Lcy02g014030 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g014030
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr02: 39944457 .. 39944725 (-)
RNA-Seq ExpressionLcy02g014030
SyntenyLcy02g014030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACCTCCTCCCCTTTCCTTCTCTTCTCTTCTCTTCTTCAACACTAATTAATCTTATTATTTATGGACGTCTTCATCCCCGAAGATTACGTCCGTCGCCGTCATATCGAGAAAAAGGCCGCCGCTGCCGCCAAGGACCGGCCGCAGGACGCCGCCACTGCTTGCCGGAGGACCACCGAGAAGGACAAGCCCACACCCGCCGGGAAATCCGGATTCCGGTTCGCCTCCACCGCCGCCGACAATGTGGTCTTCACTTGCTTCTCTGCCTGA

mRNA sequence

TTACCTCCTCCCCTTTCCTTCTCTTCTCTTCTCTTCTTCAACACTAATTAATCTTATTATTTATGGACGTCTTCATCCCCGAAGATTACGTCCGTCGCCGTCATATCGAGAAAAAGGCCGCCGCTGCCGCCAAGGACCGGCCGCAGGACGCCGCCACTGCTTGCCGGAGGACCACCGAGAAGGACAAGCCCACACCCGCCGGGAAATCCGGATTCCGGTTCGCCTCCACCGCCGCCGACAATGTGGTCTTCACTTGCTTCTCTGCCTGA

Coding sequence (CDS)

ATGGACGTCTTCATCCCCGAAGATTACGTCCGTCGCCGTCATATCGAGAAAAAGGCCGCCGCTGCCGCCAAGGACCGGCCGCAGGACGCCGCCACTGCTTGCCGGAGGACCACCGAGAAGGACAAGCCCACACCCGCCGGGAAATCCGGATTCCGGTTCGCCTCCACCGCCGCCGACAATGTGGTCTTCACTTGCTTCTCTGCCTGA

Protein sequence

MDVFIPEDYVRRRHIEKKAAAAAKDRPQDAATACRRTTEKDKPTPAGKSGFRFASTAADNVVFTCFSA
Homology
BLAST of Lcy02g014030 vs. ExPASy TrEMBL
Match: A0A0A0KKA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.5e-08
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  MDVFIPEDYVRRRHIEKKAAAAA--KDRPQDAATACRRTTEKDKPTPAGKSGFRFASTAA 60
          MDVFIP+DYV RR IEKK AA A  K R    A    R ++K+K  PA    FRF +T A
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFTCFSA 69
          DNVVF CFSA
Sbjct: 61 DNVVFNCFSA 70

BLAST of Lcy02g014030 vs. ExPASy TrEMBL
Match: A0A067G992 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042803mg PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 1  MDVFIPEDYVRRRHIEKKAAAAAKDRPQDAATACRRTTEKDKPTP---AGKSGFRFASTA 60
          MDVFIPE+YV RR  EKKAAA A+      + + +R+ EK  P P      + F  +   
Sbjct: 1  MDVFIPEEYVARRRTEKKAAAMARKGSNTVSESGKRSMEKSGPPPFRRLDNNEFLVSGGL 60

Query: 61 ADNVVFTCFSA 69
          ++NVVF+CFSA
Sbjct: 61 SENVVFSCFSA 71

BLAST of Lcy02g014030 vs. ExPASy TrEMBL
Match: V4VJD7 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023197mg PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 1  MDVFIPEDYVRRRHIEKKAAAAAKDRPQDAATACRRTTEKDKPTP---AGKSGFRFASTA 60
          MDVFIPE+YV RR  EKKAAA A+      + + +R+ EK  P P      + F  +   
Sbjct: 1  MDVFIPEEYVARRRTEKKAAAMARKGSNTVSESGKRSMEKSGPPPFRRLDNNEFLVSGGL 60

Query: 61 ADNVVFTCFSA 69
          ++NVVF+CFSA
Sbjct: 61 SENVVFSCFSA 71

BLAST of Lcy02g014030 vs. NCBI nr
Match: KAE8647863.1 (hypothetical protein Csa_000530 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1   MDVFIPEDYVRRRHIEKKAAAAA--KDRPQDAATACRRTTEKDKPTPAGKSGFRFASTAA 60
           MDVFIP+DYV RR IEKK AA A  K R    A    R ++K+K  PA    FRF +T A
Sbjct: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 130

Query: 61  DNVVFTCFSA 69
           DNVVF CFSA
Sbjct: 131 DNVVFNCFSA 140

BLAST of Lcy02g014030 vs. NCBI nr
Match: KAG6606110.1 (hypothetical protein SDJN03_03427, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 1  MDVFIPEDYVRRRHIEKKAAAAAKDRPQDAATACRRTTEKDKPTPAGKSGFR 53
          MDVFIPEDYV RR IEK+AAA  +        A R T+EK+K   AGK+GFR
Sbjct: 1  MDVFIPEDYVNRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFR 52

BLAST of Lcy02g014030 vs. NCBI nr
Match: ESR52799.1 (hypothetical protein CICLE_v10023197mg [Citrus clementina] >KDO76203.1 hypothetical protein CISIN_1g042803mg [Citrus sinensis])

HSP 1 Score: 54.3 bits (129), Expect = 4.8e-04
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 1  MDVFIPEDYVRRRHIEKKAAAAAKDRPQDAATACRRTTEKDKPTP---AGKSGFRFASTA 60
          MDVFIPE+YV RR  EKKAAA A+      + + +R+ EK  P P      + F  +   
Sbjct: 1  MDVFIPEEYVARRRTEKKAAAMARKGSNTVSESGKRSMEKSGPPPFRRLDNNEFLVSGGL 60

Query: 61 ADNVVFTCFSA 69
          ++NVVF+CFSA
Sbjct: 61 SENVVFSCFSA 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KKA74.5e-0857.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1[more]
A0A067G9922.3e-0445.07Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042803mg PE=4 SV=1[more]
V4VJD72.3e-0445.07Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023197mg PE=4 ... [more]
Match NameE-valueIdentityDescription
KAE8647863.19.3e-0857.14hypothetical protein Csa_000530 [Cucumis sativus][more]
KAG6606110.13.7e-0457.69hypothetical protein SDJN03_03427, partial [Cucurbita argyrosperma subsp. sorori... [more]
ESR52799.14.8e-0445.07hypothetical protein CICLE_v10023197mg [Citrus clementina] >KDO76203.1 hypotheti... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g014030.1Lcy02g014030.1mRNA