Lcy03g000830 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g000830
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUPF0496 protein 4-like
LocationChr03: 2603124 .. 2603599 (-)
RNA-Seq ExpressionLcy03g000830
SyntenyLcy03g000830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTCCAGCCCCTAGTTATAATGGTCCTTTTGTTTCATTCCTTCAACAAGCTCTGTTCCAAGCTCGACAATCACCACAAGTCTCGTCTTGGCTGAATCAACTCTTGTTGTCGAGTTTCGATTTGAAATTGTTGTCGTTTCAATGGCTTCTTCAGCTTGCAAAATTGGTTGTTGATTTGGAGTACCCCGTCGAGAAATGGGGAGCCGATTTGGTTGATGGGTATTTGGATTACAGTCTTAACTTGCTCAATCTTTTCAATTCCATCAGTTTTTCTCTATCCTAATTGGCGCCATCGCGACTTTCCCTTTCTTACGCTCTGAGCCTAATTCAGAGCTCCCTTTTAATGGTGGTTACCCATCTGAAATTTCGATTGTCCCGAAGACAAGTTTCAGAGGATTGGAAAACAAAGGAACTGTGAGAGATCAAAAGAAGGGTTGCTCCGGCAAGGAGTTGGCGATCGATAAAAAGTAG

mRNA sequence

ATGCAAATTCCAGCCCCTAGTTATAATGGTCCTTTTGTTTCATTCCTTCAACAAGCTCTGTTCCAAGCTCGACAATCACCACAAGTCTCGTCTTGGCTGAATCAACTCTTGTTGTCGAGTTTCGATTTGAAATTGTTGTCGTTTCAATGGCTTCTTCAGCTTGCAAAATTGGTTGTTGATTTGGAGTACCCCGTCGAGAAATGGGGAGCCGATTTGTTTTTCTCTATCCTAATTGGCGCCATCGCGACTTTCCCTTTCTTACGCTCTGAGCCTAATTCAGAGCTCCCTTTTAATGGTGGTTACCCATCTGAAATTTCGATTGTCCCGAAGACAAGTTTCAGAGGATTGGAAAACAAAGGAACTGTGAGAGATCAAAAGAAGGGTTGCTCCGGCAAGGAGTTGGCGATCGATAAAAAGTAG

Coding sequence (CDS)

ATGCAAATTCCAGCCCCTAGTTATAATGGTCCTTTTGTTTCATTCCTTCAACAAGCTCTGTTCCAAGCTCGACAATCACCACAAGTCTCGTCTTGGCTGAATCAACTCTTGTTGTCGAGTTTCGATTTGAAATTGTTGTCGTTTCAATGGCTTCTTCAGCTTGCAAAATTGGTTGTTGATTTGGAGTACCCCGTCGAGAAATGGGGAGCCGATTTGTTTTTCTCTATCCTAATTGGCGCCATCGCGACTTTCCCTTTCTTACGCTCTGAGCCTAATTCAGAGCTCCCTTTTAATGGTGGTTACCCATCTGAAATTTCGATTGTCCCGAAGACAAGTTTCAGAGGATTGGAAAACAAAGGAACTGTGAGAGATCAAAAGAAGGGTTGCTCCGGCAAGGAGTTGGCGATCGATAAAAAGTAG

Protein sequence

MQIPAPSYNGPFVSFLQQALFQARQSPQVSSWLNQLLLSSFDLKLLSFQWLLQLAKLVVDLEYPVEKWGADLFFSILIGAIATFPFLRSEPNSELPFNGGYPSEISIVPKTSFRGLENKGTVRDQKKGCSGKELAIDKK
Homology
[Close]
BLAST of Lcy03g000830 vs. ExPASy TrEMBL
Match: A0A6J1H7D5 (protein BPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461156 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 60/142 (42.25%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 28  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSI 87
           +VSS LNQLLLSS D   LSF WLLQL           AKLVVDL+ PV KWGADL    
Sbjct: 40  EVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDGY 99

Query: 88  LIGAIATFPFLRSEP-------NSELPFNGGYPSEI-------------SIVPKTSFRGL 139
           L  ++     L S         NS L     Y   +              IV K +F GL
Sbjct: 100 LNYSLNLLDLLNSVSFSLSQLGNSRLSL--AYALSLVRSSPLMAVARLKPIVMKRNFMGL 159

[Close]
BLAST of Lcy03g000830 vs. ExPASy TrEMBL
Match: A0A6J1KTC2 (protein BPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498050 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-10
Identity = 59/141 (41.84%), Postives = 70/141 (49.65%), Query Frame = 0 

Query: 28  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSI 87
           +VSS LNQLLL S D   LSF WLLQL           +KLVVDL+ PV KWGADL    
Sbjct: 40  EVSSCLNQLLLLSSDSTTLSFHWLLQLLQALPVLHRAFSKLVVDLDCPVAKWGADLVDGY 99

Query: 88  LIGAIATFPFLRSEP-------NSELPFNGGYPSEI-------------SIVPKTSFRGL 138
           L  ++     L S         NS L     Y   +              IV K +F GL
Sbjct: 100 LNYSLNLLDLLNSVSFSLSQLGNSRLSL--AYALSLVRSSPLMAVARLKPIVMKRNFVGL 159

[Close]
BLAST of Lcy03g000830 vs. ExPASy TrEMBL
Match: A0A6J1JX95 (UPF0496 protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111488317 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-08
Identity = 57/139 (41.01%), Postives = 65/139 (46.76%), Query Frame = 0 

Query: 29  VSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSIL 88
           VSS LNQ LLSS DL+ LSF WLLQL           AKLV +LE+PV KWGA L    L
Sbjct: 5   VSSCLNQFLLSSSDLEQLSFSWLLQLLQALPILHQAFAKLVFNLEHPVGKWGAHLVDGYL 64

Query: 89  IGAIATFPFLRS-------------EPNSELPFNGGYPSEI-----SIVPKTSFRGLENK 139
             ++     L S               +  L      PS        IVP   F  L   
Sbjct: 65  NYSLNLLDLLNSISFSLSQLGESRVSVSFALSLIQSSPSMAVSRLEQIVPMRGFERLVIG 124

[Close]
BLAST of Lcy03g000830 vs. ExPASy TrEMBL
Match: A0A5D3CEU0 (UPF0496 protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00250 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 54/140 (38.57%), Postives = 67/140 (47.86%), Query Frame = 0 

Query: 29  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSI 88
           VS+ LN LLLS+   K LSF +LLQL            AKLVVDLEYPV +W ADL    
Sbjct: 42  VSACLNHLLLSTSASKPLSFHYLLQLLQGLLPTIHQSFAKLVVDLEYPVGRWRADLVDGY 101

Query: 89  LIGAIATFPFLRSEPNSELPFNGGYPS---EISIVP---------------KTSFRGLEN 139
           L  ++     L S   S         S    +S++                K    GLE 
Sbjct: 102 LNYSLNLLDLLNSISFSLTQLGNSRVSLSYALSLIQSSPAMAVSRLKPIALKRYSEGLEI 161

[Close]
BLAST of Lcy03g000830 vs. ExPASy TrEMBL
Match: A0A1S4E356 (UPF0496 protein 4-like OS=Cucumis melo OX=3656 GN=LOC107991802 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 54/140 (38.57%), Postives = 67/140 (47.86%), Query Frame = 0 

Query: 29  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSI 88
           VS+ LN LLLS+   K LSF +LLQL            AKLVVDLEYPV +W ADL    
Sbjct: 42  VSACLNHLLLSTSASKPLSFHYLLQLLQGLLPTIHQSFAKLVVDLEYPVGRWRADLVDGY 101

Query: 89  LIGAIATFPFLRSEPNSELPFNGGYPS---EISIVP---------------KTSFRGLEN 139
           L  ++     L S   S         S    +S++                K    GLE 
Sbjct: 102 LNYSLNLLDLLNSISFSLTQLGNSRVSLSYALSLIQSSPAMAVSRLKPIALKRYSEGLEI 161

[Close]
BLAST of Lcy03g000830 vs. NCBI nr
Match: XP_038896303.1 (protein BPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-13
Identity = 64/140 (45.71%), Postives = 73/140 (52.14%), Query Frame = 0 

Query: 29  VSSWLNQLLLSSFDLKLLSFQWLLQL------------AKLVVDLEYPVEKWGADLFFSI 88
           VSS LNQLLLS+ DLK LSF+WLLQL            AKLVVDLEYPV KWGADL    
Sbjct: 40  VSSCLNQLLLSTSDLKSLSFRWLLQLLQGLIPSIHQAFAKLVVDLEYPVGKWGADLVDGY 99

Query: 89  LIGAIATFPFLRSEPNSELPFNGGYPS--------------EIS----IVPKTSFRGLEN 139
           L  ++     L S   S         S               +S    IV K SF G E 
Sbjct: 100 LNYSLNLLDLLNSISFSLAQLRNSRVSLSYALSLIQSSPLMAVSRLKPIVLKRSFEGSEI 159

[Close]
BLAST of Lcy03g000830 vs. NCBI nr
Match: KAG6593278.1 (Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-11
Identity = 61/142 (42.96%), Postives = 72/142 (50.70%), Query Frame = 0 

Query: 28  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSI 87
           +VSS LNQLLLSS D   LSF WLLQL           AKLVVDL+ PV KWGADL    
Sbjct: 40  EVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDGY 99

Query: 88  LIGAIATFPFLRSEP-------NSELPFNGGYPSEI-------------SIVPKTSFRGL 139
           L  ++     L S         NS L     Y   +              IV K +F GL
Sbjct: 100 LNYSLNLLDLLNSVSFSLSQLGNSRLSL--AYALSLVRSSPLMAVARLKPIVMKRNFMGL 159

[Close]
BLAST of Lcy03g000830 vs. NCBI nr
Match: XP_023514538.1 (protein BPS1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-11
Identity = 61/142 (42.96%), Postives = 72/142 (50.70%), Query Frame = 0 

Query: 28  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSI 87
           +VSS LNQLLLSS D   LSF WLLQL           AKLVVDL+ PV KWGADL    
Sbjct: 40  EVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHRAFAKLVVDLDCPVAKWGADLVDGY 99

Query: 88  LIGAIATFPFLRSEP-------NSELPFNGGYPSEI-------------SIVPKTSFRGL 139
           L  ++     L S         NS L     Y   +              IV K +F GL
Sbjct: 100 LNYSLNLLDLLNSVSFSLSQLGNSRLSL--AYALSLVRSSPLMAVARLNPIVMKRNFMGL 159

[Close]
BLAST of Lcy03g000830 vs. NCBI nr
Match: KAG7025628.1 (Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-11
Identity = 60/142 (42.25%), Postives = 73/142 (51.41%), Query Frame = 0 

Query: 28  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSI 87
           +VSS LNQLLLSS D + LSF WLLQL           AKLVVDL+ PV KWGADL    
Sbjct: 40  EVSSCLNQLLLSSSDSRTLSFHWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDGY 99

Query: 88  LIGAIATFPFLRSEP-------NSELPFNGGYPSEI-------------SIVPKTSFRGL 139
           L  ++     L S         NS L     Y   +              IV K +F G+
Sbjct: 100 LNYSLNLLDLLNSVSFSLSQLGNSRLSL--AYALSLVRSSPLMAVAHLKPIVMKRNFMGV 159

[Close]
BLAST of Lcy03g000830 vs. NCBI nr
Match: XP_022960422.1 (protein BPS1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 60/142 (42.25%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 28  QVSSWLNQLLLSSFDLKLLSFQWLLQL-----------AKLVVDLEYPVEKWGADLFFSI 87
           +VSS LNQLLLSS D   LSF WLLQL           AKLVVDL+ PV KWGADL    
Sbjct: 40  EVSSCLNQLLLSSSDSTTLSFHWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDGY 99

Query: 88  LIGAIATFPFLRSEP-------NSELPFNGGYPSEI-------------SIVPKTSFRGL 139
           L  ++     L S         NS L     Y   +              IV K +F GL
Sbjct: 100 LNYSLNLLDLLNSVSFSLSQLGNSRLSL--AYALSLVRSSPLMAVARLKPIVMKRNFMGL 159

The following BLAST results are available for this feature:
BLAST of Lcy03g000830 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g000830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H7D51.2e-1042.25protein BPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111461156 P... [more]
A0A6J1KTC22.0e-1041.84protein BPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498050 PE=... [more]
A0A6J1JX954.1e-0841.01UPF0496 protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111488317 PE=4 SV=1[more]
A0A5D3CEU02.7e-0738.57UPF0496 protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
A0A1S4E3562.7e-0738.57UPF0496 protein 4-like OS=Cucumis melo OX=3656 GN=LOC107991802 PE=4 SV=1[more]
BLAST of Lcy03g000830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896303.13.0e-1345.71protein BPS1, chloroplastic-like [Benincasa hispida][more]
KAG6593278.18.2e-1142.96Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023514538.18.2e-1142.96protein BPS1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG7025628.18.2e-1142.25Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
XP_022960422.12.4e-1042.25protein BPS1, chloroplastic-like [Cucurbita moschata][more]
BLAST of Lcy03g000830 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g000830.1Lcy03g000830.1mRNA