Lcy02g013190 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g013190
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Cox19-like CHCH family protein
Location	Chr02: 38688950 .. 38690651 (-)
RNA-Seq Expression	Lcy02g013190
Synteny	Lcy02g013190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTTCTACTACCCAAGAAGCTACATCCTTGCCTTCGGTAACTGGGAATGGAACGACCATCTCCCTTTCACACAGTGCTTCGACTCCTCTCGCCTCGCCGCCTTCTCCCACGCCCAAGACCTCTACGTCGCCGGCGACCTCTACCAGATCTCGTCCGGAACGGGGAGGAGGAAACCCTCCTCCCAGTTCGTTCCACTTAAAAAAAAAAAAAGAAAAAAAAAGTGAGGTGGGAAAGAAGAAGAGAAGAAAAAAAAGAAAAAGAAGAAGAAAAAAAAAAACTGTCGGCAGCCGCTGGTGGCCGACGACTGATCGTCGGCGCGGTAGGTTGGTGGTGAAGATGGTGTTGAAGAAGAAAGAGAGTGGTGGTGGTGAAGGGTTGAAGAAGATGAAGGTAAAAGAATTAAAAGTATATTAAAATATATATTTTATTATTTTTATTAATTTTTATTTTAAAAAATGAAAAAATAATTTTTTTAATAAAAAAAATAAATGTCACGTCAGGGATCTGTTAACTTTTAACGAAAAAATGGATGGAGGGATCAAAATGCTACTAAATGCAAACCTCAGGGACTAAAATGTTGAGTTTGAAATCTCAGGGACCAAAACGAAACCTAAGCCAAACCTCAGAGACCAAAAGTATATTTTTTCCAAAAAAAAAAAAAGTTAAGCTATTGGGCCCATAAAAGATATGGGCCCATAGAGTTTTGTCCGACACATCGTCAAACATGTCGCGACGCATCGGGTACTGAAATTGATGTTACTGGACGTACCCATGCTGGAGCCACGTGGGCCCATCTTGGGCCAGTTTCTGATTCAGGCCCTATAGCTCAGGCCCACTTCAAATATATATATATATATATATATATTTCCTGAAAAGGCTGCAATTAAAGTCAAACTTTTGACCAACTTAGCTTTTGAAGAAGAAAACCACCGTGTGGGCTCGCACGTGCGAACCCGTTCCCTAGAAAATTTCAAGCACGAACTTGGAATTTGCGAATCCCTCTTTTTCCCCTTTAGCTGCGGCTGTGGGTTTCTTTTTCGAAATGCGCCCTTTCTTCGGTTTCGTCCCATTGTTTTGCGATTCCTTGTTAAACAAGCTGCAGTTCACTGGTTTGGAAATCCACTTGCAGTTCCGCCATGGATGAAGCTCAAGCTCGATCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTGACGGAGTCGCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGCAAGGTATTCATTCGCTCTCTTTACTTTGCCCTAAGCATTCGTGTCCCTTTCGATGTTTGATGAAATGAAACTCAATTTGTTGCTGTTTTTGGAATTTCTCGAATTAGATCGCCTTGCACTCTGATTTAGATTTTTTCGAGTAATCGTCGAATTGTGATTCTGAAATATTGCAATCTCTTGGTTCAATTTAATGAAGGATTAGGTTTGAAATGATCATCAGCTGGTTTGGAATGATATGCCTTCACATTTCACATACATATTTGTATGAGCAACAAAATGTAGAAAAGTTATATGTTCCAATGCTCTTTTCTTTGGTACTTTTCCTTGAATTTGTTCCTTCTTCCTTCGACAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAAGAAGCAAAACCAAGTAAGAAGAGCCCTTGA

mRNA sequence

ATGGAGGATTTCTACTACCCAAGAAGCTACATCCTTGCCTTCGGTAACTGGGAATGGAACGACCATCTCCCTTTCACACAGTGCTTCGACTCCTCTCGCCTCGCCGCCTTCTCCCACGCCCAAGACCTCTACGTCGCCGGCGACCTCTACCAGATCTCTTCCGCCATGGATGAAGCTCAAGCTCGATCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTGACGGAGTCGCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAAGAAGCAAAACCAAGTAAGAAGAGCCCTTGA

Coding sequence (CDS)

ATGGAGGATTTCTACTACCCAAGAAGCTACATCCTTGCCTTCGGTAACTGGGAATGGAACGACCATCTCCCTTTCACACAGTGCTTCGACTCCTCTCGCCTCGCCGCCTTCTCCCACGCCCAAGACCTCTACGTCGCCGGCGACCTCTACCAGATCTCTTCCGCCATGGATGAAGCTCAAGCTCGATCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTGACGGAGTCGCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAAGAAGCAAAACCAAGTAAGAAGAGCCCTTGA

Protein sequence

MEDFYYPRSYILAFGNWEWNDHLPFTQCFDSSRLAAFSHAQDLYVAGDLYQISSAMDEAQARSQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEEEAKPSKKSP

Homology

[Close]

BLAST of Lcy02g013190 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 64  QPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEEEAKP 120
           QPQPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 5   QPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

[Close]

BLAST of Lcy02g013190 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.2e-20
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 64  QPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEEEAKPSKK 123
           QPQPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLA+EE+ KP  K
Sbjct: 5   QPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKPIVK 63

[Close]

BLAST of Lcy02g013190 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.7e-17
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 56  MDEAQARSQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEE 115
           MDEA+AR    PVCAQEALDLLNCVT+SPFDQEKC +LL+SLRECVL+KKVKKFSLAD+E
Sbjct: 1   MDEARAR----PVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

[Close]

BLAST of Lcy02g013190 vs. ExPASy TrEMBL
Match: A0A5N6R867 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012852 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 56  MDEAQARSQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAD-- 115
           MD+A   +Q QPVCAQEALDLLNCV +SP+DQ+KC RLL SLRECVL+KKVKKFSLAD  
Sbjct: 1   MDQA-GSAQSQPVCAQEALDLLNCVAQSPYDQDKCLRLLQSLRECVLNKKVKKFSLADQR 60

Query: 116 EEEAKPSKK 123
           ++EAKP+ K
Sbjct: 61  QQEAKPASK 68

[Close]

BLAST of Lcy02g013190 vs. ExPASy TrEMBL
Match: A0A803PNU7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 63  SQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEEEAKPSKK 122
           S  QPVCAQEALDLLNCVT+SP+DQ+KC RLL+SLR+CVL+KKVKKFS+AD +EAKPS K
Sbjct: 9   SDAQPVCAQEALDLLNCVTQSPYDQDKCIRLLNSLRDCVLTKKVKKFSIAD-QEAKPSDK 67

[Close]

BLAST of Lcy02g013190 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-20
Identity = 58/67 (86.57%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 56  MDEAQARSQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEE 115
           MD+AQA    QPVCAQEALDLLNCVT+SPFDQEKCYRLLHSLRECVLSKKVKKFSLADEE
Sbjct: 1   MDDAQA----QPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEE 60

Query: 116 EAKPSKK 123
            AK S K
Sbjct: 61  RAKRSGK 63

[Close]

BLAST of Lcy02g013190 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-20
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 64  QPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEEEAKP 120
           QPQPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 5   QPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

[Close]

BLAST of Lcy02g013190 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-20
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 64  QPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEEEAKPSKK 123
           QPQPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLA+EE+ KP  K
Sbjct: 5   QPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKPIVK 63

[Close]

BLAST of Lcy02g013190 vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 56  MDEAQARSQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEE 115
           MDEA+AR    PVCAQEALDLLNCVT+SPFDQEKC +LL+SLRECVL+KKVKKFSLAD+E
Sbjct: 1   MDEARAR----PVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

[Close]

BLAST of Lcy02g013190 vs. NCBI nr
Match: KAE8056054.1 (hypothetical protein FH972_012852 [Carpinus fangiana])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-16
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 56  MDEAQARSQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAD-- 115
           MD+A   +Q QPVCAQEALDLLNCV +SP+DQ+KC RLL SLRECVL+KKVKKFSLAD  
Sbjct: 1   MDQA-GSAQSQPVCAQEALDLLNCVAQSPYDQDKCLRLLQSLRECVLNKKVKKFSLADQR 60

Query: 116 EEEAKPSKK 123
           ++EAKP+ K
Sbjct: 61  QQEAKPASK 68

[Close]

BLAST of Lcy02g013190 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 81.6 bits (200), Expect = 4.7e-16
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 62  RSQPQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA----DEEEA 121
           +   QP+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+     D E A
Sbjct: 49  KQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDHDSEGA 108

Query: 122 KPSKKSP 125
             + K P
Sbjct: 109 ASATKRP 115

[Close]

BLAST of Lcy02g013190 vs. TAIR 10
Match: AT5G48500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 5  YYPRSYILAFGNWEWNDHLPFTQCFDSS--------RLAAFSHAQDLYVAGDLY 51
          Y  R ++ AFG+W+WND +PFTQCF+++          A++   +DLY+AGDLY
Sbjct: 10 YCRRGHVPAFGSWDWNDAVPFTQCFETATTQQPAFLHYASYPQDRDLYLAGDLY 63

The following BLAST results are available for this feature:

BLAST of Lcy02g013190 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g013190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQS7	1.1e-20	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1	[more]
A0A5D3C4E2	4.2e-20	88.14	Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A7J7CJI7	5.7e-17	81.67	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ...	[more]
A0A5N6R867	1.6e-16	72.46	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012852 PE=4 SV=1	[more]
A0A803PNU7	3.7e-16	78.33	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lcy02g013190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606053.1	1.7e-20	86.57	hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN50036.1	2.3e-20	92.86	hypothetical protein Csa_000619 [Cucumis sativus]	[more]
KAA0042698.1	8.7e-20	88.14	Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like...	[more]
KAF5734209.1	1.2e-16	81.67	hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii]	[more]
KAE8056054.1	3.4e-16	72.46	hypothetical protein FH972_012852 [Carpinus fangiana]	[more]

BLAST of Lcy02g013190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23760.1	4.7e-16	64.18	Cox19-like CHCH family protein	[more]
AT5G48500.1	1.3e-08	44.44	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.1130	CytochromE C oxidase copper chaperone	coord: 63..123 e-value: 2.2E-5 score: 26.3
None	No IPR available	PANTHER	PTHR37750	COX19-LIKE CHCH FAMILY PROTEIN	coord: 40..121
None	No IPR available	PROSITE	PS51808	CHCH	coord: 66..108 score: 11.009933
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 64..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g013190.1	Lcy02g013190.1	mRNA