Lcy02g016110 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g016110
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	vacuolar protein sorting-associated protein 55 homolog
Location	Chr02: 43127315 .. 43128348 (-)
RNA-Seq Expression	Lcy02g016110
Synteny	Lcy02g016110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACTTGGGAAACTGCTTGCATACGAGCAAAGTTGTAACGCTAGGAATCTTGGTTTCTGGAGGAATTGTGTTGCAGTTTTTGGTCAGTAGAGTCTTTCATTGACTAACACTTGCTCAATAACTTCACCATTTTTATTTTCTTAATCTTTCACAGGCAATTTGCTGTGTGCAGGCCCTTTTGCTATTTCTTATACAGAATTCTGAATTGTTCATTTGTGTGTGGTAATGGCAGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGGTAAGATTGAAAAATGATAGCTCTGAGCATTATTTCCACTGTATGATAATTGATATCTTCGAAACTTTCTCAGCAGTTGAACCCGAATTTGTTTCAGTAGCCATAGTATCTTACTGGGAAATTTTTGTAGAAAACCAGTCATTCTGGGTTATCTTAAGATATAATATCATAGTTTTTTACCTTTTGGTCTTTGATGGGAAGTAGACTTGACGTGGAATTAGAATTAAGGACCTATCAAACATAAAATTTAAAGTTCAATAGTCTAAGAAGTATGTGGACTAAGTAGACACAACGCAACACTATAAGTTCACAAACTCATTTAGGTACTAAATATATCTTTGAAACTTTCCCATTACGATCTTATTTCACCGTTCTTGCAGTGGTTATGTATGTTCTTCTCCCAATGCCTTTGCTGTTTTTTGCTGGCTCTGATAGTTCTTCGCTATTTTCCGAATCTGGAGACAGGTTTGTTTCTGATTATCATATTTTGTTCCTAGACAATTAAAATCCATTTCTAGGCTAGCCAGTCGATAACCAATTTATTTTTAACGATTAACGAAACAGCTGGGTGAATGCAACTAAATTTTTAACTGGAGCTTCAGCAGTTGGAAGCATTGCCATACCTGTAATTTTGAAGCATGCTGATATTATCGGTTGGGGAGCACTTGCACTGGACCTCTCGTCCCTTCTAGTTTTTGTGGTGGCCATTTTTTGTTATCTCTGGATGAGTAATGAAGACGACTATAATATACTCTAA

mRNA sequence

ATGGCAGACTTGGGAAACTGCTTGCATACGAGCAAAGTTGTAACGCTAGGAATCTTGGTTTCTGGAGGAATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGTGGTTATGTATGTTCTTCTCCCAATGCCTTTGCTGTTTTTTGCTGGCTCTGATAGTTCTTCGCTATTTTCCGAATCTGGAGACAGCTGGGTGAATGCAACTAAATTTTTAACTGGAGCTTCAGCAGTTGGAAGCATTGCCATACCTGTAATTTTGAAGCATGCTGATATTATCGGTTGGGGAGCACTTGCACTGGACCTCTCGTCCCTTCTAGTTTTTGTGGTGGCCATTTTTTGTTATCTCTGGATGAGTAATGAAGACGACTATAATATACTCTAA

Coding sequence (CDS)

ATGGCAGACTTGGGAAACTGCTTGCATACGAGCAAAGTTGTAACGCTAGGAATCTTGGTTTCTGGAGGAATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGTGGTTATGTATGTTCTTCTCCCAATGCCTTTGCTGTTTTTTGCTGGCTCTGATAGTTCTTCGCTATTTTCCGAATCTGGAGACAGCTGGGTGAATGCAACTAAATTTTTAACTGGAGCTTCAGCAGTTGGAAGCATTGCCATACCTGTAATTTTGAAGCATGCTGATATTATCGGTTGGGGAGCACTTGCACTGGACCTCTCGTCCCTTCTAGTTTTTGTGGTGGCCATTTTTTGTTATCTCTGGATGAGTAATGAAGACGACTATAATATACTCTAA

Protein sequence

MADLGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYLWMSNEDDYNIL

Homology

[Close]

BLAST of Lcy02g016110 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-44
Identity = 90/127 (70.87%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 4   LGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSS 63
           L  CL   K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYL 123
           LF+ES +SW+NA KFLTGASAVGS+AIP ILKHA +IGWGALALDLSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WMSNEDD 131
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Lcy02g016110 vs. ExPASy Swiss-Prot
Match: P47111 (Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS55 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-09
Identity = 38/127 (29.92%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 11  SKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMP-LLFFAGS--DSSSLFSE 70
           +K+++L   ++ G +L  L+CAL++N++PL  +++++L P+P  +F AG+   +S   S+
Sbjct: 10  TKIISLSGFLALGFLLVILSCALFHNYYPLFDILIFLLAPIPNTIFNAGNKYHTSDFMSD 69

Query: 71  SGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYLWM-- 130
           S ++  +   FLTG      IA+PV+  H  +IG  +  + +   L+   +I  + W   
Sbjct: 70  SSNTGQDLAHFLTGMLVTSGIALPVVFYHCQLIGHLSCIMCMIGGLIIYSSIVIFKWFFK 129

[Close]

BLAST of Lcy02g016110 vs. ExPASy Swiss-Prot
Match: Q9UUH1 (Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vps55 PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-08
Identity = 33/123 (26.83%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 12  KVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMP-LLFFAGSDSSSLFSESGD 71
           K++ L  +++ G +L  L+CAL+ NW+PLL V+ ++L P+P LL    S S     E   
Sbjct: 6   KIIGLSSVLAVGFMLVILSCALFKNWYPLLIVIPFILAPLPNLLTKKYSTSHDFLQEEDR 65

Query: 72  SWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDL--SSLLVFVVAIFCYLWMSNE 131
           + ++  +F  GA+     A+P++  +  +IG  A  +     S++  V+ ++   ++ +E
Sbjct: 66  NLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYSQAFVQHE 125

[Close]

BLAST of Lcy02g016110 vs. ExPASy Swiss-Prot
Match: Q54VP1 (Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoideum OX=44689 GN=vps55 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 36/113 (31.86%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 23  GIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSSLFSESGDSWVNATKFLTGA 82
           G++   LAC + ++ +P++ V  Y L P P +     DS   FS    ++ +   FLTG 
Sbjct: 15  GLLFNILACIVSHSGYPIIVVASYFLAPFPNILCRNRDS---FSSEKGTFEDIGLFLTGL 74

Query: 83  SAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYLWM---SNEDDYN 133
                 AIP+IL H+DII   ALA  ++  +     I  +LW     N++D N
Sbjct: 75  FITSGFAIPMILAHSDIISGKALAFSMAGGVTVYATIITFLWFFNRHNDEDNN 124

[Close]

BLAST of Lcy02g016110 vs. ExPASy Swiss-Prot
Match: Q32PD8 (Leptin receptor overlapping transcript-like 1 OS=Bos taurus OX=9913 GN=LEPROTL1 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-06
Identity = 35/117 (29.91%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 23  GIVLQFLACAL--YNNWWPLLSVVMYVLLPMPLLFFAGSDSSSLFSESGDSWVNATK--- 82
           G++   L CAL  YN +WPL  +  Y+L P+P         +    +  D+  NA K   
Sbjct: 17  GLMFLMLGCALPIYNQYWPLFVLFFYILSPIPYCI------ARRLVDDTDAMSNACKELA 76

Query: 83  -FLTGASAVGSIAIPVILKHADIIGWGALALDLS-SLLVFVVAIFCYLWMSNEDDYN 133
            FLT    V +  +P++   A++I WGA AL L+ + ++F   +  +L   + DD++
Sbjct: 77  IFLTTGIVVSAFGLPIVFARANLIEWGACALVLTGNTVIFATILGFFLVFGSNDDFS 127

[Close]

BLAST of Lcy02g016110 vs. ExPASy TrEMBL
Match: A0A6J1DSZ0 (vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX=3673 GN=LOC111024101 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MADLGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSD 60
           MADLG C H SK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+LLPMPLLFFAGSD
Sbjct: 1   MADLGYCWHMSKLVTLGVLVSGGIVLQFLACVLYXNWWPLLSVIMYILLPMPLLFFAGSD 60

Query: 61  SSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIF 120
           +SSL SESGDSWVNATKFLTGAS VGSIAIPVILKHA+IIGWGALALDLSSLLVFVVAI 
Sbjct: 61  TSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIIGWGALALDLSSLLVFVVAIL 120

Query: 121 CYLWMSNEDDYNIL 135
           CYLWMSNEDDYN L
Sbjct: 121 CYLWMSNEDDYNTL 134

[Close]

BLAST of Lcy02g016110 vs. ExPASy TrEMBL
Match: A0A7J7CJN6 (Vacuolar protein sorting 55 (VPS55) family protein isoform 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00715 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.2e-50
Identity = 104/138 (75.36%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 1   MADL----GNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL     +CLHT K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFF
Sbjct: 1   MADLPGYCRSCLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTVIMYVLLPMPLLFF 60

Query: 61  AGSDSSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFV 120
           AGSD S+L SES DSWVNATKFLTGASAVGSIAIP ILKHA +IGWGALA++LSS  VFV
Sbjct: 61  AGSDRSALLSESNDSWVNATKFLTGASAVGSIAIPTILKHAGVIGWGALAMELSSFFVFV 120

Query: 121 VAIFCYLWMSNEDDYNIL 135
           +AI CY+ M  EDDY++L
Sbjct: 121 IAIMCYISMGEEDDYSML 138

[Close]

BLAST of Lcy02g016110 vs. ExPASy TrEMBL
Match: A0A5N6R6S4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012387 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49
Identity = 97/129 (75.19%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 6   NCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSSLF 65
           +CLHT K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFFAGSDSSSLF
Sbjct: 11  SCLHTGKLALLAILVSGGIVLQILACALYNNWWPMLTVLMYVLLPMPLLFFAGSDSSSLF 70

Query: 66  SESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYLWM 125
           SES ++WVNATKFLTGAS +GS+AIP ILKHA +IGWGALA++ SS  +FV+AI CY+ M
Sbjct: 71  SESDNNWVNATKFLTGASTIGSLAIPAILKHAGVIGWGALAMEFSSFFIFVLAIMCYIRM 130

Query: 126 SNEDDYNIL 135
           ++EDDYN+L
Sbjct: 131 NSEDDYNVL 139

[Close]

BLAST of Lcy02g016110 vs. ExPASy TrEMBL
Match: A0A2C9U468 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.1e-49
Identity = 104/138 (75.36%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 1   MADLGN----CLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL      CL + K+  L ILVSGGI+LQ LACALYNNWWP+LSV+MYVLLPMPLLFF
Sbjct: 1   MADLPGYVRACLQSGKLAFLAILVSGGIILQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61  AGSDSSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFV 120
           AGSDSSSLFSES +SWVNATKFLTGASAVGSIAIP ILKHA +IGWGALA++LSS  VFV
Sbjct: 61  AGSDSSSLFSESNNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFV 120

Query: 121 VAIFCYLWMSNEDDYNIL 135
           +AI CY+ M++ED Y+IL
Sbjct: 121 IAIMCYISMNDEDGYSIL 138

[Close]

BLAST of Lcy02g016110 vs. ExPASy TrEMBL
Match: A0A2H5PBE6 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_121060 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.6e-49
Identity = 104/138 (75.36%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 1   MADLGN----CLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL      CLHT K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLP+PLLFF
Sbjct: 1   MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTVLMYVLLPLPLLFF 60

Query: 61  AGSDSSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFV 120
           AGS+ SSLFSES +SWVNATKFLTGASAVGSIAIPVILKHA +IGWGALA++LSS  V V
Sbjct: 61  AGSNGSSLFSESENSWVNATKFLTGASAVGSIAIPVILKHAGVIGWGALAMELSSFFVLV 120

Query: 121 VAIFCYLWMSNEDDYNIL 135
           +AI CY+ MS +DDY+IL
Sbjct: 121 LAIMCYIGMSEDDDYSIL 138

[Close]

BLAST of Lcy02g016110 vs. NCBI nr
Match: XP_022157395.1 (vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP_022157399.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia])

HSP 1 Score: 238.4 bits (607), Expect = 3.5e-59
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MADLGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSD 60
           MADLG C H SK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+LLPMPLLFFAGSD
Sbjct: 1   MADLGYCWHMSKLVTLGVLVSGGIVLQFLACVLYXNWWPLLSVIMYILLPMPLLFFAGSD 60

Query: 61  SSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIF 120
           +SSL SESGDSWVNATKFLTGAS VGSIAIPVILKHA+IIGWGALALDLSSLLVFVVAI 
Sbjct: 61  TSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIIGWGALALDLSSLLVFVVAIL 120

Query: 121 CYLWMSNEDDYNIL 135
           CYLWMSNEDDYN L
Sbjct: 121 CYLWMSNEDDYNTL 134

[Close]

BLAST of Lcy02g016110 vs. NCBI nr
Match: XP_038679642.1 (vacuolar protein sorting-associated protein 55 homolog [Tripterygium wilfordii] >XP_038679643.1 vacuolar protein sorting-associated protein 55 homolog [Tripterygium wilfordii] >XP_038679644.1 vacuolar protein sorting-associated protein 55 homolog [Tripterygium wilfordii] >KAF5734268.1 Vacuolar protein sorting 55 (VPS55) family protein isoform 1 [Tripterygium wilfordii])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 104/138 (75.36%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 1   MADL----GNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL     +CLHT K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFF
Sbjct: 1   MADLPGYCRSCLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTVIMYVLLPMPLLFF 60

Query: 61  AGSDSSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFV 120
           AGSD S+L SES DSWVNATKFLTGASAVGSIAIP ILKHA +IGWGALA++LSS  VFV
Sbjct: 61  AGSDRSALLSESNDSWVNATKFLTGASAVGSIAIPTILKHAGVIGWGALAMELSSFFVFV 120

Query: 121 VAIFCYLWMSNEDDYNIL 135
           +AI CY+ M  EDDY++L
Sbjct: 121 IAIMCYISMGEEDDYSML 138

[Close]

BLAST of Lcy02g016110 vs. NCBI nr
Match: KAE8055554.1 (hypothetical protein FH972_012387 [Carpinus fangiana])

HSP 1 Score: 205.3 bits (521), Expect = 3.3e-49
Identity = 97/129 (75.19%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 6   NCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSSLF 65
           +CLHT K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLPMPLLFFAGSDSSSLF
Sbjct: 11  SCLHTGKLALLAILVSGGIVLQILACALYNNWWPMLTVLMYVLLPMPLLFFAGSDSSSLF 70

Query: 66  SESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYLWM 125
           SES ++WVNATKFLTGAS +GS+AIP ILKHA +IGWGALA++ SS  +FV+AI CY+ M
Sbjct: 71  SESDNNWVNATKFLTGASTIGSLAIPAILKHAGVIGWGALAMEFSSFFIFVLAIMCYIRM 130

Query: 126 SNEDDYNIL 135
           ++EDDYN+L
Sbjct: 131 NSEDDYNVL 139

[Close]

BLAST of Lcy02g016110 vs. NCBI nr
Match: XP_021599879.1 (vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY24482.1 hypothetical protein MANES_17G019200v8 [Manihot esculenta] >OAY24520.2 hypothetical protein MANES_17G019200v8 [Manihot esculenta])

HSP 1 Score: 204.9 bits (520), Expect = 4.3e-49
Identity = 104/138 (75.36%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 1   MADLGN----CLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL      CL + K+  L ILVSGGI+LQ LACALYNNWWP+LSV+MYVLLPMPLLFF
Sbjct: 1   MADLPGYVRACLQSGKLAFLAILVSGGIILQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61  AGSDSSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFV 120
           AGSDSSSLFSES +SWVNATKFLTGASAVGSIAIP ILKHA +IGWGALA++LSS  VFV
Sbjct: 61  AGSDSSSLFSESNNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFV 120

Query: 121 VAIFCYLWMSNEDDYNIL 135
           +AI CY+ M++ED Y+IL
Sbjct: 121 IAIMCYISMNDEDGYSIL 138

[Close]

BLAST of Lcy02g016110 vs. NCBI nr
Match: XP_006436802.1 (vacuolar protein sorting-associated protein 55 homolog [Citrus clementina] >XP_006485379.1 vacuolar protein sorting-associated protein 55 homolog [Citrus sinensis] >GAY49689.1 hypothetical protein CUMW_121060 [Citrus unshiu] >ESR50042.1 hypothetical protein CICLE_v10033036mg [Citrus clementina] >ESR50043.1 hypothetical protein CICLE_v10033036mg [Citrus clementina] >GAY49690.1 hypothetical protein CUMW_121060 [Citrus unshiu])

HSP 1 Score: 203.8 bits (517), Expect = 9.6e-49
Identity = 104/138 (75.36%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 1   MADLGN----CLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFF 60
           MADL      CLHT K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVLLP+PLLFF
Sbjct: 1   MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTVLMYVLLPLPLLFF 60

Query: 61  AGSDSSSLFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFV 120
           AGS+ SSLFSES +SWVNATKFLTGASAVGSIAIPVILKHA +IGWGALA++LSS  V V
Sbjct: 61  AGSNGSSLFSESENSWVNATKFLTGASAVGSIAIPVILKHAGVIGWGALAMELSSFFVLV 120

Query: 121 VAIFCYLWMSNEDDYNIL 135
           +AI CY+ MS +DDY+IL
Sbjct: 121 LAIMCYIGMSEDDDYSIL 138

[Close]

BLAST of Lcy02g016110 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-45
Identity = 90/127 (70.87%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 4   LGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSS 63
           L  CL   K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYL 123
           LF+ES +SW+NA KFLTGASAVGS+AIP ILKHA +IGWGALALDLSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WMSNEDD 131
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Lcy02g016110 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-45
Identity = 90/127 (70.87%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 4   LGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSS 63
           L  CL   K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYL 123
           LF+ES +SW+NA KFLTGASAVGS+AIP ILKHA +IGWGALALDLSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WMSNEDD 131
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Lcy02g016110 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-45
Identity = 90/127 (70.87%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 4   LGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSS 63
           L  CL   K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYL 123
           LF+ES +SW+NA KFLTGASAVGS+AIP ILKHA +IGWGALALDLSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WMSNEDD 131
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Lcy02g016110 vs. TAIR 10
Match: AT1G32410.4 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-45
Identity = 90/127 (70.87%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 4   LGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSS 63
           L  CL   K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYL 123
           LF+ES +SW+NA KFLTGASAVGS+AIP ILKHA +IGWGALALDLSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WMSNEDD 131
            + +  D
Sbjct: 128 CIGDASD 134

[Close]

BLAST of Lcy02g016110 vs. TAIR 10
Match: AT1G32410.5 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-45
Identity = 90/127 (70.87%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 4   LGNCLHTSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLLPMPLLFFAGSDSSS 63
           L  CL   K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVLLPMPLLFF GSDS+S
Sbjct: 8   LRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTS 67

Query: 64  LFSESGDSWVNATKFLTGASAVGSIAIPVILKHADIIGWGALALDLSSLLVFVVAIFCYL 123
           LF+ES +SW+NA KFLTGASAVGS+AIP ILKHA +IGWGALALDLSS +VF+VAI  Y+
Sbjct: 68  LFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYI 127

Query: 124 WMSNEDD 131
            + +  D
Sbjct: 128 CIGDASD 134

The following BLAST results are available for this feature:

BLAST of Lcy02g016110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	1.9e-44	70.87	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]
P47111	3.5e-09	29.92	Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (stra...	[more]
Q9UUH1	3.8e-08	26.83	Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (str...	[more]
Q54VP1	2.5e-07	31.86	Vacuolar protein sorting-associated protein 55 homolog OS=Dictyostelium discoide...	[more]
Q32PD8	3.6e-06	29.91	Leptin receptor overlapping transcript-like 1 OS=Bos taurus OX=9913 GN=LEPROTL1 ...	[more]

BLAST of Lcy02g016110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSZ0	1.7e-59	88.81	vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX...	[more]
A0A7J7CJN6	7.2e-50	75.36	Vacuolar protein sorting 55 (VPS55) family protein isoform 1 OS=Tripterygium wil...	[more]
A0A5N6R6S4	1.6e-49	75.19	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012387 PE=3 SV=1	[more]
A0A2C9U468	2.1e-49	75.36	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=3 SV=...	[more]
A0A2H5PBE6	4.6e-49	75.36	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_121060 PE=3 SV=1	[more]

BLAST of Lcy02g016110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157395.1	3.5e-59	88.81	vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP...	[more]
XP_038679642.1	1.5e-49	75.36	vacuolar protein sorting-associated protein 55 homolog [Tripterygium wilfordii] ...	[more]
KAE8055554.1	3.3e-49	75.19	hypothetical protein FH972_012387 [Carpinus fangiana]	[more]
XP_021599879.1	4.3e-49	75.36	vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY2...	[more]
XP_006436802.1	9.6e-49	75.36	vacuolar protein sorting-associated protein 55 homolog [Citrus clementina] >XP_0...	[more]

BLAST of Lcy02g016110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32410.1	1.4e-45	70.87	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	1.4e-45	70.87	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	1.4e-45	70.87	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.4	1.4e-45	70.87	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.5	1.4e-45	70.87	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 13..129 e-value: 1.4E-33 score: 115.3
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 4..131
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 4..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g016110.1	Lcy02g016110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane