Lcy02g015470 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g015470
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA mismatch repair protein MSH4
LocationChr02: 42267419 .. 42269634 (+)
RNA-Seq ExpressionLcy02g015470
SyntenyLcy02g015470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACGACGGAGGCGAGAGATCGAGCTACGTGATCGGCCTGATCGAGAACAGAGCTAAAGAGGTACGTTTCTGCAATTCCTCACAATCGAACGAATTGTTCATTTCTTCTGGAAAATGCGGGAGGCGAAAAAGAAACAATCGAACGAATTGTTCATTTCTTCTGAAAAATACGTGATCGGCCTGATTAGAGCATTTCGTGATCTTGGAAACAAAAACAAGAAGTGATTTGAGAGTTCCTCAATGCGACCGTTTCCTTTATTCAATCCATAAATCAGATGTATCATGAAAGTAAGAGAAAATGATATGGTAGTTCTACGGCCGAGTTATACTGTACTGTATTCTTAAACTAGATAATACAGGTCGCGCTAGATGATTTTATATGTACGATTGCTCTGTTTGCATTTCATTTAGCTTAAATGCGTTTCTAAGAACTGTTTGAGAAATGAAATGATGATTTATGCTGCTGAGAGATGCACTTTGGAACTTGTATTGGCGTTAAGTGCATAATTGTTTAGCTTAAACTTGAGTAGTTCATACTTGAATGTTTACTCTGATTTGTAAGGACCAGACAGATTGAGTTTACTTCATTTACCATATAAATAATTGTCACGATGTATGCTTTAACCGAAGGTTAGGCTTCGGCTGCCAACATAGGAGAATAGCTTAATTGACCTTAATCTCCTGACAGGTTGGAGTTGCTGCGTTTGACTTGAGGTCAGCTTCACTTCATCTTTCTCAATATATAGAGACCAGTAGCTCCTACCAGAATACGAAAACTTTGCTGCATTTCTATGATCCAATGGTGATTCTTGTTCCTCCAAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCGGTTTTGGCAGACAGATTTTATACTACAGTGAAGAAGGTAATTCATATTCAGGGAGTTCGTTAGTTCTTCACTCAACATGCAGTGTAAGTGGAGATTGCTTGCCCTTATAGAGAAACTATTGAATGTGAAACTCTGTAGGTTGTGATGGCTCGTGGTTGCTTTGATGACACAAAGGTATTTTCCTTTTTCTTTCTTCTTTTGAAGTTTTATTTTATGCATCCCAATCTCGTATGGTTACTATATTGGATGCCGTTCTTTAATCAGTCTACACAAAACATATCTTAGTTGAACTTTCCAGGGTGCTGTTCTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCCGCTGCTGCCAGCATTAAGTGGTATTTACAGAACTTAAGCTTTCTATAACTTTGATATGAAAAGTGTTATGTATATTAGAGCATATTAATCCATTATCCTAGCCTTATTTTCAGCATCGAATTGAAAACATTTATTGTATATTTTCCTTTTATATTTCGTTCAGTTGTATATAAGTTATACATCTCTATGTAATGAAATCATAAAGACCAATTTCATATCCTCTGTTTTATCTCTCTCTATCTTCTCTATTAATGTATAGTAAACTAACAAGAAGAGAGGAAAAGTGTCATTCTTATGATGCTAATATTTTCTTGAGAGAATTCTTGTTGGCTTGCATGCTCAGTTGTGACTAACGATCCAGCTTCTTTTGATGCACAGGATAGAATCAGAGAAGGGGGTTGTTGTGACCAATCACTCTTTAACGGTAAATTTGCTTTCTGAGACGGAAATGAATAGAATTCTATGGTTTAACCTTAAGCACTAGTCTCTATTTATTCAATGAAAATTTGGTCTCTTATTCAAGAAGAATAACTCAAGACAGGACTAAAGATTCTGTCCTATAGATGTGTGTTTAACTTTTGGAACTAGGCTTAAAACACTTGTTCCCCCTCTGACTTCGAACATCATTTTATTTGTCTTCGGAATGAATATGAATAAGAGTTTCATTTATTTCTGGAGTTCTTACTCCATCCTGATGGTTCAGTTGTAACTTTTAGGTCACATTTAATGGCTCATCTGATCATGTGAGCATTGATGCAACGAGGTTCCCTCCATTTCTCTTTTCTTTTCAAATATTTGTAACTGCTGATTGCAATATCGTATGTCCAAGTGGTACTTCGGATCATAGTTTTTATACCTTTTAAAAGAACATTTTATTGAGAATTGGCCACAAAAAGTTGGCTGCGTGTTTCTGATAAAATGCTGAATTATTTGGTGGCAGTGTTCAGAATTTAGAAATTATTGA

mRNA sequence

ATGGAAGACGACGGAGGCGAGAGATCGAGCTACGTGATCGGCCTGATCGAGAACAGAGCTAAAGAGGTTGGAGTTGCTGCGTTTGACTTGAGGTCAGCTTCACTTCATCTTTCTCAATATATAGAGACCAGTAGCTCCTACCAGAATACGAAAACTTTGCTGCATTTCTATGATCCAATGGTGATTCTTGTTCCTCCAAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCGGTTTTGGCAGACAGATTTTATACTACAGTGAAGAAGGTTGTGATGGCTCGTGGTTGCTTTGATGACACAAAGGGTGCTGTTCTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCCGCTGCTGCCAGCATTAAGTGGATAGAATCAGAGAAGGGGGTTGTTGTGACCAATCACTCTTTAACGTGTTCAGAATTTAGAAATTATTGA

Coding sequence (CDS)

ATGGAAGACGACGGAGGCGAGAGATCGAGCTACGTGATCGGCCTGATCGAGAACAGAGCTAAAGAGGTTGGAGTTGCTGCGTTTGACTTGAGGTCAGCTTCACTTCATCTTTCTCAATATATAGAGACCAGTAGCTCCTACCAGAATACGAAAACTTTGCTGCATTTCTATGATCCAATGGTGATTCTTGTTCCTCCAAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCGGTTTTGGCAGACAGATTTTATACTACAGTGAAGAAGGTTGTGATGGCTCGTGGTTGCTTTGATGACACAAAGGGTGCTGTTCTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGTTTGGAAACTTATTACAAACAGTACTATCTCTGCTTGGCTGCCGCTGCTGCCAGCATTAAGTGGATAGAATCAGAGAAGGGGGTTGTTGTGACCAATCACTCTTTAACGTGTTCAGAATTTAGAAATTATTGA

Protein sequence

MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLTCSEFRNY
Homology
[Close]
BLAST of Lcy02g015470 vs. ExPASy Swiss-Prot
Match: F4JP48 (DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.5e-70
Identity = 133/155 (85.81%), Postives = 145/155 (93.55%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDDGGERSS+V GLIENRAKEVG+AAFDLRSASLHLSQYIETSSSYQNTKTLL FYDP 
Sbjct: 1   MEDDGGERSSFVAGLIENRAKEVGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPS 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VI+VPPNKLA DGMVGVS L DR Y+TV+KVV ARGCFDDTKGAVLI+NLAA+EP ALGL
Sbjct: 61  VIIVPPNKLAADGMVGVSELVDRCYSTVRKVVFARGCFDDTKGAVLIQNLAAEEPLALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           +TYYKQ+YL LAAAAA+IKWIE+EKGV+VTNHSLT
Sbjct: 121 DTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLT 155

[Close]
BLAST of Lcy02g015470 vs. ExPASy Swiss-Prot
Match: Q99MT2 (MutS protein homolog 4 OS=Mus musculus OX=10090 GN=Msh4 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08
Identity = 42/148 (28.38%), Postives = 73/148 (49.32%), Query Frame = 0 

Query: 10  SYVIGLIENRA---KEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPP 69
           S ++ ++E R     E+G+A+ DL+S  + LSQ+ + +++Y    T L    P+ I++  
Sbjct: 177 SVIVAVVEGRGLARGEIGMASIDLKSPQIMLSQFAD-NTTYAKVITKLQVLSPLEIIMSN 236

Query: 70  NKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGLETYYKQ 129
                     +  L    +  V    + R  F++TKG   I+ L   E S++ +E   + 
Sbjct: 237 TACVVGNSTKLFTLITENFKNVNFTTVQRKYFNETKGLEYIEQLCIAEFSSVLMEV--QS 296

Query: 130 YYLCLAAAAASIKWIESEKGVVVTNHSL 155
            Y CLAAAAA +K++E  +  V    SL
Sbjct: 297 RYYCLAAAAALLKYVEFIQNSVYAPKSL 321

[Close]
BLAST of Lcy02g015470 vs. ExPASy Swiss-Prot
Match: O15457 (MutS protein homolog 4 OS=Homo sapiens OX=9606 GN=MSH4 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-08
Identity = 42/148 (28.38%), Postives = 72/148 (48.65%), Query Frame = 0 

Query: 10  SYVIGLIENRA---KEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPMVILVPP 69
           S ++ ++E R     E+G+A+ DL++  + LSQ+ + +++Y    T L    P+ I++  
Sbjct: 155 SVIVAVVEGRGLARGEIGMASIDLKNPQIILSQFAD-NTTYAKVITKLKILSPLEIIMSN 214

Query: 70  NKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGLETYYKQ 129
              A      +  L    +  V    + R  F++TKG   I+ L   E S + +E   K 
Sbjct: 215 TACAVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSK- 274

Query: 130 YYLCLAAAAASIKWIESEKGVVVTNHSL 155
            Y CLAA AA +K++E  +  V    SL
Sbjct: 275 -YYCLAAVAALLKYVEFIQNSVYAPKSL 299

[Close]
BLAST of Lcy02g015470 vs. ExPASy TrEMBL
Match: A0A6J1H107 (DNA mismatch repair protein MSH4 OS=Cucurbita moschata OX=3662 GN=LOC111459167 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.4e-78
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
Sbjct: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VILVPPNKLAPDGMVGVSVL D+FY TVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
Sbjct: 61  VILVPPNKLAPDGMVGVSVLVDKFYVTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           ETYYKQYYLCLAAAAASIKWIE+EKGV+VTNHSLT
Sbjct: 121 ETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLT 155

[Close]
BLAST of Lcy02g015470 vs. ExPASy TrEMBL
Match: A0A6J1K3Y6 (DNA mismatch repair protein MSH4 OS=Cucurbita maxima OX=3661 GN=LOC111491480 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.8e-78
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
Sbjct: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VILVPPNKLAPDGMVGVSVL DRFY +VKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
Sbjct: 61  VILVPPNKLAPDGMVGVSVLVDRFYVSVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           ETYYKQYYLCLAAAAASIKWIE+EKGV+VTNHSLT
Sbjct: 121 ETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLT 155

[Close]
BLAST of Lcy02g015470 vs. ExPASy TrEMBL
Match: A0A6J1DNB3 (DNA mismatch repair protein MSH4 OS=Momordica charantia OX=3673 GN=LOC111021986 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDD GERSSYVI LIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
Sbjct: 1   MEDDVGERSSYVIALIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VILVPPNKLAPDGMVGVSVLADRFY TVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
Sbjct: 61  VILVPPNKLAPDGMVGVSVLADRFYATVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           ETYYKQYYLCLAAAAASIKWIE+EKGV+VTNHSL+
Sbjct: 121 ETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLS 155

[Close]
BLAST of Lcy02g015470 vs. ExPASy TrEMBL
Match: A0A2P6P8I8 (Putative DNA mismatch repair protein MutS, type 1 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0203731 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.6e-74
Identity = 143/155 (92.26%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDDGGERSS+VIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLL FYDPM
Sbjct: 1   MEDDGGERSSFVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLQFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VI+V PNKLAPDGMVGVS LADRFY TVKKVVMARGCFDDT GAVLIKNLAAKEPSALGL
Sbjct: 61  VIIVSPNKLAPDGMVGVSELADRFYATVKKVVMARGCFDDTTGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           +TYYKQYYLCLAAAAA+IKWIE+EKGV+VTNHSL+
Sbjct: 121 DTYYKQYYLCLAAAAATIKWIEAEKGVIVTNHSLS 155

[Close]
BLAST of Lcy02g015470 vs. ExPASy TrEMBL
Match: A0A2R6QNP9 (DNA mismatch repair protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15819 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.5e-73
Identity = 136/155 (87.74%), Postives = 152/155 (98.06%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDD GERS++VIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDP+
Sbjct: 1   MEDDAGERSNFVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPL 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VI+VPPNKLAPDGMVGVS+L DRFY+++KKV+MARGCFDDTKGAVL+KNLAAKEPSALGL
Sbjct: 61  VIIVPPNKLAPDGMVGVSILVDRFYSSIKKVIMARGCFDDTKGAVLVKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           +TYYKQYYLCLAAA+A+IKWIE+EKGV +TNHSL+
Sbjct: 121 DTYYKQYYLCLAAASATIKWIEAEKGVSITNHSLS 155

[Close]
BLAST of Lcy02g015470 vs. NCBI nr
Match: XP_023521478.1 (DNA mismatch repair protein MSH4-like [Cucurbita pepo subsp. pepo] >XP_023532701.1 DNA mismatch repair protein MSH4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 4.1e-78
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
Sbjct: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VILVPPNKLAPDGMVGVSVL DRFY TVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
Sbjct: 61  VILVPPNKLAPDGMVGVSVLVDRFYVTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           ETYYKQYYLCLAAAAASIKWIE+EKGV+VTNHSLT
Sbjct: 121 ETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLT 155

[Close]
BLAST of Lcy02g015470 vs. NCBI nr
Match: XP_022957703.1 (DNA mismatch repair protein MSH4 [Cucurbita moschata])

HSP 1 Score: 300.4 bits (768), Expect = 9.1e-78
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
Sbjct: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VILVPPNKLAPDGMVGVSVL D+FY TVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
Sbjct: 61  VILVPPNKLAPDGMVGVSVLVDKFYVTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           ETYYKQYYLCLAAAAASIKWIE+EKGV+VTNHSLT
Sbjct: 121 ETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLT 155

[Close]
BLAST of Lcy02g015470 vs. NCBI nr
Match: XP_022996171.1 (DNA mismatch repair protein MSH4 [Cucurbita maxima])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
Sbjct: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VILVPPNKLAPDGMVGVSVL DRFY +VKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
Sbjct: 61  VILVPPNKLAPDGMVGVSVLVDRFYVSVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           ETYYKQYYLCLAAAAASIKWIE+EKGV+VTNHSLT
Sbjct: 121 ETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLT 155

[Close]
BLAST of Lcy02g015470 vs. NCBI nr
Match: XP_022154824.1 (DNA mismatch repair protein MSH4 [Momordica charantia])

HSP 1 Score: 295.8 bits (756), Expect = 2.2e-76
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDD GERSSYVI LIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
Sbjct: 1   MEDDVGERSSYVIALIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VILVPPNKLAPDGMVGVSVLADRFY TVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
Sbjct: 61  VILVPPNKLAPDGMVGVSVLADRFYATVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           ETYYKQYYLCLAAAAASIKWIE+EKGV+VTNHSL+
Sbjct: 121 ETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLS 155

[Close]
BLAST of Lcy02g015470 vs. NCBI nr
Match: XP_038907062.1 (DNA mismatch repair protein MSH4 isoform X1 [Benincasa hispida])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 146/154 (94.81%), Postives = 151/154 (98.05%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDD GERSS+VIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
Sbjct: 1   MEDDAGERSSFVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VILVPPNKLAPDGMVGVSVLADRF+ TVKKVVMAR CFDDTKGAVLIKNLAAKEPSALGL
Sbjct: 61  VILVPPNKLAPDGMVGVSVLADRFFATVKKVVMARACFDDTKGAVLIKNLAAKEPSALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSL 155
           ETYYKQYYLCLAAAAASIKWIE+EKG++VTNHSL
Sbjct: 121 ETYYKQYYLCLAAAAASIKWIEAEKGIIVTNHSL 154

[Close]
BLAST of Lcy02g015470 vs. TAIR 10
Match: AT4G17380.1 (MUTS-like protein 4 )

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-71
Identity = 133/155 (85.81%), Postives = 145/155 (93.55%), Query Frame = 0 

Query: 1   MEDDGGERSSYVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM 60
           MEDDGGERSS+V GLIENRAKEVG+AAFDLRSASLHLSQYIETSSSYQNTKTLL FYDP 
Sbjct: 1   MEDDGGERSSFVAGLIENRAKEVGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPS 60

Query: 61  VILVPPNKLAPDGMVGVSVLADRFYTTVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL 120
           VI+VPPNKLA DGMVGVS L DR Y+TV+KVV ARGCFDDTKGAVLI+NLAA+EP ALGL
Sbjct: 61  VIIVPPNKLAADGMVGVSELVDRCYSTVRKVVFARGCFDDTKGAVLIQNLAAEEPLALGL 120

Query: 121 ETYYKQYYLCLAAAAASIKWIESEKGVVVTNHSLT 156
           +TYYKQ+YL LAAAAA+IKWIE+EKGV+VTNHSLT
Sbjct: 121 DTYYKQHYLSLAAAAATIKWIEAEKGVIVTNHSLT 155

The following BLAST results are available for this feature:
BLAST of Lcy02g015470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JP482.5e-7085.81DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV... [more]
Q99MT23.5e-0828.38MutS protein homolog 4 OS=Mus musculus OX=10090 GN=Msh4 PE=2 SV=1[more]
O154577.9e-0828.38MutS protein homolog 4 OS=Homo sapiens OX=9606 GN=MSH4 PE=1 SV=2[more]
BLAST of Lcy02g015470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H1074.4e-7896.77DNA mismatch repair protein MSH4 OS=Cucurbita moschata OX=3662 GN=LOC111459167 P... [more]
A0A6J1K3Y65.8e-7896.77DNA mismatch repair protein MSH4 OS=Cucurbita maxima OX=3661 GN=LOC111491480 PE=... [more]
A0A6J1DNB31.1e-7696.13DNA mismatch repair protein MSH4 OS=Momordica charantia OX=3673 GN=LOC111021986 ... [more]
A0A2P6P8I88.6e-7492.26Putative DNA mismatch repair protein MutS, type 1 OS=Rosa chinensis OX=74649 GN=... [more]
A0A2R6QNP92.5e-7387.74DNA mismatch repair protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=... [more]
BLAST of Lcy02g015470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023521478.14.1e-7897.42DNA mismatch repair protein MSH4-like [Cucurbita pepo subsp. pepo] >XP_023532701... [more]
XP_022957703.19.1e-7896.77DNA mismatch repair protein MSH4 [Cucurbita moschata][more]
XP_022996171.11.2e-7796.77DNA mismatch repair protein MSH4 [Cucurbita maxima][more]
XP_022154824.12.2e-7696.13DNA mismatch repair protein MSH4 [Momordica charantia][more]
XP_038907062.11.5e-7594.81DNA mismatch repair protein MSH4 isoform X1 [Benincasa hispida][more]
BLAST of Lcy02g015470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G17380.11.8e-7185.81MUTS-like protein 4 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036678MutS, connector domain superfamilyGENE3D3.30.420.110MutS, connector domaincoord: 2..156
e-value: 3.6E-7
score: 32.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g015470.1Lcy02g015470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007129 homologous chromosome pairing at meiosis
biological_process GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination
biological_process GO:0000712 resolution of meiotic recombination intermediates
biological_process GO:0006298 mismatch repair
cellular_component GO:0043073 germ cell nucleus
cellular_component GO:0000795 synaptonemal complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0030983 mismatched DNA binding