Lcy03g000570 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000570
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr03: 1588358 .. 1591295 (+)
RNA-Seq Expression	Lcy03g000570
Synteny	Lcy03g000570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCAAAGTTTCCTTCTAACCCTGATGAGAAGGCAATCAAAGCAGTAACAGATTGCGTTTTATCCAAGATCCCAGAGCAACTTAAAAACGAGCTGGATCTCCCATATACTAGAAATGAGGTGGAGCTTTCCATGAAGATGATTAGTCCATCAAAAGCCCCAAGAATGGATGGTACTCATGCTAGCTTTTACCAATCCTTTTGGAATGTGGTAGGGGAAGAAACTGTAAATGTTTGTCTCCAAATTCTTAACGAAGGAGCCGATTTATCCCCTTTAAATAAAACGACGATCGCTCTTATCCCCAAAGTGCAGGACCCTAGGCACATGAATGAGTTTAGGCCAATCAGTCTATGCAATACTAGCTATAAAATCATCTCCAAAGCTATTGCTAACAGGTTCAAGAAAGTCCTTGATTTGATCATCTCTCCCTCCCAGGCGGCTTTTATCCCAGGACGGCTTATATCTGATAATGTTATTCTTGGGTTCAAGTGCATTCACTCTATTAGAAGCAAGAAGAAAGGCAAAGAAGGGCAAGTGGCCATTAAGGTCGACATGAGCAAAGCTTATGACCGAGTTGAATGGAGCTTCATTCGGAATATGCTCTCTAGAATGGTGTTTGGTAATAGATGGATTTCTAATATCATGAGATGTGTGGAATCGGTCTCTTTCTCAGTGCTGATCAACGGTAGCCCTCATGAGGAGTTCAAGCCATCCAGAGGGGTTAGGCAAGGGGATCCCTTATCCCCCTATCTCTTTCTGGTGTGTGCAGAAGGCTTCTCGAGTCTATTATCCAGGGAAGTAGAGTTAAACAATTTGAAAGGCTTTCGTATTAATAACCATTGTCCTACGATATCGCACTTATTCTTCGCTGATGATAGTCTTATTTTTTGCAGGTCCGACAGGAGAGAATGCAAGTGATCAAGCAAGTCTTCCAATCCTACGAAGAGGCTTTGGGGCAAAGTATAAATTTGGAGAAATTCATGTTTATGGTCAGCAAAAATGTCTCGAGTGAGGAAGCTAATGGGATTAGAGAGATTCTTGGTATCAAGAGAACGAGTTCATTAGGGGTGTATCTAGGAATGCCTTCCCAAAATTCAAAAAAGAAATCCTCCCTCTTTGTGAAAATTAAAACAAGGGTTGAAAGTCTTTTGCAAGGCTGGAATGAGAAATTATTTTCAGTAGTGGGTAAAGAGATTTTAATTAAAGCAGTCATTCAGGCCATCTCGACATACACCATGAGTTGTTTTAGGCTCCCCAAAGGCCTTTGCGACGATATTAATAAGCTGTGTGCAAAATTTTGGTGGGGAGCCACAGGGGATAAAAGGAAAATTCATTGGGCTAGATGGAGCAAACTTTGCAAGAGTAAGGTGAGAGGGGGGTTGGGCTTTAGAGATCTTAATGCCTTTAACCAAGCTCTCCTTGCAAAGCAAAGTTGGAGAATTACTAAGAATCCAAATAGCCTTATGAGCAAAGTCCTTAAAGGTCGATACTTTAAAGATGGAAATTTCCTGGCGGCAAAGGTGGGTGGGAATGCGTCTCTAGTGTGGAAGAGTATTGTGTTGGGAAAAGAGCTTTTCTTAGAAGGATATAGATGGCGAGTGGGCAACGATGAATATATCTATATCGGCCAGGATCCTTGGATCCCAAGGCTAGGTTTCAAGCATCCTATGGTGGTTCCCCATGAATTGATTGGTAAAAGAGTGAAAGATCTGCTCAAAGAGAATGGAGATTGGGATGAAGACCTGATCAAAAGACTTTTTTTACCCTTAGTTGTAGAAGACATCCTCGCGATTCCTAGAGGGGACAAAAGCATGAGGGATGAGATCATCTGGGAGGCGGATTCTAAAGGGGTTTTCAGTGTCAAAAGTGCATATCATCTAGTTGAGAACAAGAAGGGAGCTATGGAGGCTTCTAGTTCGAATGTAACGGCCCGTGAGCAAAGATGGAAATTCCTTTGGAGCCTTGATGTTATCCCTAGAGCGAAAATTGGCTTATGGAAGATCCTTAACAATCTGATTCCTTCGAAAGAAAATCTGTTGGCTAGAGGTTTAGATATTAACCCAACTTGTGATCTATGTAGGAAGCATAAGGAGACAGCTAGCCATATTTTCTGGAACTGTAAAAAGGTGAGTCACATCTGGTCAAACATTTTTCCTAATCTTATGGATATTTTGGGTCTTTGCAGGGCCAATAACAATTTGGGAGAATGGTGGGATGAGCTAACCAAGAAGATCAACAAAGAGGATGCTGAGAAGATTGCAGTAACTCTTTGGACAATATGGACATTCAGAAACAAAGTGACAAGCAGCAAAGATCAAGCATCAGAGACTCAAATTGACAATGTGGGCTAAACGAAATTTGGAGGAGCAAAGAAGGCGGTCAATTCCGAACCTGGCAGATTCAAGGCTGGAGAGTCTGGGGAATCATGAGCGCTGGTCTCCCCCACCCCCTAACTGCTACAAGCTGAACGCGGATGCGTCTTGGAATGAAAATCTGTTGATTGGAGGGGTGGGTTGGATAATTCGTGATTCCTCATGATCTTTAGTTCTGGCAGGCTGCAAAAGTCTCAAATTCAGATGGCCTATTAAATCGTTGGAAGCTCTAGCAATCAAAGAGGGTCTGAAAGCTTACTCGAGTTATGGTGGATCATTGAAGCCTCCATTGATGGTTGAATCAGACGCCCTGGAGATCATTCGAGCGCTGAATTTCGAATGTGGAGATATCTCTGACTCCGCAATCGTGCTTAATGATGTGAGATTTTTGGCTCCGTCTGCAGGCGTTATCTCGTTCGGGAAAAGCCCTCGGGCTGGTAATTGTGTTGCGCATTGTCTTGCGCGTGCAGCAGCGAATCTTCGGCCGGTGCATTCCCTGTCGTCGACAGTCTTTTGGAGTCCCCCCTTTCTTCCACGTTGGAAGATCGATTTTTTTTTTGTAG

mRNA sequence

ATGAAATCAAAGTTTCCTTCTAACCCTGATGAGAAGGCAATCAAAGCAGTAACAGATTGCGTTTTATCCAAGATCCCAGAGCAACTTAAAAACGAGCTGGATCTCCCATATACTAGAAATGAGGTGGAGCTTTCCATGAAGATGATTAGTCCATCAAAAGCCCCAAGAATGGATGGTACTCATGCTAGCTTTTACCAATCCTTTTGGAATGTGGTAGGGGAAGAAACTGTAAATGTTTGTCTCCAAATTCTTAACGAAGGAGCCGATTTATCCCCTTTAAATAAAACGACGATCGCTCTTATCCCCAAAGTGCAGGACCCTAGGCACATGAATGAGTTTAGGCCAATCAGTCTATGCAATACTAGCTATAAAATCATCTCCAAAGCTATTGCTAACAGGTTCAAGAAAGTCCTTGATTTGATCATCTCTCCCTCCCAGGCGGCTTTTATCCCAGGACGGCTTATATCTGATAATGTTATTCTTGGGTTCAAGTGCATTCACTCTATTAGAAGCAAGAAGAAAGGCAAAGAAGGGCAAGTGGCCATTAAGGTCGACATGAGCAAAGCTTATGACCGAGTTGAATGGAGCTTCATTCGGAATATGCTCTCTAGAATGGTGTTTGGTAATAGATGGATTTCTAATATCATGAGATGTGTGGAATCGGTCTCTTTCTCAGTGCTGATCAACGGTAGCCCTCATGAGGAGTTCAAGCCATCCAGAGGGGTTAGGCAAGGGGATCCCTTATCCCCCTATCTCTTTCTGATATTAACCCAACTTGTGATCTATGTAGGAAGCATAAGGAGACAGCTAGCCATATTTTCTGGAACTGTAAAAAGGGCCAATAACAATTTGGGAGAATGGTGGGATGAGCTAACCAAGAAGATCAACAAAGAGGATGCTGAGAAGATTGCAGTAACTCTTTGGACAATATGGACATTCAGAAACAAAGTGACAAGCAGCAAAGATCAAGCATCAGAGACTCAAATTGACAATGAGCAAAGAAGGCGGTCAATTCCGAACCTGGCAGATTCAAGGCTGGAGAGTCTGGGGAATCATGAGCGCTGGTCTCCCCCACCCCCTAACTGCTACAAGCTGAACGCGGATGCGTCTTGGAATGAAAATCTGTTGATTGGAGGGGTGGTTCTGGCAGGCTGCAAAAGTCTCAAATTCAGATGGCCTATTAAATCGTTGGAAGCTCTAGCAATCAAAGAGGGTCTGAAAGCTTACTCGAGTTATGGTGGATCATTGAAGCCTCCATTGATGGTTGAATCAGACGCCCTGGAGATCATTCGAGCGCTGAATTTCGAATGTGGAGATATCTCTGACTCCGCAATCGTGCTTAATGATGCGTTATCTCGTTCGGGAAAAGCCCTCGGGCTGGTAATTGTGTTGCGCATTGTCTTGCGCGTGCAGCAGCGAATCTTCGGCCGGTGCATTCCCTGTCGTCGACAGTCTTTTGGAGTCCCCCCTTTCTTCCACGTTGGAAGATCGATTTTTTTTTTGTAG

Coding sequence (CDS)

ATGAAATCAAAGTTTCCTTCTAACCCTGATGAGAAGGCAATCAAAGCAGTAACAGATTGCGTTTTATCCAAGATCCCAGAGCAACTTAAAAACGAGCTGGATCTCCCATATACTAGAAATGAGGTGGAGCTTTCCATGAAGATGATTAGTCCATCAAAAGCCCCAAGAATGGATGGTACTCATGCTAGCTTTTACCAATCCTTTTGGAATGTGGTAGGGGAAGAAACTGTAAATGTTTGTCTCCAAATTCTTAACGAAGGAGCCGATTTATCCCCTTTAAATAAAACGACGATCGCTCTTATCCCCAAAGTGCAGGACCCTAGGCACATGAATGAGTTTAGGCCAATCAGTCTATGCAATACTAGCTATAAAATCATCTCCAAAGCTATTGCTAACAGGTTCAAGAAAGTCCTTGATTTGATCATCTCTCCCTCCCAGGCGGCTTTTATCCCAGGACGGCTTATATCTGATAATGTTATTCTTGGGTTCAAGTGCATTCACTCTATTAGAAGCAAGAAGAAAGGCAAAGAAGGGCAAGTGGCCATTAAGGTCGACATGAGCAAAGCTTATGACCGAGTTGAATGGAGCTTCATTCGGAATATGCTCTCTAGAATGGTGTTTGGTAATAGATGGATTTCTAATATCATGAGATGTGTGGAATCGGTCTCTTTCTCAGTGCTGATCAACGGTAGCCCTCATGAGGAGTTCAAGCCATCCAGAGGGGTTAGGCAAGGGGATCCCTTATCCCCCTATCTCTTTCTGATATTAACCCAACTTGTGATCTATGTAGGAAGCATAAGGAGACAGCTAGCCATATTTTCTGGAACTGTAAAAAGGGCCAATAACAATTTGGGAGAATGGTGGGATGAGCTAACCAAGAAGATCAACAAAGAGGATGCTGAGAAGATTGCAGTAACTCTTTGGACAATATGGACATTCAGAAACAAAGTGACAAGCAGCAAAGATCAAGCATCAGAGACTCAAATTGACAATGAGCAAAGAAGGCGGTCAATTCCGAACCTGGCAGATTCAAGGCTGGAGAGTCTGGGGAATCATGAGCGCTGGTCTCCCCCACCCCCTAACTGCTACAAGCTGAACGCGGATGCGTCTTGGAATGAAAATCTGTTGATTGGAGGGGTGGTTCTGGCAGGCTGCAAAAGTCTCAAATTCAGATGGCCTATTAAATCGTTGGAAGCTCTAGCAATCAAAGAGGGTCTGAAAGCTTACTCGAGTTATGGTGGATCATTGAAGCCTCCATTGATGGTTGAATCAGACGCCCTGGAGATCATTCGAGCGCTGAATTTCGAATGTGGAGATATCTCTGACTCCGCAATCGTGCTTAATGATGCGTTATCTCGTTCGGGAAAAGCCCTCGGGCTGGTAATTGTGTTGCGCATTGTCTTGCGCGTGCAGCAGCGAATCTTCGGCCGGTGCATTCCCTGTCGTCGACAGTCTTTTGGAGTCCCCCCTTTCTTCCACGTTGGAAGATCGATTTTTTTTTTGTAG

Protein sequence

MKSKFPSNPDEKAIKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVGEETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKIISKAIANRFKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLFLILTQLVIYVGSIRRQLAIFSGTVKRANNNLGEWWDELTKKINKEDAEKIAVTLWTIWTFRNKVTSSKDQASETQIDNEQRRRSIPNLADSRLESLGNHERWSPPPPNCYKLNADASWNENLLIGGVVLAGCKSLKFRWPIKSLEALAIKEGLKAYSSYGGSLKPPLMVESDALEIIRALNFECGDISDSAIVLNDALSRSGKALGLVIVLRIVLRVQQRIFGRCIPCRRQSFGVPPFFHVGRSIFFL

Homology

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BLAST of Lcy03g000570 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-29
Identity = 84/268 (31.34%), Postives = 136/268 (50.75%), Query Frame = 0


Query: 22  LSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVGEETVNVCL 81
           L  + E+ K  L+ P T +E+  +++++  +K+P +DG    F+Q FW+ +G +   V  
Sbjct: 434 LPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLT 493

Query: 82  QILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKIISKAIANRFKKVLDLI 141
           +   +G       +  ++L+PK  D R +  +RP+SL +T YKI++KAI+ R K VL  +
Sbjct: 494 EAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEV 553

Query: 142 ISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFIRNM 201
           I P Q+  +PGR I DNV L    +H  R   +       + +D  KA+DRV+  ++   
Sbjct: 554 IHPDQSYTVPGRTIFDNVFLIRDLLHFAR---RTGLSLAFLSLDQEKAFDRVDHQYLIGT 613

Query: 202 LSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLS---------PYL 261
           L    FG +++  +     S    V IN S        RGVRQG PLS         P+L
Sbjct: 614 LQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFL 673

Query: 262 FLI---LTQLVIYVGSIRRQLAIFSGTV 278
            L+   LT LV+    +R  L+ ++  V
Sbjct: 674 CLLRKRLTGLVLKEPDMRVVLSAYADDV 698

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BLAST of Lcy03g000570 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 5.2e-26
Identity = 81/250 (32.40%), Postives = 123/250 (49.20%), Query Frame = 0


Query: 24  KIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVGEETVNVCLQI 83
           K+ +   + L+ P +  E+E  +  +   K+P  DG  A FYQ+F   +      +  +I
Sbjct: 447 KLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKI 506

Query: 84  LNEGADLSPLNKTTIALIPKVQ-DPRHMNEFRPISLCNTSYKIISKAIANRFKKVLDLII 143
             EG   +   + TI LIPK Q DP  +  FRPISL N   KI++K +ANR ++ +  II
Sbjct: 507 EVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAII 566

Query: 144 SPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFIRNML 203
            P Q  FIPG     N+      IH I   K   +  + I +D  KA+D+++  F+  +L
Sbjct: 567 HPDQVGFIPGMQGWFNIRKSINVIHYINKLK--DKNHMIISLDAEKAFDKIQHPFMIKVL 626

Query: 204 SRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLFLILTQLVIY 263
            R      +++ I         ++ +NG   E      G RQG PLSPYLF I+  L + 
Sbjct: 627 ERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIV--LEVL 686

Query: 264 VGSIRRQLAI 273
             +IR+Q  I
Sbjct: 687 ARAIRQQKEI 692

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BLAST of Lcy03g000570 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.4e-23
Identity = 74/268 (27.61%), Postives = 132/268 (49.25%), Query Frame = 0


Query: 20  CVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVGEETVNV 79
           C L ++ ++    L+ P + +E+  +++ +   K+P  DG  + FYQ+F   +    +N+
Sbjct: 435 CHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNL 494

Query: 80  CLQILNEGADLSPLNKTTIALIPKV-QDPRHMNEFRPISLCNTSYKIISKAIANRFKKVL 139
              I  EG   +   +  I LIPK  +DP     +RPISL N   KI++K + NR ++ +
Sbjct: 495 FQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHI 554

Query: 140 DLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFI 199
             II   Q  FIPG     N+      I  I +K K K+  + + +D  KA+D ++  F+
Sbjct: 555 KKIIHHDQVGFIPGSQGWFNIRKSINVIQHI-NKLKNKDHMI-LSIDAEKAFDNIQHPFM 614

Query: 200 RNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLFLILTQ 259
              L ++     ++  I       + ++++NG   + F    G RQG PLSP LF I+ +
Sbjct: 615 IRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVME 674

Query: 260 LV------------IYVGSIRRQLAIFS 275
           ++            I++GS   +L++F+
Sbjct: 675 VLAIAIREEKAIKGIHIGSEEIKLSLFA 700

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BLAST of Lcy03g000570 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-22
Identity = 69/240 (28.75%), Postives = 117/240 (48.75%), Query Frame = 0


Query: 22  LSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVGEETVNVCL 81
           L ++ ++    L+ P T +E+   +  +   K+P  DG  A FYQ +   +    + +  
Sbjct: 438 LPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQ 497

Query: 82  QILNEGADLSPLNKTTIALIPKV-QDPRHMNEFRPISLCNTSYKIISKAIANRFKKVLDL 141
            I  EG   +   + +I LIPK  +D      FRPISL N   KI++K +ANR ++ +  
Sbjct: 498 SIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK 557

Query: 142 IISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFIRN 201
           +I   Q  FIPG     N+      I  I   K   +  V I +D  KA+D+++  F+  
Sbjct: 558 LIHHDQVGFIPGMQGWFNIRKSINVIQHINRAK--DKNHVIISIDAEKAFDKIQQPFMLK 617

Query: 202 MLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLFLILTQLV 261
            L+++     ++  I    +  + ++++NG   E F    G RQG PLSP LF I+ +++
Sbjct: 618 TLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVL 675

[Close]

BLAST of Lcy03g000570 vs. ExPASy Swiss-Prot
Match: P16423 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-09
Identity = 47/161 (29.19%), Postives = 80/161 (49.69%), Query Frame = 0


Query: 101 IPKVQDPRHMNEFRPISLCNTSYKIISKAIANRFKKVLDLIISPSQAAFIPGRLISDNVI 160
           IPK    +   +FRPIS+ +   + ++  +A R    ++    P Q  F+P    +DN  
Sbjct: 403 IPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSINW--DPRQRGFLPTDGCADNAT 462

Query: 161 LGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFIRNMLSRMVFGNRWISNIMRCVE 220
           +    +    S K  +   +A  +D+SKA+D +  + I + L        ++  +    E
Sbjct: 463 IVDLVLR--HSHKHFRSCYIA-NLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYE 522

Query: 221 SVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLF-LILTQLV 261
               S+  +G   EEF P+RGV+QGDPLSP LF L++ +L+
Sbjct: 523 GGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLL 558

[Close]

BLAST of Lcy03g000570 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.0e-69
Identity = 123/245 (50.20%), Postives = 180/245 (73.47%), Query Frame = 0


Query: 14  IKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVG 73
           I+A+ + + ++I  ++  +L  PYT+ E+EL+++ + P+KA   DG  A FYQ++W+VVG
Sbjct: 567 IEAIINLIPTRITSEVNEQLLAPYTKEEIELAIRQMFPTKALGPDGFPALFYQTYWHVVG 626

Query: 74  EETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKIISKAIANR 133
            +T+  CL  LN G D+   N T IALIPK++ PR +++FRPISLCN SYKIISK+I NR
Sbjct: 627 PKTLEACLNALNNGDDIKKWNSTYIALIPKIKQPRSISDFRPISLCNVSYKIISKSITNR 686

Query: 134 FKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRV 193
            K V+ L+IS +Q+AF+P R ISDNVI+G +C+H+I S K G  G  A+K+D+SKA+DRV
Sbjct: 687 LKNVIGLVISDAQSAFVPSRAISDNVIIGHECLHTINSCKSGLIGMAALKLDLSKAFDRV 746

Query: 194 EWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLF 253
           EW+++  ++ +M F   WI  I++C+ +V FS+ +NGSP   F+PSRG+RQGDPLSPYLF
Sbjct: 747 EWTYLECIMRKMGFNEGWIQAIIQCISTVRFSIHLNGSPGGCFQPSRGIRQGDPLSPYLF 806

Query: 254 LILTQ 259
           L+  +
Sbjct: 807 LLCAE 811

[Close]

BLAST of Lcy03g000570 vs. ExPASy TrEMBL
Match: A0A7N2LIH6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.2e-69
Identity = 127/232 (54.74%), Postives = 170/232 (73.28%), Query Frame = 0


Query: 24   KIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVGEETVNVCLQI 83
            ++  ++ +EL   +   EV  +++ + P+KAP  DG    FYQ +W++VG    N  LQ 
Sbjct: 1111 RVTPEMNDELQKEFKAVEVWQALQQMHPTKAPGPDGMSPIFYQKYWDIVGSSVTNCVLQA 1170

Query: 84   LNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKIISKAIANRFKKVLDLIIS 143
            LN G     +NKT I LIPK ++P+ + EFRPISLCN  YKIISK +ANR KKVL  +I 
Sbjct: 1171 LNSGVMPKDINKTYICLIPKTKNPQKITEFRPISLCNVIYKIISKVLANRLKKVLHGVID 1230

Query: 144  PSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFIRNMLS 203
             +Q+AF+PGR+I+DNVI+ F+ +HSI  ++KGKEG +AIK+DMSKAYDRVEW+++ +M+ 
Sbjct: 1231 EAQSAFVPGRMITDNVIVAFESMHSINQRRKGKEGLMAIKLDMSKAYDRVEWAYLESMMK 1290

Query: 204  RMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLFLI 256
            +M FG+RWIS IM CV SVSFSVLING P   F PSRG+RQGDP+SPYLFL+
Sbjct: 1291 KMGFGDRWISLIMMCVTSVSFSVLINGEPKGSFTPSRGLRQGDPISPYLFLL 1342

[Close]

BLAST of Lcy03g000570 vs. ExPASy TrEMBL
Match: A0A2N9J3U0 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59177 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-68
Identity = 125/252 (49.60%), Postives = 179/252 (71.03%), Query Frame = 0


Query: 7    SNPDEKAIKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQ 66
            SNP   AI  V   V   + +++ + L  P+T  E+  ++  + P+KAP  DG +A FYQ
Sbjct: 890  SNP--SAIAQVVHSVSKTVTQRMNDVLLAPFTSEEIRSALFQMHPTKAPGPDGMNAMFYQ 949

Query: 67   SFWNVVGEETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKII 126
             FW++VG++  N  L+ L+ G  L  +N T I LIPK+  P  M +FRPISLCN  YKII
Sbjct: 950  KFWHIVGDDVTNAVLEFLHSGKMLKSVNFTHITLIPKIPSPELMTQFRPISLCNVLYKII 1009

Query: 127  SKAIANRFKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDM 186
            SK +ANR K VLD IIS +Q+AF+PGRLI+DN+++ F+ +H +++K+KG+   +A+K+DM
Sbjct: 1010 SKVLANRLKTVLDHIISDNQSAFVPGRLITDNILVAFEALHYMKTKRKGRSTHMAVKLDM 1069

Query: 187  SKAYDRVEWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGD 246
            SKAYDRVEW+F+ NM+ ++ F  RW++ IM+C+ SVS+SV++NG P    KP+RG+RQGD
Sbjct: 1070 SKAYDRVEWNFLENMMMKLGFDQRWVNLIMQCLTSVSYSVMLNGEPTGYIKPTRGIRQGD 1129

Query: 247  PLSPYLFLILTQ 259
            PLSPYLFLI  +
Sbjct: 1130 PLSPYLFLICAE 1139

[Close]

BLAST of Lcy03g000570 vs. ExPASy TrEMBL
Match: A0A2N9FNH6 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16381 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-68
Identity = 125/252 (49.60%), Postives = 179/252 (71.03%), Query Frame = 0


Query: 7   SNPDEKAIKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQ 66
           SNP   AI  V   V   + +++ + L  P+T  E+  ++  + P+KAP  DG +A FYQ
Sbjct: 529 SNP--SAIAQVVHSVSKTVTQRMNDVLLAPFTSEEIRSALFQMHPTKAPGPDGMNAMFYQ 588

Query: 67  SFWNVVGEETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKII 126
            FW++VG++  N  L+ L+ G  L  +N T I LIPK+  P  M +FRPISLCN  YKII
Sbjct: 589 KFWHIVGDDVTNAVLEFLHSGKMLKSVNFTHITLIPKIPSPELMTQFRPISLCNVLYKII 648

Query: 127 SKAIANRFKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDM 186
           SK +ANR K VLD IIS +Q+AF+PGRLI+DN+++ F+ +H +++K+KG+   +A+K+DM
Sbjct: 649 SKVLANRLKTVLDHIISDNQSAFVPGRLITDNILVAFEALHYMKTKRKGRSTHMAVKLDM 708

Query: 187 SKAYDRVEWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGD 246
           SKAYDRVEW+F+ NM+ ++ F  RW++ IM+C+ SVS+SV++NG P    KP+RG+RQGD
Sbjct: 709 SKAYDRVEWNFLENMMMKLGFDQRWVNLIMQCLTSVSYSVMLNGEPTGYIKPTRGIRQGD 768

Query: 247 PLSPYLFLILTQ 259
           PLSPYLFLI  +
Sbjct: 769 PLSPYLFLICAE 778

[Close]

BLAST of Lcy03g000570 vs. ExPASy TrEMBL
Match: A0A2N9HPU0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44029 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-68
Identity = 132/274 (48.18%), Postives = 187/274 (68.25%), Query Frame = 0


Query: 2   KSKFPSNPDEKAIKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTH 61
           ++  P N +E A+  V + +  ++   L +E    +T  EVEL++K ++P KAP  DG  
Sbjct: 420 RTSIPENIEE-AVAHVPNLISQEVNTSLTSE----FTAREVELALKQMAPLKAPGPDGMP 479

Query: 62  ASFYQSFWNVVGEETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNT 121
             F+Q++W VVG E     L  LN G  L+ +N T I LIPKV++P  + EFRPISLCN 
Sbjct: 480 PLFFQTYWKVVGPEVTQGVLSCLNSGRILNNINHTFITLIPKVKNPERITEFRPISLCNV 539

Query: 122 SYKIISKAIANRFKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVA 181
           +YK+ISK IANR K +L  IIS +Q+AF+PGRLI+DNV++ F+ +H + S K GK+G +A
Sbjct: 540 TYKLISKVIANRLKGILPSIISEAQSAFVPGRLITDNVLIAFETLHHMHSTKIGKDGAMA 599

Query: 182 IKVDMSKAYDRVEWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRG 241
           +K+DMSKAYDRVEWSF+  ++ +M F  RW+S IM C+ +VS+S+L+NG PH   KPSRG
Sbjct: 600 MKLDMSKAYDRVEWSFLEKIMRKMGFHPRWVSLIMNCISTVSYSILVNGEPHGFLKPSRG 659

Query: 242 VRQGDPLSPYLFLILTQLVIYVGSIRRQLAIFSG 276
           +RQGDPLSPYLFL+  + + Y+ S  ++     G
Sbjct: 660 IRQGDPLSPYLFLLCAEGLHYLISNAKERGSLQG 688

[Close]

BLAST of Lcy03g000570 vs. NCBI nr
Match: XP_030923330.1 (uncharacterized protein LOC115950239 [Quercus lobata])

HSP 1 Score: 275.0 bits (702), Expect = 1.3e-69
Identity = 124/240 (51.67%), Postives = 177/240 (73.75%), Query Frame = 0


Query: 19   DCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVGEETVN 78
            D V +K+ E ++  L   +T  EV+ ++  + P+KAP  DG +A FYQ FW++VG+  V+
Sbjct: 811  DAVDTKVTEDMREFLSNQFTAEEVQAALFQMGPTKAPGPDGMNALFYQKFWHIVGDSVVS 870

Query: 79   VCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKIISKAIANRFKKVL 138
              L  LN G  L  +N T I LIPKVQ+P  M+EFRPISLCN  YKIISK +ANR K+VL
Sbjct: 871  AVLDFLNNGNMLPEINHTNIVLIPKVQNPERMSEFRPISLCNVIYKIISKVLANRLKQVL 930

Query: 139  DLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFI 198
              IIS +Q+AF+PGRLI+DNV++ ++ +H++ ++KKGK+G VA+K+D+SKAYDRVEW F+
Sbjct: 931  PQIISSTQSAFVPGRLITDNVLVAYETLHTMHARKKGKKGDVALKLDISKAYDRVEWHFL 990

Query: 199  RNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLFLILTQ 258
            ++++ +M F   WI  +M CV + SFS+L+NG P+E  +PSRG+RQGDP+SPYLFL+  +
Sbjct: 991  QSIMEKMGFPAGWIERVMSCVTTPSFSILVNGKPYEMIQPSRGIRQGDPISPYLFLLCAE 1050

[Close]

BLAST of Lcy03g000570 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 272.3 bits (695), Expect = 8.2e-69
Identity = 123/245 (50.20%), Postives = 180/245 (73.47%), Query Frame = 0


Query: 14  IKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVG 73
           I+A+ + + ++I  ++  +L  PYT+ E+EL+++ + P+KA   DG  A FYQ++W+VVG
Sbjct: 567 IEAIINLIPTRITSEVNEQLLAPYTKEEIELAIRQMFPTKALGPDGFPALFYQTYWHVVG 626

Query: 74  EETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKIISKAIANR 133
            +T+  CL  LN G D+   N T IALIPK++ PR +++FRPISLCN SYKIISK+I NR
Sbjct: 627 PKTLEACLNALNNGDDIKKWNSTYIALIPKIKQPRSISDFRPISLCNVSYKIISKSITNR 686

Query: 134 FKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRV 193
            K V+ L+IS +Q+AF+P R ISDNVI+G +C+H+I S K G  G  A+K+D+SKA+DRV
Sbjct: 687 LKNVIGLVISDAQSAFVPSRAISDNVIIGHECLHTINSCKSGLIGMAALKLDLSKAFDRV 746

Query: 194 EWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLF 253
           EW+++  ++ +M F   WI  I++C+ +V FS+ +NGSP   F+PSRG+RQGDPLSPYLF
Sbjct: 747 EWTYLECIMRKMGFNEGWIQAIIQCISTVRFSIHLNGSPGGCFQPSRGIRQGDPLSPYLF 806

Query: 254 LILTQ 259
           L+  +
Sbjct: 807 LLCAE 811

[Close]

BLAST of Lcy03g000570 vs. NCBI nr
Match: XP_042962496.1 (uncharacterized protein LOC122296768 [Carya illinoinensis])

HSP 1 Score: 270.4 bits (690), Expect = 3.1e-68
Identity = 122/240 (50.83%), Postives = 178/240 (74.17%), Query Frame = 0


Query: 19  DCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVVGEETVN 78
           D + +K+  +++N L LP+TR E+  S+  ++P  +P  DG  ASFYQ  W VVGEE  +
Sbjct: 545 DALETKLSNEMENWLLLPFTREEIYTSVTQMNPLGSPGPDGFPASFYQKHWGVVGEEVCS 604

Query: 79  VCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKIISKAIANRFKKVL 138
             LQ+LN G   + +N T I+LIPKV++P  + +FRPISLCN  YKIISK IANRFK +L
Sbjct: 605 YALQVLNHGGSCTDVNDTLISLIPKVKNPIKIPDFRPISLCNVLYKIISKTIANRFKTIL 664

Query: 139 DLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKAYDRVEWSFI 198
             +IS +Q AF+PGRLI+DNV++ ++ +HS+ ++ KGK+G +A+K+DMSKAYDR+EW F+
Sbjct: 665 PKLISLNQTAFVPGRLITDNVLVAYETLHSMSTRMKGKKGCLALKLDMSKAYDRIEWGFV 724

Query: 199 RNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGDPLSPYLFLILTQ 258
             ++S+M F  +WIS + RC+ S+S+S+L+NG P + F PSRG+RQGDPLSPY+F++  +
Sbjct: 725 EAIMSKMGFPFQWISLVQRCLTSISYSILVNGKPQQNFLPSRGLRQGDPLSPYIFIMCAE 784

[Close]

BLAST of Lcy03g000570 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 270.0 bits (689), Expect = 4.1e-68
Identity = 127/252 (50.40%), Postives = 174/252 (69.05%), Query Frame = 0


Query: 7   SNPDEKAIKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQ 66
           SNP +  I      +L K+ +++   L+ P+T  ++  ++  + P+KAP  DG  A+F+Q
Sbjct: 493 SNPSQTQISEALKGLLPKVSQEMNTHLEEPFTPEDITRALSEMCPTKAPGPDGLPAAFFQ 552

Query: 67  SFWNVVGEETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKII 126
             W +VGE     CL ILNE   L  LN T IALIPKV+ PR + EFRPISLCN  Y+I+
Sbjct: 553 KHWQIVGEGLTKTCLHILNEQGTLDSLNHTFIALIPKVEKPRKVMEFRPISLCNVVYRIV 612

Query: 127 SKAIANRFKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDM 186
           +KAIANR K +L+ IISP+Q+AFIP RLI+DNVI+G++C+H IR  K  + G VA+K+D+
Sbjct: 613 AKAIANRLKPILNHIISPNQSAFIPNRLITDNVIIGYECLHKIRLSKGRRNGLVALKLDI 672

Query: 187 SKAYDRVEWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGD 246
           SKAYDRVEW+F+   +S + F  +WIS IM C+ +  FSVLING+P    KP RG+RQG 
Sbjct: 673 SKAYDRVEWNFLEQTMSNLGFSAKWISLIMSCITTTCFSVLINGNPVGLIKPERGLRQGC 732

Query: 247 PLSPYLFLILTQ 259
           PLSPYLF++  +
Sbjct: 733 PLSPYLFILCAE 744

[Close]

BLAST of Lcy03g000570 vs. NCBI nr
Match: XP_035551510.1 (uncharacterized protein LOC118349853 [Juglans regia])

HSP 1 Score: 269.6 bits (688), Expect = 5.3e-68
Identity = 130/249 (52.21%), Postives = 174/249 (69.88%), Query Frame = 0


Query: 7   SNPDEKAIKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQ 66
           + P ++ +      V  K+ E++   L   +TR EVE ++K ++P KAP  DG    FY 
Sbjct: 29  TGPSQEHVFDCIKVVKPKVTEEMNRSLSSAFTRAEVERAIKQMAPLKAPGPDGLGVCFYL 88

Query: 67  SFWNVVGEETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKII 126
             W VVGE   N  L  LN G     +N T IALIPKV++P  +NEFRPISLCN  YKI 
Sbjct: 89  DHWKVVGENVSNAVLSFLNGGELDDLMNYTYIALIPKVKNPTVLNEFRPISLCNVVYKIA 148

Query: 127 SKAIANRFKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDM 186
           SK IANR K +L  IISPSQ+AFIPGR+ISDN+++ ++ +H++++++KGK G +AIK+DM
Sbjct: 149 SKVIANRLKLILGAIISPSQSAFIPGRMISDNIMVAYEALHTMKTRQKGKLGSMAIKLDM 208

Query: 187 SKAYDRVEWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKPSRGVRQGD 246
           SKAYDR+EWSF+  ML ++ F   W   IMRCV SVS+SVL+NG P  +FKPSRG+RQGD
Sbjct: 209 SKAYDRIEWSFLEAMLKQLGFCVSWCRLIMRCVSSVSYSVLVNGKPGRKFKPSRGLRQGD 268

Query: 247 PLSPYLFLI 256
           P+SPYLF++
Sbjct: 269 PISPYLFIL 277

[Close]

BLAST of Lcy03g000570 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 76.6 bits (187), Expect = 6.2e-14
Identity = 62/249 (24.90%), Postives = 112/249 (44.98%), Query Frame = 0


Query: 130 IANRFKKVLDLIISPSQAAFIPGRLISDNVILGFKCIHSIRSKKKGKEGQVAIKVDMSKA 189
           +  R K ++  +I P+QA+FIPGR+ +DN++   + +HS+R +KKG +G + +K+D+ KA
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMR-RKKGVKGWMLLKLDLEKA 60

Query: 190 YDRVEWSFIRNMLSRMVFGNRWISNIMRCVESVSFSVLINGSPHEEFKP-----SRGVRQ 249
           YDR+ W ++ + L    F   W+  I R            G      +P       G R 
Sbjct: 61  YDRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRY 120

Query: 250 GDPLSPYL--FLILTQLVIYVGS---------IRRQLAIFSGTVKRANNNLGEWWDELT- 309
            D  +P+    +   +L+  +G            ++  +F+G  +++   + E WD LT 
Sbjct: 121 DDMAAPFTSNSVACAELLREIGRGSGIPSMPLDLKEEKVFAGAARKSIEAIAE-WDRLTY 180

Query: 310 -----------KKINKEDA-EKIAVTLWTIWTFRNKVTSSKDQASETQIDNEQRRRSIPN 350
                      +  N +DA E +AV        + KV  +    + +Q D ++ +R    
Sbjct: 181 LYERCVRSLSVEATNAKDAHEALAVE-------KEKVAQALADLARSQDDAKEMKRKYDE 240

[Close]

BLAST of Lcy03g000570 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-08
Identity = 33/115 (28.70%), Postives = 54/115 (46.96%), Query Frame = 0


Query: 13  AIKAVTDCVLSKIPEQLKNELDLPYTRNEVELSMKMISPSKAPRMDGTHASFYQSFWNVV 72
           +++ + D    +  + L + L    +  E+  ++  +  +KAP  D   A F+   W VV
Sbjct: 507 SVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVV 566

Query: 73  GEETVNVCLQILNEGADLSPLNKTTIALIPKVQDPRHMNEFRPISLCNTSYKIIS 128
            + T+    +    G  L   N T I LIPKV     ++ FRP+S C   YKII+
Sbjct: 567 KDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621

[Close]

BLAST of Lcy03g000570 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 49.7 bits (117), Expect = 8.1e-06
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 227 LINGSPHEEFKPSRGVRQGDPLSPYLFLILTQLV 261
           +ING+P     PSRG+RQGDPLSPYLF++ T+++
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVL 46

The following BLAST results are available for this feature:

BLAST of Lcy03g000570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14381	2.3e-29	31.34	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]
P11369	5.2e-26	32.40	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
P08548	5.4e-23	27.61	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
O00370	1.2e-22	28.75	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]
P16423	1.5e-09	29.19	Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS...	[more]

BLAST of Lcy03g000570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	4.0e-69	50.20	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A7N2LIH6	5.2e-69	54.74	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2N9J3U0	1.2e-68	49.60	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9FNH6	1.2e-68	49.60	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9HPU0	1.2e-68	48.18	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44029 PE=3 SV=1	[more]

BLAST of Lcy03g000570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030923330.1	1.3e-69	51.67	uncharacterized protein LOC115950239 [Quercus lobata]	[more]
XP_022158377.1	8.2e-69	50.20	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_042962496.1	3.1e-68	50.83	uncharacterized protein LOC122296768 [Carya illinoinensis]	[more]
XP_006491472.1	4.1e-68	50.40	uncharacterized protein LOC102626455 [Citrus sinensis]	[more]
XP_035551510.1	5.3e-68	52.21	uncharacterized protein LOC118349853 [Juglans regia]	[more]

BLAST of Lcy03g000570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20520.1	6.2e-14	24.90	RNA binding;RNA-directed DNA polymerases	[more]
AT1G43760.1	1.7e-08	28.70	DNAse I-like superfamily protein	[more]
ATMG01250.1	8.1e-06	58.82	RNA-directed DNA polymerase (reverse transcriptase)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 101..258 e-value: 3.6E-30 score: 105.1
None	No IPR available	PANTHER	PTHR19446:SF440	SUBFAMILY NOT NAMED	coord: 22..306
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 22..306
None	No IPR available	CDD	cd01650	RT_nLTR_like	coord: 95..257 e-value: 1.53236E-36 score: 132.8
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 14..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000570.1	Lcy03g000570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid