Lcy02g015670 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g015670
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr02: 42441027 .. 42441449 (+)
RNA-Seq ExpressionLcy02g015670
SyntenyLcy02g015670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCCTCGAGCGATCCGAGCGCTTCCCCACTTAGTGGGGAGCTTCAAACCCCAGCTAGTCTTTTTAATGGAAACCAAATGCGATTCAAAAAGGAGTGAAAGAATTAGAGTTAGCATGATGTTTGAGTTTTGTTTGTGTGTTTCGAGTAACGGTAGAAGTGGAGGCCTAATGCTCATTTGGAACTCTTTTATGAAGGTCAATATAAATTCTTTCTCTGAACGGCACATTGATGCATCTATTCAAGACAACCGAGGGGATTGGAGATTTACTAGCTTCTATGGCAACCCAGAAACAGAGAAAAGGCGGTTTTCTTGGGAGCTCCTTGACAGGTTGTATGAGGAAAATGAGAGGCCTTGGTTGATTGGTGGTGACTTCAATGAGATCTTGTCGGTTGAAGAGAAAAAAAGGAGGAATGGCTAG

mRNA sequence

ATGAACCCTCGAGCGATCCGAGCGCTTCCCCACTTAGTGGGGAGCTTCAAACCCCAGCTAGTCTTTTTAATGGAAACCAAATGCGATTCAAAAAGGAGTGAAAGAATTAGAGTTAGCATGATGTTTGAGTTTTGTTTGTGTGTTTCGAGTAACGGTAGAAGTGGAGGCCTAATGCTCATTTGGAACTCTTTTATGAAGGTCAATATAAATTCTTTCTCTGAACGGCACATTGATGCATCTATTCAAGACAACCGAGGGGATTGGAGATTTACTAGCTTCTATGGCAACCCAGAAACAGAGAAAAGGCGGTTTTCTTGGGAGCTCCTTGACAGGTTGTATGAGGAAAATGAGAGGCCTTGGTTGATTGGTGGTGACTTCAATGAGATCTTGTCGGTTGAAGAGAAAAAAAGGAGGAATGGCTAG

Coding sequence (CDS)

ATGAACCCTCGAGCGATCCGAGCGCTTCCCCACTTAGTGGGGAGCTTCAAACCCCAGCTAGTCTTTTTAATGGAAACCAAATGCGATTCAAAAAGGAGTGAAAGAATTAGAGTTAGCATGATGTTTGAGTTTTGTTTGTGTGTTTCGAGTAACGGTAGAAGTGGAGGCCTAATGCTCATTTGGAACTCTTTTATGAAGGTCAATATAAATTCTTTCTCTGAACGGCACATTGATGCATCTATTCAAGACAACCGAGGGGATTGGAGATTTACTAGCTTCTATGGCAACCCAGAAACAGAGAAAAGGCGGTTTTCTTGGGAGCTCCTTGACAGGTTGTATGAGGAAAATGAGAGGCCTTGGTTGATTGGTGGTGACTTCAATGAGATCTTGTCGGTTGAAGAGAAAAAAAGGAGGAATGGCTAG

Protein sequence

MNPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIWNSFMKVNINSFSERHIDASIQDNRGDWRFTSFYGNPETEKRRFSWELLDRLYEENERPWLIGGDFNEILSVEEKKRRNG
Homology
BLAST of Lcy02g015670 vs. ExPASy TrEMBL
Match: A0A6J1DUG8 (uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024135 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 71/134 (52.99%), Postives = 88/134 (65.67%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           NP   R L +LV   +PQLVFL ETK +     R +  + F+ C+ V+S G+SGGLML+W
Sbjct: 13  NPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLW 72

Query: 62  NSFMKVNINSFSERHIDASIQDNRGDWRFTSFYGNPETEKRRFSWELLDRLYEENERPWL 121
           NS   V I S S  HID+ I D  G WRFT FYGNP T KR  SW+LL+RL    + PW+
Sbjct: 73  NSDSNVRIQSMSPGHIDSIITDKYGSWRFTGFYGNPCTYKRSASWKLLERLARMMDLPWI 132

Query: 122 IGGDFNEILSVEEK 136
           IGGDFNEI+S+ EK
Sbjct: 133 IGGDFNEIVSMTEK 146

BLAST of Lcy02g015670 vs. ExPASy TrEMBL
Match: A0A2N9GQE6 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29585 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 66/135 (48.89%), Postives = 94/135 (69.63%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           N   I AL +LV +  P+++FLMETK D K+ E +RV + F+FC  + S G SGGL L+W
Sbjct: 499 NTECILALHNLVKTQGPKVLFLMETKLDGKKMEVLRVDLRFKFCFTIPSRGSSGGLALLW 558

Query: 62  NSFMKVNINSFSERHIDASIQ-DNRGDWRFTSFYGNPETEKRRFSWELLDRLYEENERPW 121
           N  +++ I ++++ HIDA +Q  +   WRFT FYG+PE+ + R SW LL+RL+  ++ PW
Sbjct: 559 NDPVELIIQNYTQHHIDAHVQVPSSRSWRFTGFYGHPESHRHRESWALLNRLHGMDQLPW 618

Query: 122 LIGGDFNEILSVEEK 136
           L  GDFNEILSVEE+
Sbjct: 619 LCMGDFNEILSVEER 633

BLAST of Lcy02g015670 vs. ExPASy TrEMBL
Match: A0A2N9ESV7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5765 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-29
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           NP+AIR L +L     P ++FL+ETK D KR E++R S+ F++   V S GRSGGL L+W
Sbjct: 415 NPKAIRILRNLAKEKDPVMMFLIETKLDVKRMEKVRASVGFQYVFTVPSKGRSGGLALMW 474

Query: 62  NSFMKVNINSFSERHIDASI-QDNRGDWRFTSFYGNPETEKRRFSWELLDRLYEENERPW 121
              ++V + +FS+ H+D  +  D    WR T FYG+PE  KR  +W+LL+ L   N+ PW
Sbjct: 475 KDSIEVRVQTFSQHHVDVHVHMDTNSWWRLTGFYGHPEPHKRHETWKLLNHLGSRNQAPW 534

Query: 122 LIGGDFNEILSVEEKK 137
           L  GDFNEILS EEK+
Sbjct: 535 LCMGDFNEILSQEEKR 550

BLAST of Lcy02g015670 vs. ExPASy TrEMBL
Match: A0A2N9IXX1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57290 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-29
Identity = 67/132 (50.76%), Postives = 95/132 (71.97%), Query Frame = 0

Query: 5   AIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIWNSF 64
           ++ AL +LV + +P+++FLMETK DSKR E IRV + F+FC  V S  RSGGL ++WN  
Sbjct: 513 SVLALHNLVKNQEPKVLFLMETKLDSKRMEGIRVKLRFKFCFSVPSLRRSGGLAMMWNDP 572

Query: 65  MKVNINSFSERHIDASIQDNRG-DWRFTSFYGNPETEKRRFSWELLDRLYEENERPWLIG 124
           ++++I +FS+ HIDA +Q N G  WRFT FYG+PE  +++ SW LLD L   +  PWL  
Sbjct: 573 VQLSIKTFSQNHIDAHVQINDGIIWRFTGFYGHPEGHRKKESWALLDTLNSMDSLPWLSM 632

Query: 125 GDFNEILSVEEK 136
           GD+NEILS++E+
Sbjct: 633 GDYNEILSLDER 644

BLAST of Lcy02g015670 vs. ExPASy TrEMBL
Match: A0A2N9EUS3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10428 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-29
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           NP+AIR L +L     P ++FL+ETK D KR E++R S+ F++   V S GRSGGL L+W
Sbjct: 439 NPKAIRILRNLAKEKDPVMMFLIETKLDVKRMEKVRASVGFQYVFTVPSKGRSGGLALMW 498

Query: 62  NSFMKVNINSFSERHIDASI-QDNRGDWRFTSFYGNPETEKRRFSWELLDRLYEENERPW 121
              ++V + +FS+ H+D  +  D    WR T FYG+PE  KR  +W+LL+ L   N+ PW
Sbjct: 499 KDSIEVRVQTFSQHHVDVHVHMDTNSWWRLTGFYGHPEPHKRHETWKLLNHLGSRNQAPW 558

Query: 122 LIGGDFNEILSVEEKK 137
           L  GDFNEILS EEK+
Sbjct: 559 LCMGDFNEILSQEEKR 574

BLAST of Lcy02g015670 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-30
Identity = 71/134 (52.99%), Postives = 88/134 (65.67%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           NP   R L +LV   +PQLVFL ETK +     R +  + F+ C+ V+S G+SGGLML+W
Sbjct: 13  NPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLW 72

Query: 62  NSFMKVNINSFSERHIDASIQDNRGDWRFTSFYGNPETEKRRFSWELLDRLYEENERPWL 121
           NS   V I S S  HID+ I D  G WRFT FYGNP T KR  SW+LL+RL    + PW+
Sbjct: 73  NSDSNVRIQSMSPGHIDSIITDKYGSWRFTGFYGNPCTYKRSASWKLLERLARMMDLPWI 132

Query: 122 IGGDFNEILSVEEK 136
           IGGDFNEI+S+ EK
Sbjct: 133 IGGDFNEIVSMTEK 146

BLAST of Lcy02g015670 vs. NCBI nr
Match: XP_042972796.1 (uncharacterized protein LOC122304603 [Carya illinoinensis])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 70/136 (51.47%), Postives = 91/136 (66.91%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           NPR +RAL  LV    P ++FLMETK  S++ ERIRV + FE C  V+S+GR GG+ L+W
Sbjct: 13  NPRGVRALCDLVRREVPAVLFLMETKLTSRQMERIRVRVGFECCFVVNSDGRKGGVALLW 72

Query: 62  NSFMKVNINSFSERHIDASIQDNRG--DWRFTSFYGNPETEKRRFSWELLDRLYEENERP 121
            + +K++I SFS  HIDA I    G  +W+FT  YG+ E EKR  +W LL  L EE   P
Sbjct: 73  RNEIKLSIKSFSLFHIDAKISGTDGGMEWKFTGLYGHLEIEKREETWSLLRALREEGNIP 132

Query: 122 WLIGGDFNEILSVEEK 136
           WL+ GDFNE+LS +EK
Sbjct: 133 WLVCGDFNEVLSQQEK 148

BLAST of Lcy02g015670 vs. NCBI nr
Match: XP_030970584.1 (uncharacterized protein LOC115990959 [Quercus lobata])

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-28
Identity = 70/136 (51.47%), Postives = 90/136 (66.18%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           NPR++RAL +LV  + P+LVFL ETK   KR ERI+  + F   L V  +GRSGGL L+W
Sbjct: 13  NPRSVRALHNLVQYWAPKLVFLSETKVRKKRMERIKERIGFANGLFVPCHGRSGGLALLW 72

Query: 62  NSFMKVNINSFSERHIDASIQDNRGD--WRFTSFYGNPETEKRRFSWELLDRLYEENERP 121
                + I SFS  HIDA I +   +  WRFT FYG+P+T  R+ SW+LLD L  +++ P
Sbjct: 73  TRETDLEIKSFSNHHIDAVITEENSNFKWRFTGFYGHPQTHLRQKSWDLLDFLQGQSQLP 132

Query: 122 WLIGGDFNEILSVEEK 136
           W   GDFNEILS+EEK
Sbjct: 133 WFCFGDFNEILSMEEK 148

BLAST of Lcy02g015670 vs. NCBI nr
Match: XP_030936142.1 (uncharacterized protein LOC115961277 [Quercus lobata])

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-27
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           NP ++RAL +LV  + P+LVFL ETK   KR ERI+  + F   L V  +GRSGGL L+W
Sbjct: 13  NPWSVRALHNLVQCWVPKLVFLSETKVRKKRMERIKERVGFANGLFVPCHGRSGGLALLW 72

Query: 62  NSFMKVNINSFSERHIDASIQDNRGD--WRFTSFYGNPETEKRRFSWELLDRLYEENERP 121
                + I SFS  HIDA I +   +  WRFTSFYG+P+T  R+ SW+LL+ L ++++ P
Sbjct: 73  TRETDLEIKSFSSHHIDAVITEENSNFKWRFTSFYGHPQTHLRQKSWDLLEYLEDQSQLP 132

Query: 122 WLIGGDFNEILSVEEK 136
           W   GDFNEILS+EEK
Sbjct: 133 WFCFGDFNEILSMEEK 148

BLAST of Lcy02g015670 vs. NCBI nr
Match: XP_030970961.1 (uncharacterized protein LOC115991405 [Quercus lobata])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 2   NPRAIRALPHLVGSFKPQLVFLMETKCDSKRSERIRVSMMFEFCLCVSSNGRSGGLMLIW 61
           NP+++R L ++V  + P  VFL ETK   +  ER ++S+ F   L + S+GRSGGL L+W
Sbjct: 13  NPQSVRVLRNIVQQWDPDFVFLSETKLRVRSMERKKMSIGFTNGLVIPSHGRSGGLALLW 72

Query: 62  NSFMKVNINSFSERHIDASIQDNRG-DWRFTSFYGNPETEKRRFSWELLDRLYEENERPW 121
              + V++ SFS+RHIDA + ++RG  WR T FYGNPE  +R+ SWELL  L  + + PW
Sbjct: 73  RKEINVDVQSFSDRHIDAIVTEDRGFKWRITGFYGNPEVHRRKESWELLKVLSRKFQLPW 132

Query: 122 LIGGDFNEILSVEEK 136
           L  GDFNEI+S  EK
Sbjct: 133 LCFGDFNEIVSTSEK 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DUG81.3e-3052.99uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9GQE63.3e-2948.89Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9ESV74.3e-2947.79Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5765 PE=4 SV=1[more]
A0A2N9IXX14.3e-2950.76Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9EUS34.3e-2947.79Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
XP_022157437.12.7e-3052.99uncharacterized protein LOC111024135 [Momordica charantia][more]
XP_042972796.11.2e-2851.47uncharacterized protein LOC122304603 [Carya illinoinensis][more]
XP_030970584.17.5e-2851.47uncharacterized protein LOC115990959 [Quercus lobata][more]
XP_030936142.12.2e-2750.74uncharacterized protein LOC115961277 [Quercus lobata][more]
XP_030970961.12.8e-2748.15uncharacterized protein LOC115991405 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 2..140
e-value: 4.7E-18
score: 67.8
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 7..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g015670.1Lcy02g015670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity