Lcy02g018320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g018320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
Location	Chr02: 45450421 .. 45450756 (-)
RNA-Seq Expression	Lcy02g018320
Synteny	Lcy02g018320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATCTTTAAAAGTGGTTGCTTTGTGTTCATTGTGTTGATGTTCACCATTTTGTTAGCTGGTCCACAGCTGATGGAGGCAGCCAGGGTTATGAAAGGAGAGAAATGGATGGAGGACAAGGAAGATAATAGGCCTTTTGTGTTGCCTATTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCTGGCCAAAGCAACGGTCGATGCACCCTCCAGACGATGAATGTTGCAGGTGGTCGTTTCGTTCACGCGCCGCCTGCTATCCCCGAGTCGGCGCTCGTTGCCTCGGCTGCTCAAAGCTCTTGA

mRNA sequence

ATGGGCATCTTTAAAAGTGGTTGCTTTGTGTTCATTGTGTTGATGTTCACCATTTTGTTAGCTGGTCCACAGCTGATGGAGGCAGCCAGGGTTATGAAAGGAGAGAAATGGATGGAGGACAAGGAAGATAATAGGCCTTTTGTGTTGCCTATTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCTGGCCAAAGCAACGGTCGATGCACCCTCCAGACGATGAATGTTGCAGGTGGTCGTTTCGTTCACGCGCCGCCTGCTATCCCCGAGTCGGCGCTCGTTGCCTCGGCTGCTCAAAGCTCTTGA

Coding sequence (CDS)

ATGGGCATCTTTAAAAGTGGTTGCTTTGTGTTCATTGTGTTGATGTTCACCATTTTGTTAGCTGGTCCACAGCTGATGGAGGCAGCCAGGGTTATGAAAGGAGAGAAATGGATGGAGGACAAGGAAGATAATAGGCCTTTTGTGTTGCCTATTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCTGGCCAAAGCAACGGTCGATGCACCCTCCAGACGATGAATGTTGCAGGTGGTCGTTTCGTTCACGCGCCGCCTGCTATCCCCGAGTCGGCGCTCGTTGCCTCGGCTGCTCAAAGCTCTTGA

Protein sequence

MGIFKSGCFVFIVLMFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGRFVHAPPAIPESALVASAAQSS

Homology

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BLAST of Lcy02g018320 vs. ExPASy TrEMBL
Match: A0A6J1K3A7 (uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 83/113 (73.45%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MGIFKSGCFVFIVLMFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPV 60
           MG+ K    VF VL+FTILL  P  MEAARVM GEKWM+ K+D   FVLP IQVLQRAPV
Sbjct: 1   MGMSKRVSLVFFVLLFTILLPNP--MEAARVMSGEKWMKAKQD-MAFVLP-IQVLQRAPV 60

Query: 61  PPSGRNPCTNIPGQSNGRCTLQTMNVAG--GRFVHAPPAIPESALVASAAQSS 112
           PPSGRNPC+ IPGQSNGRCTLQTMNVAG  GRFV APPAI + A +ASAAQSS
Sbjct: 61  PPSGRNPCSTIPGQSNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

[Close]

BLAST of Lcy02g018320 vs. ExPASy TrEMBL
Match: A0A0A0LCX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-30
Identity = 77/103 (74.76%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 12  IVLMFTILLAGPQLMEAARVMKGEKWM-EDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTN 71
           ++L F IL+A  Q+M  ARVMK EKWM E+K D+  FVLPIIQVLQRAPVPPSGRNPCT 
Sbjct: 8   VLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTG 67

Query: 72  IPGQSNGRCTLQTMNVAGGRFVHA-PPAIPESAL-VASAAQSS 112
           IPGQSNGRCTLQTMNVAG  FVHA PP IP+SAL V S AQSS
Sbjct: 68  IPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

[Close]

BLAST of Lcy02g018320 vs. ExPASy TrEMBL
Match: A0A6J1ET04 (uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC111437447 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-30
Identity = 82/113 (72.57%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MGIFKSGCFVFIVLMFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPV 60
           MG+ K    VF VLM TILL  P  MEAARVM G KWM+ K+D   FVLP IQVLQRAPV
Sbjct: 1   MGMSKRVSLVFFVLMLTILLPNP--MEAARVMSGHKWMKAKQD-IAFVLP-IQVLQRAPV 60

Query: 61  PPSGRNPCTNIPGQSNGRCTLQTMNVAG--GRFVHAPPAIPESALVASAAQSS 112
           PPSGRNPC+ IPGQSNGRCTLQTMNVAG  GRFV APPAI + A +ASAAQSS
Sbjct: 61  PPSGRNPCSTIPGQSNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

[Close]

BLAST of Lcy02g018320 vs. ExPASy TrEMBL
Match: A0A5C7I2P2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010777 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 10  VFIVLMFTILLAG--PQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNP 69
           V +++  T+L+A      + A R ++G++W  +KEDNR       Q LQ+ P+PPSGRNP
Sbjct: 13  VVLIIFMTLLMASHDQHFVAATRPLEGDQW-TNKEDNR----LAFQSLQQGPLPPSGRNP 72

Query: 70  CTNIPGQSNGRCTLQTMNVAGGRFVHAPPAIPESAL---VASAAQS 111
           C+NIPGQ +G CTL   N AGGR    PPA P   +   VAS A+S
Sbjct: 73  CSNIPGQGSGVCTLNGKNFAGGRVALEPPAFPSFVMDIGVASIARS 113

[Close]

BLAST of Lcy02g018320 vs. ExPASy TrEMBL
Match: B9I5L3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G043600 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.4e-12
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 5   KSGCFVFIVLMFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSG 64
           ++ C   ++ +  +L +  Q + AAR ++GE+W E    N       IQ LQR PVPPSG
Sbjct: 6   RNQCLTVMIFVTIVLGSCSQQVLAARPLEGERWSEKIVGN-------IQSLQRGPVPPSG 65

Query: 65  RNPCTNIPGQSNGRCTLQTMNVAGGRFVHAPPAIPESALVASAAQSS 112
            +PCT+IPG+ +G+C+L  MN AG     APPA P++ +   AA S+
Sbjct: 66  GSPCTHIPGRGSGKCSLGEMNFAGHTVALAPPAFPDAIMNFGAAAST 105

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BLAST of Lcy02g018320 vs. NCBI nr
Match: XP_022995941.1 (uncharacterized protein LOC111491306 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-31
Identity = 83/113 (73.45%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MGIFKSGCFVFIVLMFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPV 60
           MG+ K    VF VL+FTILL  P  MEAARVM GEKWM+ K+D   FVLP IQVLQRAPV
Sbjct: 1   MGMSKRVSLVFFVLLFTILLPNP--MEAARVMSGEKWMKAKQD-MAFVLP-IQVLQRAPV 60

Query: 61  PPSGRNPCTNIPGQSNGRCTLQTMNVAG--GRFVHAPPAIPESALVASAAQSS 112
           PPSGRNPC+ IPGQSNGRCTLQTMNVAG  GRFV APPAI + A +ASAAQSS
Sbjct: 61  PPSGRNPCSTIPGQSNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

[Close]

BLAST of Lcy02g018320 vs. NCBI nr
Match: XP_022931191.1 (uncharacterized protein LOC111437447 [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 8.3e-30
Identity = 82/113 (72.57%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MGIFKSGCFVFIVLMFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPV 60
           MG+ K    VF VLM TILL  P  MEAARVM G KWM+ K+D   FVLP IQVLQRAPV
Sbjct: 1   MGMSKRVSLVFFVLMLTILLPNP--MEAARVMSGHKWMKAKQD-IAFVLP-IQVLQRAPV 60

Query: 61  PPSGRNPCTNIPGQSNGRCTLQTMNVAG--GRFVHAPPAIPESALVASAAQSS 112
           PPSGRNPC+ IPGQSNGRCTLQTMNVAG  GRFV APPAI + A +ASAAQSS
Sbjct: 61  PPSGRNPCSTIPGQSNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

[Close]

BLAST of Lcy02g018320 vs. NCBI nr
Match: KAG6606390.1 (hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 15  MFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 74
           MFTILL  P  MEAARVM GEKWM+ K+D   FVLP IQVLQRAPVPPSGRNPC+ IPGQ
Sbjct: 1   MFTILLPNP--MEAARVMSGEKWMKAKQD-IAFVLP-IQVLQRAPVPPSGRNPCSTIPGQ 60

Query: 75  SNGRCTLQTMNVAGG--RFVHAPPAIPESALVASAAQSS 112
           SNGRCTLQTMNVAGG  RFV APPAI + A +ASAAQSS
Sbjct: 61  SNGRCTLQTMNVAGGPARFVQAPPAIHDPAPIASAAQSS 95

[Close]

BLAST of Lcy02g018320 vs. NCBI nr
Match: TXG63783.1 (hypothetical protein EZV62_010777 [Acer yangbiense])

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-12
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 10  VFIVLMFTILLAG--PQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNP 69
           V +++  T+L+A      + A R ++G++W  +KEDNR       Q LQ+ P+PPSGRNP
Sbjct: 13  VVLIIFMTLLMASHDQHFVAATRPLEGDQW-TNKEDNR----LAFQSLQQGPLPPSGRNP 72

Query: 70  CTNIPGQSNGRCTLQTMNVAGGRFVHAPPAIPESAL---VASAAQS 111
           C+NIPGQ +G CTL   N AGGR    PPA P   +   VAS A+S
Sbjct: 73  CSNIPGQGSGVCTLNGKNFAGGRVALEPPAFPSFVMDIGVASIARS 113

[Close]

BLAST of Lcy02g018320 vs. NCBI nr
Match: XP_002319090.1 (uncharacterized protein LOC7487687 [Populus trichocarpa] >PNT06657.1 hypothetical protein POPTR_013G043600 [Populus trichocarpa])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 5   KSGCFVFIVLMFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSG 64
           ++ C   ++ +  +L +  Q + AAR ++GE+W E    N       IQ LQR PVPPSG
Sbjct: 6   RNQCLTVMIFVTIVLGSCSQQVLAARPLEGERWSEKIVGN-------IQSLQRGPVPPSG 65

Query: 65  RNPCTNIPGQSNGRCTLQTMNVAGGRFVHAPPAIPESALVASAAQSS 112
            +PCT+IPG+ +G+C+L  MN AG     APPA P++ +   AA S+
Sbjct: 66  GSPCTHIPGRGSGKCSLGEMNFAGHTVALAPPAFPDAIMNFGAAAST 105

The following BLAST results are available for this feature:

BLAST of Lcy02g018320 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g018320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3A7	2.8e-31	73.45	uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306...	[more]
A0A0A0LCX8	4.0e-30	74.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1	[more]
A0A6J1ET04	4.0e-30	72.57	uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC1114374...	[more]
A0A5C7I2P2	1.3e-12	45.28	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010777 PE=4 SV=1	[more]
B9I5L3	6.4e-12	40.19	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G043600 PE=4 ...	[more]

BLAST of Lcy02g018320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995941.1	5.7e-31	73.45	uncharacterized protein LOC111491306 [Cucurbita maxima]	[more]
XP_022931191.1	8.3e-30	72.57	uncharacterized protein LOC111437447 [Cucurbita moschata]	[more]
KAG6606390.1	2.0e-28	77.78	hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TXG63783.1	2.7e-12	45.28	hypothetical protein EZV62_010777 [Acer yangbiense]	[more]
XP_002319090.1	1.3e-11	40.19	uncharacterized protein LOC7487687 [Populus trichocarpa] >PNT06657.1 hypothetica...	[more]

BLAST of Lcy02g018320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592:SF5	TRANSMEMBRANE PROTEIN	coord: 6..110
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 6..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g018320.1	Lcy02g018320.1	mRNA