Lcy02g015950 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g015950
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA-directed RNA polymerase II subunit RPB2
Location	Chr02: 42798918 .. 42800464 (+)
RNA-Seq Expression	Lcy02g015950
Synteny	Lcy02g015950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGAATTGGGCGTCAAAGTATCTGAGAAATTGAAATGGAGAAATCCTTCACTCTGATTCAAACAATTGCAACTGCCGGAGCTTTCTCTGCGATTTCATTCTGGTGAGACTTTTCTTCTTTCTCTTTCACTTCATGCTCCGTTTTGCTTGAATCTGGTCGCCATTTCTTCTTCTGGATTTCGTAACTCATTCATCTTGCTCCGTTTTTGTTAGGTATGGTTTCATGTTTGGAAGAGAATCCGCTCGAAAAGACTTGGGAGATTTGATTGAAGATCTACGCCGTGGAAGCTCCAACTCCGATTCTTCTTCTGCAACTCCTCATTCTTGACTTCGCACTGTATGTTCGTTCCTTCAATCTGTTTCGGTTATTCTTTTGGATGAACATAGGATGATGGAGTTGTTCACTTGCTTTTACTGATCGTTTCGACTGTGTTGGAGAAGTTCATTCTAGATTAATGAACAGCACAACTTAACTTATTAAACAAGGAGAGATTCGTAGTTTTTGATTAGAGGCGTTTGAAATGTCGGTTAACCTAGATATTTGAAATATCGATTCTAAGGCATTTGAAAGGAAAATTTGTTTCTCCATGTATTTGTGAACAGATCATTTGCAACCTTGGGGAATGGGGTGGGTCAAGGCATCGAGTGCTGGGCAAGTAAAAGATTTCCAGCCAAAAGTTCGCATAGATGAACCCTAGATTTTCCTTGAATTTGGCCATGCTTCTGTAGAAATGAATACTTGCAAATGCCAAAGTGCAGCCGGTCAATGTTTTCTAGAAATTTCCTGTGGTTGGATTCTTTCTGCGTACCCGAGATTTTGTTCTTGGATTTGGATTGTATTCTTTTGTTTTCTTTTCTAGAAATTTTCCTTGAGATGAAGGCAAGTCTTTTGACCATTTGGATGACATCTTTTTTTTTTGTGGTATCTAGGCAATTGAAGGTTACTGAGGTATGGTTTCTCACCATTTGGATGGTTTGCTGATCTTTGTTTGTAGTTCTTCAGTAAATTCTCATTTTGATCTTTTGTAAAGAAAAGAAAGACAACTGAAGACCAATTCAAACCATGAATAGACCTTGTCTCCAGCAATAAGAATCTCAGCTAAAGATATTTTATGCTTTAAACAGAGAACAAGAAAGAAGAGGGATCTTTTTGGCTGAAACTCAGAGAAGAAAGGTTTTAAGGATCAAGATAAAGGAGTTATAAACAGTAATTTCAAATTGATTTGATGAGAGAAGTTTCCATTTTTCATTTTCCCCCTTGTCTTTTATGCTGAAAATCGCTGGTTTACTATCATTATTATTATTATTTTGAGTTCGACGAAGAATCCGAGTTCAGAGAGTACATTTCAATTACCTATCCTTAGTTTTTGTTTGTTGTCGTTGCTGTCCTACAAATACTCGTACCAATTTTGACTTGGGGCTTGGTGAGTTTGGGAGATGTTTGTCTCAGACCACCTGATTTCTACCTGTGTTAAAATTAGTACTCGTTATATTTTTCATGATATATCATATTTCTGAACATGGTGTACATTGAAACAACGTGTTTT

mRNA sequence

TCTGAATTGGGCGTCAAAGTATCTGAGAAATTGAAATGGAGAAATCCTTCACTCTGATTCAAACAATTGCAACTGCCGGAGCTTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAATCCGCTCGAAAAGACTTGGGAGATTTGATTGAAGATCTACGCCGTGGAAGCTCCAACTCCGATTCTTCTTCTGCAACTCCTCATTCTTGACTTCGCACTGCAATTGAAGGTTACTGAGAGAACAAGAAAGAAGAGGGATCTTTTTGGCTGAAACTCAGAGAAGAAAGGTTTTAAGGATCAAGATAAAGGAGTTATAAACAGTAATTTCAAATTGATTTGATGAGAGAAGTTTCCATTTTTCATTTTCCCCCTTGTCTTTTATGCTGAAAATCGCTGGTTTACTATCATTATTATTATTATTTTGAGTTCGACGAAGAATCCGAGTTCAGAGAGTACATTTCAATTACCTATCCTTAGTTTTTGTTTGTTGTCGTTGCTGTCCTACAAATACTCGTACCAATTTTGACTTGGGGCTTGGTGAGTTTGGGAGATGTTTGTCTCAGACCACCTGATTTCTACCTGTGTTAAAATTAGTACTCGTTATATTTTTCATGATATATCATATTTCTGAACATGGTGTACATTGAAACAACGTGTTTT

Coding sequence (CDS)

ATGGAGAAATCCTTCACTCTGATTCAAACAATTGCAACTGCCGGAGCTTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAATCCGCTCGAAAAGACTTGGGAGATTTGATTGAAGATCTACGCCGTGGAAGCTCCAACTCCGATTCTTCTTCTGCAACTCCTCATTCTTGA

Protein sequence

MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS

Homology

[Close]

BLAST of Lcy02g015950 vs. ExPASy TrEMBL
Match: A0A6J1DRK3 (uncharacterized protein LOC111023182 OS=Momordica charantia OX=3673 GN=LOC111023182 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-20
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS 60
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSNSDSS A  +S
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNSDSSPAASNS 60

[Close]

BLAST of Lcy02g015950 vs. ExPASy TrEMBL
Match: A0A6J1I859 (uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP 59
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSN DSSSATP
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN-DSSSATP 57

[Close]

BLAST of Lcy02g015950 vs. ExPASy TrEMBL
Match: A0A0A0LIB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912310 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-20
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS 60
          M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRG S  DSSS TPHS
Sbjct: 35 MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 94

[Close]

BLAST of Lcy02g015950 vs. ExPASy TrEMBL
Match: A0A6J1F0E3 (uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC111438056 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP 59
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSN DSSSA P
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN-DSSSANP 57

[Close]

BLAST of Lcy02g015950 vs. ExPASy TrEMBL
Match: A0A5A7TAA3 (Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003920 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS 60
          M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRG S SDSSS TP S
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60

[Close]

BLAST of Lcy02g015950 vs. NCBI nr
Match: XP_023553989.1 (uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 3.8e-21
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP 59
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSS+SDSSSATP
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSDSDSSSATP 58

[Close]

BLAST of Lcy02g015950 vs. NCBI nr
Match: XP_022156252.1 (uncharacterized protein LOC111023182 [Momordica charantia] >XP_022156260.1 uncharacterized protein LOC111023182 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 4.2e-20
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS 60
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSNSDSS A  +S
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSNSDSSPAASNS 60

[Close]

BLAST of Lcy02g015950 vs. NCBI nr
Match: XP_022973256.1 (uncharacterized protein LOC111471813 [Cucurbita maxima] >KAG7011478.1 hypothetical protein SDJN02_26384 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 5.5e-20
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATP 59
          MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRGSSN DSSSATP
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSN-DSSSATP 57

[Close]

BLAST of Lcy02g015950 vs. NCBI nr
Match: KGN60447.1 (hypothetical protein Csa_002577 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS 60
          M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRG S  DSSS TPHS
Sbjct: 35 MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 94

[Close]

BLAST of Lcy02g015950 vs. NCBI nr
Match: XP_004148372.3 (uncharacterized protein LOC101212897 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS 60
          M KSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLI+DLRRG S  DSSS TPHS
Sbjct: 24 MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 83

[Close]

BLAST of Lcy02g015950 vs. TAIR 10
Match: AT4G17085.1 (Putative membrane lipoprotein )

HSP 1 Score: 89.7 bits (221), Expect = 8.4e-19
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIEDLRRGSSNSDSSSATPHS 60
          M+KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LIE+LRRG SNSDS   TPHS
Sbjct: 1  MQKSFSLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDS---TPHS 57

The following BLAST results are available for this feature:

BLAST of Lcy02g015950 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g015950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRK3	2.0e-20	91.67	uncharacterized protein LOC111023182 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1I859	2.6e-20	96.55	uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813...	[more]
A0A0A0LIB2	7.7e-20	88.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912310 PE=4 SV=1	[more]
A0A6J1F0E3	1.0e-19	94.83	uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC1114380...	[more]
A0A5A7TAA3	1.3e-19	90.00	Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Lcy02g015950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553989.1	3.8e-21	96.55	uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]	[more]
XP_022156252.1	4.2e-20	91.67	uncharacterized protein LOC111023182 [Momordica charantia] >XP_022156260.1 uncha...	[more]
XP_022973256.1	5.5e-20	96.55	uncharacterized protein LOC111471813 [Cucurbita maxima] >KAG7011478.1 hypothetic...	[more]
KGN60447.1	1.6e-19	88.33	hypothetical protein Csa_002577 [Cucumis sativus]	[more]
XP_004148372.3	1.6e-19	88.33	uncharacterized protein LOC101212897 [Cucumis sativus]	[more]

BLAST of Lcy02g015950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17085.1	8.4e-19	75.00	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38384:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..60
None	No IPR available	PANTHER	PTHR38384	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g015950.1	Lcy02g015950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032774	RNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity