Lcy02g013020 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g013020
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Trehalase 1
Location	Chr02: 38482831 .. 38483926 (-)
RNA-Seq Expression	Lcy02g013020
Synteny	Lcy02g013020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATAATGATTCAATTTCAGACTCTCCTTTCATTTTTTGGTTGAGCCCTAGCTTGAGGTTGAACCCTCGTTTTCATCTTCAAATTCCTCTCGCAAATCACTTACAGCAACTCCAATTTTCGAATTCCATTCTTCAATCGGCAATCGGAAGCCCGTCGTGAAGGGCTCTGCACAGATCGGATGGAGAATGGCAACAATAACGCCCTGAGTATCATTTCACGGGAGAAGCTCGACCAAGTTGCGGCCTGGGTGGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCCTGCGTCAACATTGCCACCAATGATCTTGATGACGACGAAGACGACGACGACCAGCTTCTCTTGTCCGATCAGCCGCGTTCCGATCAATTTGGACGACCTGACCAACAAGACGGGTTTGTCGATCTTCCTGTCTGATCAATCATCCAAAACTATAGATCTTTTCCTTTTCTTAATTTACGTAATTGTGGGTTTCTTTTCCTCTTCCGCTATTGCTGGTGTTATGTTGAATTTGTTCCTTGTATGTGTTCATGATATGCAATGGTAATGTGATAGCCTTCTGTGCTGCCCTAAATGACGGATTATTTTGATTTCAATTTGTAATCATCCTAAAAATCGAGATTGATGTGTTTATATATGTATTTCTGTACGTTGCTTCATTCATTAGGATATTATTAATATTACTGCACAATTCATAGCAATTGTGCGCGAACAAACATTGTTGCATTCTTTAGTTGGATTTATAGCCTTGTGGGGCTTTTGTTGTTTACTGGTTGGGGAGTTTTGATTCTCTATCTAAAAGTCAAGCAATTCGTTGATGCTTTTTGAAGGGGGGAAAACCTAAGGATCTGGGGAGGATTGTGGAGTTTCTTAGTGTTTGATAGCTTAGTCACTTTGCTCCCTGATGACGATGGTTTGGAGCTTTGTGGTCATTGCTGAACTTGATGTAGCTTGTTATGAATTTCTCTATGATTTTTCTCATTTTCCAATCTCTTCTGCAGTTGTAAAATTATGTGGTTCTATTTGTTCTGGCTGATATATATTATGTTGAAAGATAATGGAAACAATGTTTCATGCA

mRNA sequence

CGAATAATGATTCAATTTCAGACTCTCCTTTCATTTTTTGGTTGAGCCCTAGCTTGAGGTTGAACCCTCGTTTTCATCTTCAAATTCCTCTCGCAAATCACTTACAGCAACTCCAATTTTCGAATTCCATTCTTCAATCGGCAATCGGAAGCCCGTCGTGAAGGGCTCTGCACAGATCGGATGGAGAATGGCAACAATAACGCCCTGAGTATCATTTCACGGGAGAAGCTCGACCAAGTTGCGGCCTGGGTGGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCCTGCGTCAACATTGCCACCAATGATCTTGATGACGACGAAGACGACGACGACCAGCTTCTCTTGTCCGATCAGCCGCGTTCCGATCAATTTGGACGACCTGACCAACAAGACGGGTTTGTCGATCTTCCTGTCTGATCAATCATCCAAAACTATAGATCTTTTCCTTTTCTTAATTTACGTAATTGTGGGTTTCTTTTCCTCTTCCGCTATTGCTGGTGTTATGTTGAATTTGTTCCTTGTATGTGTTCATGATATGCAATGGTAATGTGATAGCCTTCTGTGCTGCCCTAAATGACGGATTATTTTGATTTCAATTTGTAATCATCCTAAAAATCGAGATTGATGTGTTTATATATGTATTTCTGTACGTTGCTTCATTCATTAGGATATTATTAATATTACTGCACAATTCATAGCAATTGTGCGCGAACAAACATTGTTGCATTCTTTAGTTGGATTTATAGCCTTGTGGGGCTTTTGTTGTTTACTGGTTGGGGAGTTTTGATTCTCTATCTAAAAGTCAAGCAATTCGTTGATGCTTTTTGAAGGGGGGAAAACCTAAGGATCTGGGGAGGATTGTGGAGTTTCTTAGTGTTTGATAGCTTAGTCACTTTGCTCCCTGATGACGATGGTTTGGAGCTTTGTGGTCATTGCTGAACTTGATGTAGCTTGTTATGAATTTCTCTATGATTTTTCTCATTTTCCAATCTCTTCTGCAGTTGTAAAATTATGTGGTTCTATTTGTTCTGGCTGATATATATTATGTTGAAAGATAATGGAAACAATGTTTCATGCA

Coding sequence (CDS)

ATGGAGAATGGCAACAATAACGCCCTGAGTATCATTTCACGGGAGAAGCTCGACCAAGTTGCGGCCTGGGTGGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCCTGCGTCAACATTGCCACCAATGATCTTGATGACGACGAAGACGACGACGACCAGCTTCTCTTGTCCGATCAGCCGCGTTCCGATCAATTTGGACGACCTGACCAACAAGACGGGTTTGTCGATCTTCCTGTCTGA

Protein sequence

MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQLLLSDQPRSDQFGRPDQQDGFVDLPV

Homology

[Close]

BLAST of Lcy02g013020 vs. ExPASy TrEMBL
Match: A0A0A0KK32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150380 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQLL 60
          MEN +NNALSI+SREKLDQVAAWVAATMSSAFFSSLERFSCV++ATN+LDDD+DDDD LL
Sbjct: 1  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVHVATNELDDDDDDDDHLL 60

Query: 61 LSDQPRSDQFGRPDQQDGFVDLPV 85
          LS QP SDQ   PDQ DGFVDLPV
Sbjct: 61 LSTQPLSDQILLPDQHDGFVDLPV 84

[Close]

BLAST of Lcy02g013020 vs. ExPASy TrEMBL
Match: A0A5A7THD9 (Trehalase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001870 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQLL 60
          MEN +NNALSI+SREKLDQVAAWVAATMSSAFFSSLERFSCVN+ATNDLDDD+DDDD LL
Sbjct: 1  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDD-LL 60

Query: 61 LSDQPRSDQFGRPDQQDGFVDLPV 85
          LS QP SDQ   PDQ DGFVDLPV
Sbjct: 61 LSTQPLSDQILPPDQHDGFVDLPV 83

[Close]

BLAST of Lcy02g013020 vs. ExPASy TrEMBL
Match: A0A1S3AUH1 (uncharacterized protein LOC103482822 OS=Cucumis melo OX=3656 GN=LOC103482822 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQLL 60
          MEN +NNALSI+SREKLDQVAAWVAATMSSAFFSSLERFSCVN+ATNDLDDD+DDDD LL
Sbjct: 1  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDD-LL 60

Query: 61 LSDQPRSDQFGRPDQQDGFVDLPV 85
          LS QP SDQ   PDQ DGFVDLPV
Sbjct: 61 LSTQPLSDQILPPDQHDGFVDLPV 83

[Close]

BLAST of Lcy02g013020 vs. ExPASy TrEMBL
Match: M5WNZ8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G126200 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.5e-13
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDD 57
          MENGNN   SIISREKLDQVA+WV+AT+S+AFFSSLERFSCVN+AT D DD+++D+
Sbjct: 1  MENGNN---SIISREKLDQVASWVSATVSTAFFSSLERFSCVNLATTDFDDEDEDE 53

[Close]

BLAST of Lcy02g013020 vs. ExPASy TrEMBL
Match: A0A6J5UUI8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS33053 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.5e-13
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDD 57
          MENGNN   SIISREKLDQVA+WV+AT+S+AFFSSLERFSCVN+AT D DD+++D+
Sbjct: 1  MENGNN---SIISREKLDQVASWVSATVSTAFFSSLERFSCVNLATTDFDDEDEDE 53

[Close]

BLAST of Lcy02g013020 vs. NCBI nr
Match: KAG6605572.1 (hypothetical protein SDJN03_02889, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035486.1 hypothetical protein SDJN02_02282, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 6.9e-29
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQLL 60
          MEN NNN LSI+SREKLDQVAAWVAATMSSAFFSSLERFSCVNIATND DDD+DDD+Q L
Sbjct: 1  MENTNNNVLSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDPDDDDDDDNQFL 60

Query: 61 LSDQPRSDQFGRPDQQDGFVDLPV 85
           SDQ RSDQF   DQQDGFVDLPV
Sbjct: 61 ASDQLRSDQFPSSDQQDGFVDLPV 84

[Close]

BLAST of Lcy02g013020 vs. NCBI nr
Match: XP_008437391.1 (PREDICTED: uncharacterized protein LOC103482822 [Cucumis melo] >KAA0042683.1 Trehalase 1 [Cucumis melo var. makuwa] >TYK06086.1 Trehalase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 4.5e-28
Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQLL 60
          MEN +NNALSI+SREKLDQVAAWVAATMSSAFFSSLERFSCVN+ATNDLDDD+DDDD LL
Sbjct: 1  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDD-LL 60

Query: 61 LSDQPRSDQFGRPDQQDGFVDLPV 85
          LS QP SDQ   PDQ DGFVDLPV
Sbjct: 61 LSTQPLSDQILPPDQHDGFVDLPV 83

[Close]

BLAST of Lcy02g013020 vs. NCBI nr
Match: KAE8647837.1 (hypothetical protein Csa_000196 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 6.1e-25
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQLL 60
          MEN +NNALSI+SREKLDQVAAWVAATMSSAFFSSLERFSCV++ATN+LDDD+DDDD LL
Sbjct: 1  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVHVATNELDDDDDDDDHLL 60

Query: 61 LSDQPRSDQFGRPDQQDGF 80
          LS QP SDQ   PDQ DG+
Sbjct: 61 LSTQPLSDQILLPDQHDGY 79

[Close]

BLAST of Lcy02g013020 vs. NCBI nr
Match: ONI07532.1 (hypothetical protein PRUPE_5G126200 [Prunus persica] >CAB4280240.1 unnamed protein product [Prunus armeniaca] >CAB4310654.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MENGNNNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDD 57
          MENGNN   SIISREKLDQVA+WV+AT+S+AFFSSLERFSCVN+AT D DD+++D+
Sbjct: 1  MENGNN---SIISREKLDQVASWVSATVSTAFFSSLERFSCVNLATTDFDDEDEDE 53

[Close]

BLAST of Lcy02g013020 vs. NCBI nr
Match: XP_011465366.1 (PREDICTED: uncharacterized protein LOC105351736 [Fragaria vesca subsp. vesca])

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1  MENGN-NNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQL 60
          ME+GN NN  +IISRE +DQVA WV+AT+SSAFFSSLERFSCVN+AT D DDDE +   L
Sbjct: 1  MEDGNANNNTAIISRETIDQVAGWVSATVSSAFFSSLERFSCVNVATEDDDDDEAEHHPL 60

Query: 61 LLSDQPRSDQ 70
           L++    DQ
Sbjct: 61 ALTNLAHPDQ 70

[Close]

BLAST of Lcy02g013020 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-09
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 6  NNALSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDD 58
          +N  +  S EK+D  A+W++AT+ SAFF+SLER +CVN++T+  DDD+DDD+
Sbjct: 9  SNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDE 60

[Close]

BLAST of Lcy02g013020 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-09
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 9  LSIISREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDDEDDDDQ---LLLSDQP 68
          LS  S EKLDQ A+WV+ T+ SAFF+SLER SCVN++T+D DDDE ++     L LS  P
Sbjct: 17 LSTASLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSD-DDDEGEESHNRPLALSAAP 76

The following BLAST results are available for this feature:

BLAST of Lcy02g013020 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g013020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK32	1.3e-28	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150380 PE=4 SV=1	[more]
A0A5A7THD9	2.2e-28	85.71	Trehalase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001870 P...	[more]
A0A1S3AUH1	2.2e-28	85.71	uncharacterized protein LOC103482822 OS=Cucumis melo OX=3656 GN=LOC103482822 PE=...	[more]
M5WNZ8	7.5e-13	75.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G126200 PE=4 SV=1	[more]
A0A6J5UUI8	7.5e-13	75.00	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS33053 PE=4 S...	[more]

BLAST of Lcy02g013020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605572.1	6.9e-29	85.71	hypothetical protein SDJN03_02889, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008437391.1	4.5e-28	85.71	PREDICTED: uncharacterized protein LOC103482822 [Cucumis melo] >KAA0042683.1 Tre...	[more]
KAE8647837.1	6.1e-25	81.01	hypothetical protein Csa_000196 [Cucumis sativus]	[more]
ONI07532.1	1.5e-12	75.00	hypothetical protein PRUPE_5G126200 [Prunus persica] >CAB4280240.1 unnamed prote...	[more]
XP_011465366.1	1.0e-11	64.29	PREDICTED: uncharacterized protein LOC105351736 [Fragaria vesca subsp. vesca]	[more]

BLAST of Lcy02g013020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24026.1	3.8e-09	51.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G10810.1	6.5e-09	55.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..84
None	No IPR available	PANTHER	PTHR34061:SF9	SUBFAMILY NOT NAMED	coord: 3..84
None	No IPR available	PANTHER	PTHR34061	PROTEIN, PUTATIVE-RELATED	coord: 3..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g013020.1	Lcy02g013020.1	mRNA