Lcy03g000610 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000610
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	PsbP domain-containing protein
Location	Chr03: 1644725 .. 1646958 (-)
RNA-Seq Expression	Lcy03g000610
Synteny	Lcy03g000610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCCTCCTCGATTCGTTCTTACCTCGAATTCAAACACCGAGTTCTTCGATTCGCCAAAGGATTCCAAGCACTTCCCCTTCTCCGCGGTGGCCCGTCGATTCATTCCCAAAATGCCGCTCCTCACTCTGCTCTGAATCTCAACCGGTAATTCTTCCAAAAACAAACTACGCTATCTAATCCAACCAATTCTACTCTGTAATCTGCAACTTGTTACTTGCATTTATCGCTGTAGCTTTCTAATATGCAATCAGATTAAAGCCCTTGCAGTTCCGAGGAGGAATGCAATGGCGTTGATCTTGTCGACTTGTATTTTCTCTAATTCTGCATTGGCTGAGCCATCTGTTGGATTATTGGAATACATTGACACTTTTGATGGCTATTCGTTCAAGTACCCTAAGAATTGGATTCAAGTTCGAGGGGCCGGGGCTGATATATTCTTCAGGGATCCGTTTGTTCTTGATGAGAATCTTTCTGTGGAGTTCTCGTCGCCGTCTTCGTCGAGCTATAAGAGCGTTGAGGACTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAGCAGTATTTGACGGAGTTTATGTCTACGAGGCTTGGGGTTAGAAGGGAATCAAACATTCTTTCTACTTCTTCCAGAATGGCAGATGATGGGAGGATTTACTACCAAGTTGAGGTAATGTCAATATTCAGAAGTTTGTTTGATTTGTAGTCAATTTTGGTCCATTTTGGTGAAGGACTTGTTCTTTGTGTGCTGATTTCTCGGGAATGATATTGAAAACCTTTTCTCAAGTTTTCAAAACAAAAGTTTGCCTTTGGTTGAGTGTAATAGCTCTTCCCTCAATAACTTGAAGACAACGTTTTTTAGTGTTTTTAACTACAAAAATCATTTGTCAGCCTGAGCCTAACTGACCTTAGATTAGAGGTTAGTCCTCTCACTAGAGAACTCAAAAACAAAACAAATCATTGCTCATGAAACTTAATAGTAAATAACAGAAAGCCATAAATGGTGCAAGAGCAACATCCCAAAGATTGTTGAGTTGTAACATTCTAGTTTGGTTAGAATCCATTTCCAATTATATGGTTTGGTTCATGTGAGTTTGTGACATTCTAGTTGTCAAACTTTATGTGTATGCATGTAATGTGTTACATATATCTTTCTACCTCTAGAAATGTGAAAGTTAAGCCTTCAACATTAAATGATGTGATGTCACTGAATTAGTCAGTGTACTGACTTCTTTTTCCCATTCTTATTATCAATATTAAGTAATATCCTCAAATTTGATTTTGGTCTTTTCGTTTTTCTTTTCCTTTTTTCCTCTGATGTTGATAGGATCAGTAAAAATGGATCTGTAAATTACTGCTCATCTACTTGACTCACAATTTTGAAAAAAAATCTGGGAATGCCAAAAGTGATGATTGGAAGTGAGTGTAGGTTGTCTATATTTGAACTATACAAGTAGAAACTTGGACTCTAGGCTTAGGTTATAGATTTATAGAAGTTAGTTATTAGTATGGATGCAAATGTCGTTTTTGTTGGTTTGGGTTTGGACTATGAGACTAGTAAACTTGTTGTGTAGATGAACAAACTCATATGCAGAATATAAACTTGTTGTGTAGATGAACAAACTCATATGCAGAATATAAACTTGTTGTGGGGAGATTTGAAGCTCTAACCTCTTGGTTAAGGACACATACATTATGCCAATTGAGTTTTGCTTAGTTTGACATATAAATTTGGCTTCTTAACTTCATGGATTTAGCTATACAAATTGTATCATGACCCACATTTAACTCAAAAGTATATAGATAGACTTTTCTTTCTCTCTCTTTTTTTATTTTTTTAAATTGAAAATAGGTAGATTGTTACTAAAGAGAGATGGAAAATAGTAGATTATTGCGTCAGAGCCAAAGTTTAAGAGGGGAGAAATGATGTTTAAACCCAAATTAGTATTCTGTTTCTTCAAATCATAAGTAACAATCTCTACTCTTTCAATTACGTTGATATCAGGTAAACATAAAGTCATATGCAAACAACAACGAATTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGATCGGAGATATCTCTCAGTTCTTGGAGTCGAAAACAGTCGGCTATACGAGTTAAGATTACAAACACCAGAAAATGTATTTGTAGAAGAAGAAAATGAATTGCGTCAGGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGA

mRNA sequence

ATGGCCGTCCTCCTCGATTCGTTCTTACCTCGAATTCAAACACCGAGTTCTTCGATTCGCCAAAGGATTCCAAGCACTTCCCCTTCTCCGCGGTGGCCCGTCGATTCATTCCCAAAATGCCGCTCCTCACTCTGCTCTGAATCTCAACCGATTAAAGCCCTTGCAGTTCCGAGGAGGAATGCAATGGCGTTGATCTTGTCGACTTGTATTTTCTCTAATTCTGCATTGGCTGAGCCATCTGTTGGATTATTGGAATACATTGACACTTTTGATGGCTATTCGTTCAAGTACCCTAAGAATTGGATTCAAGTTCGAGGGGCCGGGGCTGATATATTCTTCAGGGATCCGTTTGTTCTTGATGAGAATCTTTCTGTGGAGTTCTCGTCGCCGTCTTCGTCGAGCTATAAGAGCGTTGAGGACTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAGCAGTATTTGACGGAGTTTATGTCTACGAGGCTTGGGGTTAGAAGGGAATCAAACATTCTTTCTACTTCTTCCAGAATGGCAGATGATGGGAGGATTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAACGAATTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGATCGGAGATATCTCTCAGTTCTTGGAGTCGAAAACAGTCGGCTATACGAGTTAAGATTACAAACACCAGAAAATGTATTTGTAGAAGAAGAAAATGAATTGCGTCAGGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGA

Coding sequence (CDS)

ATGGCCGTCCTCCTCGATTCGTTCTTACCTCGAATTCAAACACCGAGTTCTTCGATTCGCCAAAGGATTCCAAGCACTTCCCCTTCTCCGCGGTGGCCCGTCGATTCATTCCCAAAATGCCGCTCCTCACTCTGCTCTGAATCTCAACCGATTAAAGCCCTTGCAGTTCCGAGGAGGAATGCAATGGCGTTGATCTTGTCGACTTGTATTTTCTCTAATTCTGCATTGGCTGAGCCATCTGTTGGATTATTGGAATACATTGACACTTTTGATGGCTATTCGTTCAAGTACCCTAAGAATTGGATTCAAGTTCGAGGGGCCGGGGCTGATATATTCTTCAGGGATCCGTTTGTTCTTGATGAGAATCTTTCTGTGGAGTTCTCGTCGCCGTCTTCGTCGAGCTATAAGAGCGTTGAGGACTTGGGACCTCCTGAAGAAGCGGGGAAGAAAGTGCTGAAGCAGTATTTGACGGAGTTTATGTCTACGAGGCTTGGGGTTAGAAGGGAATCAAACATTCTTTCTACTTCTTCCAGAATGGCAGATGATGGGAGGATTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAACGAATTGGCAGTAATGCCACAGGATCGGGTGGTTCGTCTGGAATGGGATCGGAGATATCTCTCAGTTCTTGGAGTCGAAAACAGTCGGCTATACGAGTTAAGATTACAAACACCAGAAAATGTATTTGTAGAAGAAGAAAATGAATTGCGTCAGGTTATGGATTCTTTCAGAGTCAACAAAGTGAATGCATGA

Protein sequence

MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRWPVDSFPKCRSSLCSESQPIKALAVPRRNAMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKVNA

Homology

[Close]

BLAST of Lcy03g000610 vs. ExPASy Swiss-Prot
Match: O23403 (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.9e-84
Identity = 167/245 (68.16%), Postives = 196/245 (80.00%), Query Frame = 0


Query: 33  PVDSFPKCRSSLCSESQPIKAL----------AVPRRNA--MALILSTCIFSN----SAL 92
           P+ S PK +S+  ++ +   A+          AV RR +  M L++S  I S     +A 
Sbjct: 44  PISSGPKYQSAKSAKPESPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAF 103

Query: 93  AEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYK 152
           A   V   EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP VLDENLSVEFSSPSSS+Y 
Sbjct: 104 ASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYT 163

Query: 153 SVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRIYYQVEVNIKSY 212
           S+EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG++YYQVEVNIKSY
Sbjct: 164 SLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSY 223

Query: 213 ANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSF 262
           ANNNELAVMPQDRV RLEW+RRYL+VLGVEN RLY +RLQTPE VF+EEE +LR+VMDSF
Sbjct: 224 ANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSF 283

[Close]

BLAST of Lcy03g000610 vs. ExPASy TrEMBL
Match: A0A6J1HAH2 (psbP domain-containing protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462051 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.7e-127
Identity = 241/264 (91.29%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRW-PVDSFPKCRSSLCSESQPIKALAVPRR 60
           MAV+LDSFLP I T SSS R+ IP+ S SPRW P+DS PKCR SL SESQPIKALAVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPIKALAVPRR 60

Query: 61  NAMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           +AMALILS+CIFSNSALAE SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSS YKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Lcy03g000610 vs. ExPASy TrEMBL
Match: A0A6J1HY63 (psbP domain-containing protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467914 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.2e-126
Identity = 239/264 (90.53%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRW-PVDSFPKCRSSLCSESQPIKALAVPRR 60
           MAV+LDSFLP I T SSS R+ IP+ SPSPRW P+DS PK R SL SES+PIKALAVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60

Query: 61  NAMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           +AMALILS+CIFSNSA+AE SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSS YKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Lcy03g000610 vs. ExPASy TrEMBL
Match: A0A5D3E4R5 (PsbP domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00220 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.9e-123
Identity = 238/263 (90.49%), Postives = 244/263 (92.78%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRWPVDSFPKCRSSLCSESQPIKALAVPRRN 60
           MAV+L SFLP IQT +S IRQRIPSTS S R P+ SFPKC    CS+SQ IK +AVPRRN
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTS-STRSPIISFPKC----CSQSQSIKDVAVPRRN 60

Query: 61  AMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120
           AMALILSTCIFSNSA A PSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD
Sbjct: 61  AMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120

Query: 121 ENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180
           ENLSVEFSSPSSS Y SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA
Sbjct: 121 ENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180

Query: 181 DDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240
           DDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN
Sbjct: 181 DDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240

Query: 241 VFVEEENELRQVMDSFRVNKVNA 264
           VFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 VFVEEENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Lcy03g000610 vs. ExPASy TrEMBL
Match: A0A1S3CLM8 (psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502232 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.9e-123
Identity = 238/263 (90.49%), Postives = 244/263 (92.78%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRWPVDSFPKCRSSLCSESQPIKALAVPRRN 60
           MAV+L SFLP IQT +S IRQRIPSTS S R P+ SFPKC    CS+SQ IK +AVPRRN
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTS-STRSPIISFPKC----CSQSQSIKDVAVPRRN 60

Query: 61  AMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120
           AMALILSTCIFSNSA A PSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD
Sbjct: 61  AMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120

Query: 121 ENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180
           ENLSVEFSSPSSS Y SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA
Sbjct: 121 ENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180

Query: 181 DDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240
           DDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN
Sbjct: 181 DDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240

Query: 241 VFVEEENELRQVMDSFRVNKVNA 264
           VFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 VFVEEENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Lcy03g000610 vs. ExPASy TrEMBL
Match: A0A6J1DTH5 (psbP domain-containing protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023855 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.8e-121
Identity = 236/272 (86.76%), Postives = 250/272 (91.91%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPST--SPSPRWPVDSFPKCRSSLC--SESQPIKALAV 60
           MAV+LDS  P I + SSSIR+RIP+T  SPSPRWP DSFPK R+SL   S+SQ IKALAV
Sbjct: 1   MAVILDSLSPPIHSLSSSIRRRIPTTLPSPSPRWPTDSFPKSRASLISQSQSQTIKALAV 60

Query: 61  PRRNAMALILSTCIFS----NSALAE-PSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADI 120
           PRR+AMALILSTCIFS    N+ALA+ PS GLLEYIDTFDGYSFKYPKNWIQVRGAGADI
Sbjct: 61  PRRSAMALILSTCIFSNTNTNTALADPPSPGLLEYIDTFDGYSFKYPKNWIQVRGAGADI 120

Query: 121 FFRDPFVLDENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN 180
           FFRDP+VLDENLSVEFSSPSSS YKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN
Sbjct: 121 FFRDPYVLDENLSVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN 180

Query: 181 ILSTSSRMADDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLY 240
           +LSTSSR ADDG+ YYQVEVNIKSYAN+NELAVMPQDRVVRLEWDRRYLSVLGVENSRLY
Sbjct: 181 VLSTSSRTADDGKTYYQVEVNIKSYANSNELAVMPQDRVVRLEWDRRYLSVLGVENSRLY 240

Query: 241 ELRLQTPENVFVEEENELRQVMDSFRVNKVNA 264
           ELRLQTPENVFVEEENELRQVMDSFRVN+VNA
Sbjct: 241 ELRLQTPENVFVEEENELRQVMDSFRVNRVNA 272

[Close]

BLAST of Lcy03g000610 vs. NCBI nr
Match: XP_022961486.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita moschata] >KAG6590498.1 PsbP domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024032.1 PsbP domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 464.2 bits (1193), Expect = 7.7e-127
Identity = 241/264 (91.29%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRW-PVDSFPKCRSSLCSESQPIKALAVPRR 60
           MAV+LDSFLP I T SSS R+ IP+ S SPRW P+DS PKCR SL SESQPIKALAVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPIKALAVPRR 60

Query: 61  NAMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           +AMALILS+CIFSNSALAE SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSS YKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Lcy03g000610 vs. NCBI nr
Match: XP_022968780.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 461.1 bits (1185), Expect = 6.5e-126
Identity = 239/264 (90.53%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRW-PVDSFPKCRSSLCSESQPIKALAVPRR 60
           MAV+LDSFLP I T SSS R+ IP+ SPSPRW P+DS PK R SL SES+PIKALAVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60

Query: 61  NAMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           +AMALILS+CIFSNSA+AE SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSS YKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Lcy03g000610 vs. NCBI nr
Match: XP_004139523.1 (psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KAE8652838.1 hypothetical protein Csa_022829 [Cucumis sativus])

HSP 1 Score: 458.4 bits (1178), Expect = 4.2e-125
Identity = 239/263 (90.87%), Postives = 247/263 (93.92%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRWPVDSFPKCRSSLCSESQPIKALAVPRRN 60
           MAV+LDSFLP IQT SSS RQRIPSTS S RWP++SFPKC    CSESQ IK +AVPRR+
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTS-STRWPMNSFPKC----CSESQSIKGVAVPRRS 60

Query: 61  AMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120
           AMAL+LSTCIFSNSALA  SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD
Sbjct: 61  AMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120

Query: 121 ENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180
           ENLSVEFSSPSSS Y SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA
Sbjct: 121 ENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180

Query: 181 DDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240
           DDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN
Sbjct: 181 DDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240

Query: 241 VFVEEENELRQVMDSFRVNKVNA 264
           VFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 VFVEEENDLRQVMDSFRVNKVNA 258

[Close]

BLAST of Lcy03g000610 vs. NCBI nr
Match: XP_023515691.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.6 bits (1176), Expect = 7.2e-125
Identity = 238/264 (90.15%), Postives = 247/264 (93.56%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRW-PVDSFPKCRSSLCSESQPIKALAVPRR 60
           MAV+LDSFLP I T +SS R+ IP+ S SPRW P+DS PK R SL SESQPIK LAVPRR
Sbjct: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60

Query: 61  NAMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           +AMALILS+CIFSNSALAE SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSS YKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENELRQVMDSFRVNKVNA 264
           NVFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Lcy03g000610 vs. NCBI nr
Match: XP_008464319.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo] >KAA0035717.1 psbP domain-containing protein 1 [Cucumis melo var. makuwa] >TYK30829.1 psbP domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 451.8 bits (1161), Expect = 4.0e-123
Identity = 238/263 (90.49%), Postives = 244/263 (92.78%), Query Frame = 0


Query: 1   MAVLLDSFLPRIQTPSSSIRQRIPSTSPSPRWPVDSFPKCRSSLCSESQPIKALAVPRRN 60
           MAV+L SFLP IQT +S IRQRIPSTS S R P+ SFPKC    CS+SQ IK +AVPRRN
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTS-STRSPIISFPKC----CSQSQSIKDVAVPRRN 60

Query: 61  AMALILSTCIFSNSALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120
           AMALILSTCIFSNSA A PSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD
Sbjct: 61  AMALILSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLD 120

Query: 121 ENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180
           ENLSVEFSSPSSS Y SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA
Sbjct: 121 ENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMA 180

Query: 181 DDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240
           DDGR YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN
Sbjct: 181 DDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPEN 240

Query: 241 VFVEEENELRQVMDSFRVNKVNA 264
           VFVEEENELRQVMDSFRVNKVNA
Sbjct: 241 VFVEEENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Lcy03g000610 vs. TAIR 10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 312.4 bits (799), Expect = 3.5e-85
Identity = 167/245 (68.16%), Postives = 196/245 (80.00%), Query Frame = 0


Query: 33  PVDSFPKCRSSLCSESQPIKAL----------AVPRRNA--MALILSTCIFSN----SAL 92
           P+ S PK +S+  ++ +   A+          AV RR +  M L++S  I S     +A 
Sbjct: 44  PISSGPKYQSAKSAKPESPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAF 103

Query: 93  AEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYK 152
           A   V   EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP VLDENLSVEFSSPSSS+Y 
Sbjct: 104 ASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYT 163

Query: 153 SVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRIYYQVEVNIKSY 212
           S+EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG++YYQVEVNIKSY
Sbjct: 164 SLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSY 223

Query: 213 ANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSF 262
           ANNNELAVMPQDRV RLEW+RRYL+VLGVEN RLY +RLQTPE VF+EEE +LR+VMDSF
Sbjct: 224 ANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSF 283

[Close]

BLAST of Lcy03g000610 vs. TAIR 10
Match: AT4G15510.3 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 309.7 bits (792), Expect = 2.3e-84
Identity = 157/204 (76.96%), Postives = 178/204 (87.25%), Query Frame = 0


Query: 62  MALILSTCIFSN----SALAEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPF 121
           M L++S  I S     +A A   V   EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP 
Sbjct: 3   MGLLMSGLIVSQANLPTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPV 62

Query: 122 VLDENLSVEFSSPSSSSYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSS 181
           VLDENLSVEFSSPSSS+Y S+EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSS
Sbjct: 63  VLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSS 122

Query: 182 RMADDGRIYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQT 241
           R+ADDG++YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL+VLGVEN RLY +RLQT
Sbjct: 123 RVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQT 182

Query: 242 PENVFVEEENELRQVMDSFRVNKV 262
           PE VF+EEE +LR+VMDSFRV K+
Sbjct: 183 PEKVFLEEEKDLRRVMDSFRVEKI 205

[Close]

BLAST of Lcy03g000610 vs. TAIR 10
Match: AT4G15510.2 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 198.4 bits (503), Expect = 7.4e-51
Identity = 111/182 (60.99%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 33  PVDSFPKCRSSLCSESQPIKAL----------AVPRRNA--MALILSTCIFSN----SAL 92
           P+ S PK +S+  ++ +   A+          AV RR +  M L++S  I S     +A 
Sbjct: 44  PISSGPKYQSAKSAKPESPVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAF 103

Query: 93  AEPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYK 152
           A   V   EYIDTFDGYSFKYP+NWIQVRGAGADIFFRDP VLDENLSVEFSSPSSS+Y 
Sbjct: 104 ASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYT 163

Query: 153 SVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRIYYQVEVNIKSY 199
           S+EDLG PEE GK+VL+QYLTEFMSTRLGV+R++NILSTSSR+ADDG++YYQVEV+    
Sbjct: 164 SLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVSQSQV 223

[Close]

BLAST of Lcy03g000610 vs. TAIR 10
Match: AT2G39470.1 (PsbP-like protein 2 )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 36/178 (20.22%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 86  YIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYKSVEDLGPPE 145
           ++D  DGYS+ YP +W +      D  F+D ++  +N+ V F     +    + ++GP E
Sbjct: 91  FVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKN---DIHEVGPME 150

Query: 146 EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRIYYQVEVNIKS--YANNNELA 205
           E    ++K         +     +   +       +DG+ YY  E  +++  YA  +   
Sbjct: 151 EVVYDLVKH--------KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS--- 210

Query: 206 VMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 262
                            + + V N+R Y L +   E  + + + +L+ V DS ++ ++
Sbjct: 211 ----------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of Lcy03g000610 vs. TAIR 10
Match: AT2G39470.2 (PsbP-like protein 2 )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 36/178 (20.22%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 86  YIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSSYKSVEDLGPPE 145
           ++D  DGYS+ YP +W +      D  F+D ++  +N+ V F     +    + ++GP E
Sbjct: 83  FVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKN---DIHEVGPME 142

Query: 146 EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRIYYQVEVNIKS--YANNNELA 205
           E    ++K         +     +   +       +DG+ YY  E  +++  YA  +   
Sbjct: 143 EVVYDLVKH--------KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS--- 202

Query: 206 VMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENELRQVMDSFRVNKV 262
                            + + V N+R Y L +   E  + + + +L+ V DS ++ ++
Sbjct: 203 ----------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 230

The following BLAST results are available for this feature:

BLAST of Lcy03g000610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23403	4.9e-84	68.16	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lcy03g000610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAH2	3.7e-127	91.29	psbP domain-containing protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HY63	3.2e-126	90.53	psbP domain-containing protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3E4R5	1.9e-123	90.49	PsbP domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CLM8	1.9e-123	90.49	psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1DTH5	6.8e-121	86.76	psbP domain-containing protein 1, chloroplastic OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lcy03g000610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961486.1	7.7e-127	91.29	psbP domain-containing protein 1, chloroplastic [Cucurbita moschata] >KAG6590498...	[more]
XP_022968780.1	6.5e-126	90.53	psbP domain-containing protein 1, chloroplastic [Cucurbita maxima]	[more]
XP_004139523.1	4.2e-125	90.87	psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KA...	[more]
XP_023515691.1	7.2e-125	90.15	psbP domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_008464319.1	4.0e-123	90.49	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m...	[more]

BLAST of Lcy03g000610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15510.1	3.5e-85	68.16	Photosystem II reaction center PsbP family protein	[more]
AT4G15510.3	2.3e-84	76.96	Photosystem II reaction center PsbP family protein	[more]
AT4G15510.2	7.4e-51	60.99	Photosystem II reaction center PsbP family protein	[more]
AT2G39470.1	1.0e-04	20.22	PsbP-like protein 2	[more]
AT2G39470.2	1.0e-04	20.22	PsbP-like protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 83..258 e-value: 2.7E-48 score: 164.0
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 77..258 e-value: 1.2E-51 score: 177.1
None	No IPR available	PANTHER	PTHR31407:SF15	PSBP DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC	coord: 42..262
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 42..262
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 86..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000610.1	Lcy03g000610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding