9L2	1.7e-05	39.33	Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1	[more]

BLAST of Lcy03g000980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J9P7	5.5e-47	89.72	transcription factor TCP14-like OS=Cucurbita maxima OX=3661 GN=LOC111484815 PE=4...	[more]
A0A6J1E3T0	5.5e-47	89.72	transcription factor TCP14-like OS=Cucurbita moschata OX=3662 GN=LOC111429686 PE...	[more]
A0A0A0LRN4	3.9e-45	83.05	Transcription factor OS=Cucumis sativus OX=3659 GN=Csa_1G009680 PE=4 SV=1	[more]
A0A5A7T0G2	1.9e-44	83.48	Transcription factor TCP14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BVN4	1.9e-44	83.48	transcription factor TCP14 OS=Cucumis melo OX=3656 GN=LOC103493985 PE=4 SV=1	[more]

BLAST of Lcy03g000980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921393.1	1.1e-46	89.72	transcription factor TCP14-like [Cucurbita moschata] >KAG6589503.1 Transcription...	[more]
KAG7023189.1	1.1e-46	89.72	Transcription factor TCP14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022987192.1	1.1e-46	89.72	transcription factor TCP14-like [Cucurbita maxima]	[more]
XP_023516074.1	4.3e-46	88.79	transcription factor TCP14-like [Cucurbita pepo subsp. pepo]	[more]
XP_004138164.2	8.1e-45	83.05	transcription factor TCP14 [Cucumis sativus] >KAE8652415.1 hypothetical protein ...	[more]

BLAST of Lcy03g000980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47620.1	3.1e-10	37.12	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT1G69690.1	1.2e-06	39.33	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..107
None	No IPR available	PANTHER	PTHR31072:SF174	TRANSCRIPTION FACTOR TCP14-LIKE	coord: 1..106
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000980.1	Lcy03g000980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding