Lcy02g011970 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTAAAGCTTACGACAGGGTTGAGTGGTCGTATCTGAGAGAGACTATGGCTGACGTGGAGTTCGATGATATCTGGATAGGAAAAATCATGATGTGCGTGGAATCGATCGAGTACTCGATCCTTATTAATGGTGTGCCCCAATCTACCATTAAGCCATCCAGAGGGCTGAGGCAAGGGGACCCCCTCTCCCCTTACCTGTTTTTGATTTGCGCAGAGGGCTGGACAAGCATGCTTAACAGGGAAGAGTCTCTTTTAAACTTTAAAGGGCTTAAGATTAATAAATTATGCCCGAACATTTCCCATCTTTTTTTCGCTGAAGATAGTTTAATTTTTTGTAGGGTGGAAGAAAAAGACTGCAGTACCATCAAAGGGATCCTAGAAGCTTATGAGAAAGCCTCGGGACAAGCTATAAACCTTGACAAATCGGTTTTCATGGTTAGCAAGAACGTCAAAAGTGGATAAAAGTAATAGGCTTAGTGAGATATTGGGGGTCAAGAAAGCGCAGTCGATAGGTCAATACTTGGGGATAAAAAACTTGATGCGAAATTTGCTAACCGCAAGTGTACGGGTCAAGTAATAATATAGTGTTTTCGTGATTAAACGAGTGTCGTCCTCTGGATTGGTTTTCTAGCAAATTAAGTACCGTGAATACTTTTGTTCAATTTTATTTAGGGAGCAAAACTCAAAGATAAAGATAAACGTAAAGACAAAAAGCAAAAAAAAAAAAGTGGAGACTCAAATGGAAAGACTCTTAGGGAATTGATTTCATTGATTAAGATTGAGGATTAATTAATGGGATGAATTTAGCATGCAATTATTCTACCAAGTCTAGGAACCTTTTATCACAACTATCTCTCCCGAGCATAATTGATTCTCATGTATGCAACCAACTTGATATCCCTATCTAAGTTCATTAACATGCAAGGCTTTGAGTTTAGTTCTTCAAGCAACTTCTAAAGTTATTCCAAATCCCGTCACAAACTTAGAATTTCTACTTTAGTCATGCAATTAAATAAATTAAGTCTTAGGCCAAATCCCCTCTCCCGAGCAAGATTCAACACTCAAATCATTCAACTAGTGATCAAGTAATTGAAAGCATTTAACCATAATTGCATAGGTAAAATAAATGCATATTCATACCACAAATCAATCCAACAAACTAAAACAACTACATCAAACCCTAAGACAAACAACTAGAAATTCATAGTCTTTAAATCACAAACACTAATTGAAAGAAAAACCATAAAAACTACAAGAGTTAAGGGAAAGAGAAAGGAAAACTCGAATCCGTCGAAACCGACACGTCCCCGTCACGATCTCCACGTCTTCTCGCTTGATTCCCGCTCCTTGGCCTTGCTTCAGCTCCCACCAAAGGTCTCTAGTCGAAATTAGGGCTAAAATCTAACCAATTGGACTCCCCCAATCCGTAACACAAAATGATGAATTTATAGAAAATCTGCCGACAGCGTCGAGACGCTATAGACAGCGTCGCGACGCTGTCGCGATACTGCGGATTTGGAAAATTCGCCGAGAGCGTCGCGACGCTATGATTTTTTTTTTTTTTTTTTTTAAAGAATGAAAACTCCAAATATAGAATGTCAGAGTCGAAACGCCCAAAGAGCAGCGTCTCGACGCTGGTCTGCGGATGAGCCTATCTTCAATCTTCCAACTTTGATTCTTTTTTCATTCTTCAGCTTCTTTTCGCATCCCGAACATCCAATTGGCTCAAAACTATATTTCCTACAAATACAACACATAAATGCATAATTTTGGCCAATAAATTATAAAAGACTAGCTAAATTAATTAGGGAAAACTAGCTAGCTATGCTCGCTATCAGGGATGCCCTCCCAGAACAATAGAAGTAAATCCCTGTTCTTCAAAAAGTTGAAAGTTAGAGTGGATAAAGCTCTCCAAAGCTAGAAGAAGAGTCTTTTTTCTATTGGGGGTAAAGAGATTTTGATTAAATCAATTGTCCAGGTCATTCCTACCTATACCATGGCTTGCTTCCGCCTTCCTAAAAGTCTTTGTGAAGATATCAACAAAGCTTGTGCACGCTTCTGGTGGGGAGCTTCTAAAAACAGGAGGAAGATTCATTGGTCCAGCTGGAGAAAGCTCTGCGTTGGGAAGGATCTAGGGGGCTTGGATTTAGAGATATTAGTCTCTTCAATCAAGCCATGCTAGCTAAACAAAGTTGGAGAATAGTTAGAAACCCCCAAAGTCTGTTAGCTACGATCCTCAGAGGCAGATACTATAAGGATAAGGACTTCCTTAATGCCCCCTTAGGGAACAATCCTTCTCTCACTTGGAGAAGCATAGTTTGGGGTAGAGATCTTTTTGTCAAAGGGTATAGATGGAAAGTGGGGAATGGTAAGCATATCAGAATAGGGATTGACCCGTGGCTCAAGGATAATAGCATTAGGTGCCCTATAGCCATCCCAAACCGTTTAGAAGGTGCGAGAGTGAGTAACCTCATCAAAGAGGATGGAAGCTGGAACGAGAGCCTTATTAAAGAAAGCCCAAGAAGTGGAAGAAATTCTTAG ATGAGTAAAGCTTACGACAGGGTTGAGTGGTCGTATCTGAGAGAGACTATGGCTGACGTGGAGTTCGATGATATCTGGATAGGAAAAATCATGATGTGCGTGGAATCGATCGAGTACTCGATCCTTATTAATGGTGTGCCCCAATCTACCATTAAGCCATCCAGAGGGCTGAGGCAAGGGGACCCCCTCTCCCCTTACCTGTTTTTGATTTGCGCAGAGGGCTGGACAAGCATGCTTAACAGGGAAGAGTCTCTTTTAAACTTTAAAGGGCTTAAGATTAATAAATTATGCCCGAACATTTCCCATCTTTTTTTCGCTGAAGATAGTTTAATTTTTTGTAGGGTGGAAGAAAAAGACTGCAGTACCATCAAAGGGATCCTAGAAGCTTATGAGAAAGCCTCGGGACAAGCTATAAACCTTGACAAATCGGTTTTCATGGAGGAAGATTCATTGGTCCAGCTGGAGAAAGCTCTGCGTTGGGAAGGATCTAGGGGGCTTGGATTTAGAGATATTAGTCTCTTCAATCAAGCCATGCTAGCTAAACAAAGTTGGAGAATAGTTAGAAACCCCCAAAGTCTGTTAGCTACGATCCTCAGAGGCAGATACTATAAGGATAAGGACTTCCTTAATGCCCCCTTAGGGAACAATCCTTCTCTCACTTGGAGAAGCATAGTTTGGGGTAGAGATCTTTTTGTCAAAGGGTATAGATGGAAAGTGGGGAATGGTAAGCATATCAGAATAGGGATTGACCCGTGGCTCAAGGATAATAGCATTAGGTGCCCTATAGCCATCCCAAACCGTTTAGAAGGTGCGAGAGTGAGTAACCTCATCAAAGAGGATGGAAGCTGGAACGAGAGCCTTATTAAAGAAAGCCCAAGAAGTGGAAGAAATTCTTAG ATGAGTAAAGCTTACGACAGGGTTGAGTGGTCGTATCTGAGAGAGACTATGGCTGACGTGGAGTTCGATGATATCTGGATAGGAAAAATCATGATGTGCGTGGAATCGATCGAGTACTCGATCCTTATTAATGGTGTGCCCCAATCTACCATTAAGCCATCCAGAGGGCTGAGGCAAGGGGACCCCCTCTCCCCTTACCTGTTTTTGATTTGCGCAGAGGGCTGGACAAGCATGCTTAACAGGGAAGAGTCTCTTTTAAACTTTAAAGGGCTTAAGATTAATAAATTATGCCCGAACATTTCCCATCTTTTTTTCGCTGAAGATAGTTTAATTTTTTGTAGGGTGGAAGAAAAAGACTGCAGTACCATCAAAGGGATCCTAGAAGCTTATGAGAAAGCCTCGGGACAAGCTATAAACCTTGACAAATCGGTTTTCATGGAGGAAGATTCATTGGTCCAGCTGGAGAAAGCTCTGCGTTGGGAAGGATCTAGGGGGCTTGGATTTAGAGATATTAGTCTCTTCAATCAAGCCATGCTAGCTAAACAAAGTTGGAGAATAGTTAGAAACCCCCAAAGTCTGTTAGCTACGATCCTCAGAGGCAGATACTATAAGGATAAGGACTTCCTTAATGCCCCCTTAGGGAACAATCCTTCTCTCACTTGGAGAAGCATAGTTTGGGGTAGAGATCTTTTTGTCAAAGGGTATAGATGGAAAGTGGGGAATGGTAAGCATATCAGAATAGGGATTGACCCGTGGCTCAAGGATAATAGCATTAGGTGCCCTATAGCCATCCCAAACCGTTTAGAAGGTGCGAGAGTGAGTAACCTCATCAAAGAGGATGGAAGCTGGAACGAGAGCCTTATTAAAGAAAGCCCAAGAAGTGGAAGAAATTCTTAG MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQGDPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDCSTIKGILEAYEKASGQAINLDKSVFMEEDSLVQLEKALRWEGSRGLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPSLTWRSIVWGRDLFVKGYRWKVGNGKHIRIGIDPWLKDNSIRCPIAIPNRLEGARVSNLIKEDGSWNESLIKESPRSGRNS Homology
BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 5.1e-21 Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 8.0e-14 Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 2.2e-08 Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2) HSP 1 Score: 58.2 bits (139), Expect = 1.9e-07 Identity = 39/157 (24.84%), Postives = 72/157 (45.86%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: Q05118 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.1e-06 Identity = 41/142 (28.87%), Postives = 64/142 (45.07%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803PHB2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68 Identity = 129/290 (44.48%), Postives = 172/290 (59.31%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803PI64 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66 Identity = 136/339 (40.12%), Postives = 184/339 (54.28%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803P996 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 9.3e-66 Identity = 138/370 (37.30%), Postives = 192/370 (51.89%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803QQL5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 1.0e-64 Identity = 137/369 (37.13%), Postives = 192/369 (52.03%), Query Frame = 0
BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803PEK8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64 Identity = 125/315 (39.68%), Postives = 179/315 (56.83%), Query Frame = 0
BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_013658605.1 (uncharacterized protein LOC106363406 [Brassica napus]) HSP 1 Score: 260.0 bits (663), Expect = 2.5e-65 Identity = 134/294 (45.58%), Postives = 184/294 (62.59%), Query Frame = 0
BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_030502375.1 (uncharacterized protein LOC115717530 [Cannabis sativa]) HSP 1 Score: 252.3 bits (643), Expect = 5.2e-63 Identity = 138/401 (34.41%), Postives = 190/401 (47.38%), Query Frame = 0
BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis]) HSP 1 Score: 250.0 bits (637), Expect = 2.6e-62 Identity = 124/312 (39.74%), Postives = 192/312 (61.54%), Query Frame = 0
BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_030502418.1 (uncharacterized protein LOC115717574 [Cannabis sativa]) HSP 1 Score: 248.1 bits (632), Expect = 9.9e-62 Identity = 137/401 (34.16%), Postives = 193/401 (48.13%), Query Frame = 0
BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_010495165.1 (PREDICTED: uncharacterized protein LOC104772227 [Camelina sativa]) HSP 1 Score: 248.1 bits (632), Expect = 9.9e-62 Identity = 139/330 (42.12%), Postives = 189/330 (57.27%), Query Frame = 0
BLAST of Lcy02g011970 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 103.2 bits (256), Expect = 3.7e-22 Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0
BLAST of Lcy02g011970 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 99.4 bits (246), Expect = 5.3e-21 Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 0
BLAST of Lcy02g011970 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) ) HSP 1 Score: 79.3 bits (194), Expect = 5.7e-15 Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
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