Lcy02g016850 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g016850
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr02: 43981115 .. 43982441 (+)
RNA-Seq ExpressionLcy02g016850
SyntenyLcy02g016850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGCGCTCGACAAACGAAGATGGTTGGGCGCTCGACGAAGGAAGACGGCTGCGGCGCTCGACGAATGAAGAAGGCTGCGGCGCTCGACGAACGAAGAAGGCTGCTCGACGGCGTAGATCGGGAGTACAGAAACAAACCCAAGCTTCCAACGAGGTCTCGCCGGCGTTTTCTGCGAAGGAAATCGCGACTGGGGTTGAAGAAAAGGGACGGAAATCGCTGGCATTTCATGAAATGGTTGTTCGTCGTTGGCTACCGTGCTCGTTTCAGATCTGGATTCAAAGGGGATTTGTTCCTGAAATGATTTCCCCTTCTTCTTATTAAGAATGAAAGAAGAAAGAGATGGGAGGAAGAGGGAAGAAAGAGATGGGAGGAAGAGGGAAGAAGAAGATGAAGAAAAAGGGGAGGAGAGGGAAGAAGAAGAAAAGAGAAAAAAAATGAGAGAAAAAGGGGTTCGGCGGCGGTCCGGCGACGACGACGGTGGCGGTCCGGTGACGGCGACGGAGCGGCATCTGTCCGGTAGCAGCTGGTAAGAAGAAGAAGGAAGAAGAAAGGGAGAAAGAGAAGAAAGAGAGGATGAATAAAAAATATATTTTTTTTATTAATTTAATATTATTTTATTATAAAAATTAAAAAATATATATTTTTAATTAAAAAGTAGGTGCCACGTCAGCATTTCGTTAATATTTAACAGAAAAATGGATGGAAGGACTAAAATGAAACGAAATCCAAACCTCATGAACTAAATTGTCGAGTTTGAAAACTCAGGAACCAAAATGAAACTTAACTCAAACCTCAGGACCAAAAGTGTATTTTTCCCTATTATTTTTCACCAAAACCTTACCATCAATTTAGAGAAATTAGTAACTTCTCCTACATGTGCCCTTTAGAAACCACAAAGCTGTAAAAGTCAAAACAACCATTGCAATAAAGGGATATATGCCATTATCCAAAACTATGAGTGTGACCAAGGCCAAAATAATTACCAACATGACTTGAAAACAAAGCAATCCCTTTGAAACCCTTTTTATTTACAAACCCTCCACACATCAAACAAAACAAACCCAAAAATTCAATGGCCAAAATCTCTTTCATTTTCATCTTCTTCATTTTGGCTTTCATTTCAGTTGCAGCCATGGCAGAAGCCAAAGATCAAAAAGATGTTGCAGCAGTGAGTTTTCATGATCAACAACAACAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAACCATGGAAGCTTTAGAAGCCCTAACAAACAACTTCTCAATAATCCTCACCAATTTGAGCCATTTGATCACTTTCAAGACCCCATTGATCTCTAA

mRNA sequence

ATGGCTGGGCGCTCGACAAACGAAGATGGTTGGGCGCTCGACGAAGGAAGACGGCTGCGGCGCTCGACGAATGAAGAAGGCTGCGGCGCTCGACGAACGAAGAAGGCTGCTCGACGGCGTAGATCGGGAGTACAGAAACAAACCCAAGCTTCCAACGAGGTCTCGCCGGCGTTTTCTGCGAAGGAAATCGCGACTGGGGTTGAAGAAAAGGGACGGAAATCGCTGGCATTTCATGAAATGGTTGTTCGTCTTGCAGCCATGGCAGAAGCCAAAGATCAAAAAGATGTTGCAGCAGTGAGTTTTCATGATCAACAACAACAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAACCATGGAAGCTTTAGAAGCCCTAACAAACAACTTCTCAATAATCCTCACCAATTTGAGCCATTTGATCACTTTCAAGACCCCATTGATCTCTAA

Coding sequence (CDS)

ATGGCTGGGCGCTCGACAAACGAAGATGGTTGGGCGCTCGACGAAGGAAGACGGCTGCGGCGCTCGACGAATGAAGAAGGCTGCGGCGCTCGACGAACGAAGAAGGCTGCTCGACGGCGTAGATCGGGAGTACAGAAACAAACCCAAGCTTCCAACGAGGTCTCGCCGGCGTTTTCTGCGAAGGAAATCGCGACTGGGGTTGAAGAAAAGGGACGGAAATCGCTGGCATTTCATGAAATGGTTGTTCGTCTTGCAGCCATGGCAGAAGCCAAAGATCAAAAAGATGTTGCAGCAGTGAGTTTTCATGATCAACAACAACAACAGTTCATGTGGGGAAGGAAGGAGAGAGTGAACCATGGAAGCTTTAGAAGCCCTAACAAACAACTTCTCAATAATCCTCACCAATTTGAGCCATTTGATCACTTTCAAGACCCCATTGATCTCTAA

Protein sequence

MAGRSTNEDGWALDEGRRLRRSTNEEGCGARRTKKAARRRRSGVQKQTQASNEVSPAFSAKEIATGVEEKGRKSLAFHEMVVRLAAMAEAKDQKDVAAVSFHDQQQQQFMWGRKERVNHGSFRSPNKQLLNNPHQFEPFDHFQDPIDL
Homology
[Close]
BLAST of Lcy02g016850 vs. ExPASy TrEMBL
Match: A0A0A0LH37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 0 

Query: 75  LAFHEMVVRLAAMAEAKDQKDVAAVSFHDQQQQQFMWGRKERVNHGSFRSPNKQLLNNPH 134
           LAF  + V  AA+ +    KDV A  FH     +F+WGRKER+NHGSFR P+K LLN+PH
Sbjct: 12  LAFISVTV-AAAIGDMSKGKDV-ATKFH--YHDEFIWGRKERINHGSFRGPDKYLLNDPH 71

Query: 135 QFEPFDHFQDPI 147
            F PFD FQ PI
Sbjct: 72  PFHPFDQFQGPI 79

[Close]
BLAST of Lcy02g016850 vs. NCBI nr
Match: KGN60344.1 (hypothetical protein Csa_002159 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-09
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 0 

Query: 75  LAFHEMVVRLAAMAEAKDQKDVAAVSFHDQQQQQFMWGRKERVNHGSFRSPNKQLLNNPH 134
           LAF  + V  AA+ +    KDV A  FH     +F+WGRKER+NHGSFR P+K LLN+PH
Sbjct: 12  LAFISVTV-AAAIGDMSKGKDV-ATKFH--YHDEFIWGRKERINHGSFRGPDKYLLNDPH 71

Query: 135 QFEPFDHFQDPI 147
            F PFD FQ PI
Sbjct: 72  PFHPFDQFQGPI 79

The following BLAST results are available for this feature:
BLAST of Lcy02g016850 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g016850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH371.0e-0955.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1[more]
BLAST of Lcy02g016850 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60344.12.2e-0955.56hypothetical protein Csa_002159 [Cucumis sativus][more]
BLAST of Lcy02g016850 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g016850.1Lcy02g016850.1mRNA