Lcy03g000320 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g000320
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase
LocationChr03: 1119301 .. 1119621 (-)
RNA-Seq ExpressionLcy03g000320
SyntenyLcy03g000320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGCTCTCATATCAAGTGTGCAGATTGGTTCTTTTTGTCCTGCTATATCACACTTATTTTTTTGTTGATGATAGTTTGGTTTTCTTTAAAGCCAATATGTTAGAAGGATGGCATATTAAACATATTTTAAAAGAATATGAGGTTGCTTCAGGTAAATGTGTAAACTTCCATAAGTCAGCTTTGTTTATTTCGTCGAATGTTCCTCCGGATAGTAAAGATTTGTTAGGAAGTATGTTGGGCGTGCCCATTGTTGATGATCTTGGCTACTATTTGGGTTTACCTTCTCAGTTTTCTCGCTCAGATCTGTTTTCGTAG

mRNA sequence

ATGATCAAGCTCTCATATCAAGTGTGCAGATTGGTTCTTTTTGTCCTGCTATATCACACTTATTTTTTTGTTGATGATAGTTTGGTTTTCTTTAAAGCCAATATGTTAGAAGGATGGCATATTAAACATATTTTAAAAGAATATGAGGTTGCTTCAGGTAAATGTGTAAACTTCCATAAGTCAGCTTTGTTTATTTCGTCGAATGTTCCTCCGGATAGTAAAGATTTGTTAGGAAGTATGTTGGGCGTGCCCATTGTTGATGATCTTGGCTACTATTTGGGTTTACCTTCTCAGTTTTCTCGCTCAGATCTGTTTTCGTAG

Coding sequence (CDS)

ATGATCAAGCTCTCATATCAAGTGTGCAGATTGGTTCTTTTTGTCCTGCTATATCACACTTATTTTTTTGTTGATGATAGTTTGGTTTTCTTTAAAGCCAATATGTTAGAAGGATGGCATATTAAACATATTTTAAAAGAATATGAGGTTGCTTCAGGTAAATGTGTAAACTTCCATAAGTCAGCTTTGTTTATTTCGTCGAATGTTCCTCCGGATAGTAAAGATTTGTTAGGAAGTATGTTGGGCGTGCCCATTGTTGATGATCTTGGCTACTATTTGGGTTTACCTTCTCAGTTTTCTCGCTCAGATCTGTTTTCGTAG

Protein sequence

MIKLSYQVCRLVLFVLLYHTYFFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSMLGVPIVDDLGYYLGLPSQFSRSDLFS
Homology
BLAST of Lcy03g000320 vs. ExPASy TrEMBL
Match: A0A803QNR5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.3e-11
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 23   FVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSMLG 82
            F DDS ++ KA MLE   +K IL ++E ASG+ VNF KS++F S+N   D++D + S+LG
Sbjct: 1015 FADDSYLYCKATMLEASRMKEILHKFEAASGQKVNFSKSSIFYSTNTASDTRDNISSLLG 1074

Query: 83   VPIVDDLGYYLGLPSQFSRS 103
            + I  +   YLGLPS  SR+
Sbjct: 1075 MVIAGEGSLYLGLPSTLSRN 1094

BLAST of Lcy03g000320 vs. ExPASy TrEMBL
Match: A0A7J8NFE4 (Uncharacterized protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_023901 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.0e-11
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 23  FVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSMLG 82
           FVDD ++F +A       +KHILK+YEV+SG+CVNF KS++F S+N     ++++  +LG
Sbjct: 27  FVDDCILFAEATERGARSLKHILKDYEVSSGQCVNFDKSSVFFSTNTKDGEREVVSQILG 86

Query: 83  VPIVDDLGYYLGLPSQFSR 102
           V   +DL  YLGLPS   +
Sbjct: 87  VRRANDLERYLGLPSMVGK 105

BLAST of Lcy03g000320 vs. ExPASy TrEMBL
Match: A0A803QQH6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.8e-11
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 22  FFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSML 81
           FF DDSL+F  A++     I++IL +Y  ASG+ VNF KSAL+ S N  P+ +  + S+L
Sbjct: 545 FFADDSLLFSSASIEATTSIQNILHDYSRASGQLVNFAKSALYFSPNTAPELQHTIASLL 604

Query: 82  GVPIVDDLGYYLGLPSQFSRS 103
           G+PI + +  YLGLP  F RS
Sbjct: 605 GIPIRETMEKYLGLPQTFGRS 625

BLAST of Lcy03g000320 vs. ExPASy TrEMBL
Match: A0A803PYQ3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.8e-11
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 22   FFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSML 81
            FF DDSL+F  A+      IK IL  Y +ASG+ VNF KSALF S N   + +  + ++L
Sbjct: 1397 FFADDSLIFSSASPAAATSIKSILTNYSLASGQLVNFSKSALFFSPNTTEEIQTNVAAIL 1456

Query: 82   GVPIVDDLGYYLGLPSQFSRS 103
            G+P+ D    YLGLP  F RS
Sbjct: 1457 GIPVSDTFDKYLGLPQTFGRS 1477

BLAST of Lcy03g000320 vs. ExPASy TrEMBL
Match: A0A803QD75 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 22  FFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSML 81
           FF DDSL+F  A++     I++IL +Y  ASG+ VNF+K AL+ S N  P+ +  + S+L
Sbjct: 535 FFTDDSLLFSSASIEAATSIQNILHDYSRASGQLVNFNKLALYFSPNTAPELQHAIASLL 594

Query: 82  GVPIVDDLGYYLGLPSQFSRS 103
           G+P+ + +  YLGLP  F RS
Sbjct: 595 GIPVRETMEKYLGLPQTFGRS 615

BLAST of Lcy03g000320 vs. NCBI nr
Match: XP_019184158.1 (PREDICTED: uncharacterized protein LOC109179042 [Ipomoea nil])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 22  FFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSML 81
           FF DDSL+FFKAN+ E   +K  L  YE  SG+ VNF+KS++  S N   + KDLL   L
Sbjct: 164 FFADDSLLFFKANLQETMEVKRCLGVYEAYSGQAVNFNKSSISFSRNTRNEVKDLLAGAL 223

Query: 82  GVPIVDDLGYYLGLPSQFSRS 103
           GV   DD G YLGLPS   R+
Sbjct: 224 GVAQADDFGKYLGLPSVIGRN 244

BLAST of Lcy03g000320 vs. NCBI nr
Match: XP_028960669.1 (uncharacterized protein LOC103452416 [Malus domestica])

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 22  FFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSML 81
           FF DD+L+  + N+  G +I HIL +Y +ASG+ +N HKS+++   N P   +  LGS+L
Sbjct: 612 FFADDTLICLQVNLRNGENIMHILNKYCLASGQMMNSHKSSVYFGRNTPDQVRSQLGSLL 671

Query: 82  GVPIVDDLGYYLGLPSQFSRS 103
           G+P+V D G YLGLP+ + RS
Sbjct: 672 GMPVVSDPGVYLGLPAIWGRS 692

BLAST of Lcy03g000320 vs. NCBI nr
Match: XP_037495993.1 (uncharacterized protein LOC105645525 [Jatropha curcas])

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 22   FFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSML 81
            FF DDSLVF KA++ E   +KHIL  YE  SG+ +NF+KS++  S+N P  S+  + S+L
Sbjct: 966  FFADDSLVFLKASVQESQSLKHILAMYEAESGQQINFNKSSITFSTNTPRHSRHQICSLL 1025

Query: 82   GVPIVDDLGYYLGLPSQFSRS 103
             VP  D LG YLGLPS   R+
Sbjct: 1026 QVPEKDTLGSYLGLPSHMGRN 1046

BLAST of Lcy03g000320 vs. NCBI nr
Match: XP_019161424.1 (PREDICTED: uncharacterized protein LOC109158061 [Ipomoea nil])

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-12
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 22  FFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSML 81
           FF DDSL+FFKAN+ E   +K  L EYE   G+ VN+HKS++  S N   D +D +  +L
Sbjct: 141 FFADDSLLFFKANVAEAGEVKRCLIEYEALPGQAVNYHKSSVCFSKNTTEDCRDQVAQLL 200

Query: 82  GVPIVDDLGYYLGLPSQFSR 102
           GVP   D   YLGLPS   R
Sbjct: 201 GVPKATDFSKYLGLPSFIRR 220

BLAST of Lcy03g000320 vs. NCBI nr
Match: XP_019168841.1 (PREDICTED: uncharacterized protein LOC109164747 [Ipomoea nil])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 22  FFVDDSLVFFKANMLEGWHIKHILKEYEVASGKCVNFHKSALFISSNVPPDSKDLLGSML 81
           FFVDDSL+FFKAN+ E   +K  L  YE  SG+ VNFHKS++  S N   + +DL+   L
Sbjct: 104 FFVDDSLLFFKANLQETQEVKRCLSVYETFSGQAVNFHKSSVSFSRNTQEEMRDLVSGTL 163

Query: 82  GVPIVDDLGYYLGLPSQFSRS 103
            V   +D G YLGLPS   R+
Sbjct: 164 TVAQAEDFGKYLGLPSVIGRN 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803QNR52.3e-1147.50Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J8NFE44.0e-1145.57Uncharacterized protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_023901... [more]
A0A803QQH66.8e-1146.91Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PYQ38.8e-1146.91Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QD751.2e-1044.44Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_019184158.11.5e-1251.85PREDICTED: uncharacterized protein LOC109179042 [Ipomoea nil][more]
XP_028960669.12.5e-1245.68uncharacterized protein LOC103452416 [Malus domestica][more]
XP_037495993.12.5e-1250.62uncharacterized protein LOC105645525 [Jatropha curcas][more]
XP_019161424.13.3e-1248.75PREDICTED: uncharacterized protein LOC109158061 [Ipomoea nil][more]
XP_019168841.14.3e-1249.38PREDICTED: uncharacterized protein LOC109164747 [Ipomoea nil][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 21..102
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 21..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g000320.1Lcy03g000320.1mRNA