Lcy03g000330 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000330
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr03: 1120047 .. 1120442 (-)
RNA-Seq Expression	Lcy03g000330
Synteny	Lcy03g000330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTCTTGAGTATTTTAATTCCATTTTTGCTTCAAGTAATCCGACTTTGTCTCAACAAGTAAATATTTTGAATGGTATTCAGCCAATTGTTACCCCAGTTATGAATGCTAGACTTCTGGCTCCTTTTTGCAGAGCAGAGATTGAGAGGGCTATCAATCAGATGTTCCCAACGAAAGTTCCAGGGCCAGATGGCTTTCCAGTGCTTTTTTATCAGAAATATTGGGATGTTGTAGGAAATCAAACAGTGGCAGGTTGTTTGGATGTTTTGAATAATAGAAAGTCAATTCGTGGGTGGAACAAAACTCATATTGCGCTTATCCCAAGGTTAGTTCTCCTACTGGGGTGGGTGACTATCGACCTATCAGTTTATGTAATGTGTCTTACAAGATAG

mRNA sequence

ATGGTTTTTCTTGAGTATTTTAATTCCATTTTTGCTTCAAGTAATCCGACTTTGTCTCAACAAGTAAATATTTTGAATGGTATTCAGCCAATTGTTACCCCAGTTATGAATGCTAGACTTCTGGCTCCTTTTTGCAGAGCAGAGATTGAGAGGGCTATCAATCAGATGTTCCCAACGAAAGTTCCAGGGCCAGATGGCTTTCCAGTGCTTTTTTATCAGAAATATTGGGATGTTGTAGGAAATCAAACAGTGGCAGGTTGTTTGGATGTTTTGAATAATAGAAAGTCAATTCGTGGGTGGAACAAAACTCATATTGCGCTTATCCCAAGGTTAGTTCTCCTACTGGGGTGGGTGACTATCGACCTATCAGTTTATGTAATGTGTCTTACAAGATAG

Coding sequence (CDS)

ATGGTTTTTCTTGAGTATTTTAATTCCATTTTTGCTTCAAGTAATCCGACTTTGTCTCAACAAGTAAATATTTTGAATGGTATTCAGCCAATTGTTACCCCAGTTATGAATGCTAGACTTCTGGCTCCTTTTTGCAGAGCAGAGATTGAGAGGGCTATCAATCAGATGTTCCCAACGAAAGTTCCAGGGCCAGATGGCTTTCCAGTGCTTTTTTATCAGAAATATTGGGATGTTGTAGGAAATCAAACAGTGGCAGGTTGTTTGGATGTTTTGAATAATAGAAAGTCAATTCGTGGGTGGAACAAAACTCATATTGCGCTTATCCCAAGGTTAGTTCTCCTACTGGGGTGGGTGACTATCGACCTATCAGTTTATGTAATGTGTCTTACAAGATAG

Protein sequence

MVFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKVPGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRLVLLLGWVTIDLSVYVMCLTR

Homology

[Close]

BLAST of Lcy03g000330 vs. ExPASy TrEMBL
Match: M5W5F3 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026368mg PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.6e-23
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKV 61
           +F +YF ++F+SS     Q   ILN ++P++T  MNA+LL  F R E+E  + QMFPTK 
Sbjct: 91  LFCDYFKTLFSSSGG--QQMERILNEVRPVITSAMNAQLLQAFTREELEHTLFQMFPTKA 150

Query: 62  PGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           PG DG P LF+QKYW +VG++    CL +LN   S+R +N T IALIP++
Sbjct: 151 PGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKV 198

[Close]

BLAST of Lcy03g000330 vs. ExPASy TrEMBL
Match: A0A251NPF0 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G123900 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.6e-23
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKV 61
           +F +YF ++F+SS     Q   ILN ++P++T  MNA+LL  F R E+E  + QMFPTK 
Sbjct: 54  LFCDYFKTLFSSSGG--QQMERILNEVRPVITSAMNAQLLQAFTREELEHTLFQMFPTKA 113

Query: 62  PGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           PG DG P LF+QKYW +VG++    CL +LN   S+R +N T IALIP++
Sbjct: 114 PGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKV 161

[Close]

BLAST of Lcy03g000330 vs. ExPASy TrEMBL
Match: M5WJW2 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G011200 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKV 61
           +F +YF ++F+SS     Q   ILN ++P++T  MN RLL  F R E+E  + QMFPTK 
Sbjct: 341 LFCDYFKTLFSSSGG--QQMERILNEVRPVITSAMNDRLLQAFTREELEHTLFQMFPTKA 400

Query: 62  PGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           PG DG P LF+QKYW +VG++    CL +LN   S+R +N T IALIP++
Sbjct: 401 PGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKV 448

[Close]

BLAST of Lcy03g000330 vs. ExPASy TrEMBL
Match: A0A5E4FZN9 (PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKV 61
           +F +YF ++F+S+     Q   ILN ++P++T  MN RLL  F R E+E  + QMFPTK 
Sbjct: 320 LFCDYFKTLFSSTGG--QQMERILNEVRPVITSAMNDRLLQAFTREELEHTLFQMFPTKA 379

Query: 62  PGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           PG DG P LF+QKYW +VG++    CL +LN   S+R +N T IALIP++
Sbjct: 380 PGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKV 427

[Close]

BLAST of Lcy03g000330 vs. ExPASy TrEMBL
Match: M5Y0R3 (CCHC-type domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015219mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVN-ILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTK 61
           +F +YF ++F+SS+    QQ+  ILN ++P++T  MN RLL  F R E+E  + QMFP K
Sbjct: 605 LFCDYFKTLFSSSS---GQQMEWILNEVRPVITSAMNDRLLQAFTRRELEHTLFQMFPMK 664

Query: 62  VPGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
            PG DG P LF+QKYW +VG++    CL +LN   S+R +N T IALIP++
Sbjct: 665 APGHDGMPALFFQKYWHIVGDKVANKCLQILNGEGSVREFNHTLIALIPKV 712

[Close]

BLAST of Lcy03g000330 vs. NCBI nr
Match: ONI01138.1 (hypothetical protein PRUPE_6G123900 [Prunus persica])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKV 61
           +F +YF ++F+SS     Q   ILN ++P++T  MNA+LL  F R E+E  + QMFPTK 
Sbjct: 54  LFCDYFKTLFSSSGG--QQMERILNEVRPVITSAMNAQLLQAFTREELEHTLFQMFPTKA 113

Query: 62  PGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           PG DG P LF+QKYW +VG++    CL +LN   S+R +N T IALIP++
Sbjct: 114 PGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKV 161

[Close]

BLAST of Lcy03g000330 vs. NCBI nr
Match: ONI09819.1 (hypothetical protein PRUPE_4G011200 [Prunus persica])

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-22
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKV 61
           +F +YF ++F+SS     Q   ILN ++P++T  MN RLL  F R E+E  + QMFPTK 
Sbjct: 341 LFCDYFKTLFSSSGG--QQMERILNEVRPVITSAMNDRLLQAFTREELEHTLFQMFPTKA 400

Query: 62  PGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           PG DG P LF+QKYW +VG++    CL +LN   S+R +N T IALIP++
Sbjct: 401 PGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKV 448

[Close]

BLAST of Lcy03g000330 vs. NCBI nr
Match: VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis])

HSP 1 Score: 115.2 bits (287), Expect = 4.4e-22
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKV 61
           +F +YF ++F+S+     Q   ILN ++P++T  MN RLL  F R E+E  + QMFPTK 
Sbjct: 320 LFCDYFKTLFSSTGG--QQMERILNEVRPVITSAMNDRLLQAFTREELEHTLFQMFPTKA 379

Query: 62  PGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           PG DG P LF+QKYW +VG++    CL +LN   S+R +N T IALIP++
Sbjct: 380 PGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKV 427

[Close]

BLAST of Lcy03g000330 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-20
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 24  ILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKVPGPDGFPVLFYQKYWDVVGNQT 83
           I+N I   +T  +N +LLAP+ + EIE AI QMFPTK  GPDGFP LFYQ YW VVG +T
Sbjct: 570 IINLIPTRITSEVNEQLLAPYTKEEIELAIRQMFPTKALGPDGFPALFYQTYWHVVGPKT 629

Query: 84  VAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           +  CL+ LNN   I+ WN T+IALIP++
Sbjct: 630 LEACLNALNNGDDIKKWNSTYIALIPKI 657

[Close]

BLAST of Lcy03g000330 vs. NCBI nr
Match: XP_023881891.1 (uncharacterized protein LOC111994244 [Quercus suber])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 54/110 (49.09%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 2   VFLEYFNSIFASSNPTLSQQVNILNGIQPIVTPVMNARLLAPFCRAEIERAINQMFPTKV 61
           V + YF +I++SS PT   +V  L+ I   VT  MN  L+  F R EIE A+NQM PTK 
Sbjct: 228 VAVSYFQTIYSSSVPTRISEV--LDAIPTTVTEEMNHSLIQEFTREEIETALNQMHPTKA 287

Query: 62  PGPDGFPVLFYQKYWDVVGNQTVAGCLDVLNNRKSIRGWNKTHIALIPRL 112
           PGPDG   +F+QKYW++VGN  V   LDVLN+  S+   NKT+I L+P++
Sbjct: 288 PGPDGMSAIFFQKYWNIVGNDIVCMVLDVLNSNMSMVEINKTNITLVPKI 335

The following BLAST results are available for this feature:

BLAST of Lcy03g000330 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g000330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5W5F3	5.6e-23	48.18	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A251NPF0	5.6e-23	48.18	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]
M5WJW2	9.5e-23	48.18	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]
A0A5E4FZN9	2.1e-22	47.27	PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1	[more]
M5Y0R3	1.1e-21	47.75	CCHC-type domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUP...	[more]

BLAST of Lcy03g000330 vs. NCBI nr


Match Name	E-value	Identity	Description
ONI01138.1	1.2e-22	48.18	hypothetical protein PRUPE_6G123900 [Prunus persica]	[more]
ONI09819.1	2.0e-22	48.18	hypothetical protein PRUPE_4G011200 [Prunus persica]	[more]
VVA32947.1	4.4e-22	47.27	PREDICTED: retrotransposon [Prunus dulcis]	[more]
XP_022158377.1	1.1e-20	56.82	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_023881891.1	3.1e-20	49.09	uncharacterized protein LOC111994244 [Quercus suber]	[more]

BLAST of Lcy03g000330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 5..111
None	No IPR available	PANTHER	PTHR19446:SF440	SUBFAMILY NOT NAMED	coord: 5..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000330.1	Lcy03g000330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding