Lcy02g011970 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g011970
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr02: 36275725 .. 36278268 (-)
RNA-Seq ExpressionLcy02g011970
SyntenyLcy02g011970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAAGCTTACGACAGGGTTGAGTGGTCGTATCTGAGAGAGACTATGGCTGACGTGGAGTTCGATGATATCTGGATAGGAAAAATCATGATGTGCGTGGAATCGATCGAGTACTCGATCCTTATTAATGGTGTGCCCCAATCTACCATTAAGCCATCCAGAGGGCTGAGGCAAGGGGACCCCCTCTCCCCTTACCTGTTTTTGATTTGCGCAGAGGGCTGGACAAGCATGCTTAACAGGGAAGAGTCTCTTTTAAACTTTAAAGGGCTTAAGATTAATAAATTATGCCCGAACATTTCCCATCTTTTTTTCGCTGAAGATAGTTTAATTTTTTGTAGGGTGGAAGAAAAAGACTGCAGTACCATCAAAGGGATCCTAGAAGCTTATGAGAAAGCCTCGGGACAAGCTATAAACCTTGACAAATCGGTTTTCATGGTTAGCAAGAACGTCAAAAGTGGATAAAAGTAATAGGCTTAGTGAGATATTGGGGGTCAAGAAAGCGCAGTCGATAGGTCAATACTTGGGGATAAAAAACTTGATGCGAAATTTGCTAACCGCAAGTGTACGGGTCAAGTAATAATATAGTGTTTTCGTGATTAAACGAGTGTCGTCCTCTGGATTGGTTTTCTAGCAAATTAAGTACCGTGAATACTTTTGTTCAATTTTATTTAGGGAGCAAAACTCAAAGATAAAGATAAACGTAAAGACAAAAAGCAAAAAAAAAAAAGTGGAGACTCAAATGGAAAGACTCTTAGGGAATTGATTTCATTGATTAAGATTGAGGATTAATTAATGGGATGAATTTAGCATGCAATTATTCTACCAAGTCTAGGAACCTTTTATCACAACTATCTCTCCCGAGCATAATTGATTCTCATGTATGCAACCAACTTGATATCCCTATCTAAGTTCATTAACATGCAAGGCTTTGAGTTTAGTTCTTCAAGCAACTTCTAAAGTTATTCCAAATCCCGTCACAAACTTAGAATTTCTACTTTAGTCATGCAATTAAATAAATTAAGTCTTAGGCCAAATCCCCTCTCCCGAGCAAGATTCAACACTCAAATCATTCAACTAGTGATCAAGTAATTGAAAGCATTTAACCATAATTGCATAGGTAAAATAAATGCATATTCATACCACAAATCAATCCAACAAACTAAAACAACTACATCAAACCCTAAGACAAACAACTAGAAATTCATAGTCTTTAAATCACAAACACTAATTGAAAGAAAAACCATAAAAACTACAAGAGTTAAGGGAAAGAGAAAGGAAAACTCGAATCCGTCGAAACCGACACGTCCCCGTCACGATCTCCACGTCTTCTCGCTTGATTCCCGCTCCTTGGCCTTGCTTCAGCTCCCACCAAAGGTCTCTAGTCGAAATTAGGGCTAAAATCTAACCAATTGGACTCCCCCAATCCGTAACACAAAATGATGAATTTATAGAAAATCTGCCGACAGCGTCGAGACGCTATAGACAGCGTCGCGACGCTGTCGCGATACTGCGGATTTGGAAAATTCGCCGAGAGCGTCGCGACGCTATGATTTTTTTTTTTTTTTTTTTTAAAGAATGAAAACTCCAAATATAGAATGTCAGAGTCGAAACGCCCAAAGAGCAGCGTCTCGACGCTGGTCTGCGGATGAGCCTATCTTCAATCTTCCAACTTTGATTCTTTTTTCATTCTTCAGCTTCTTTTCGCATCCCGAACATCCAATTGGCTCAAAACTATATTTCCTACAAATACAACACATAAATGCATAATTTTGGCCAATAAATTATAAAAGACTAGCTAAATTAATTAGGGAAAACTAGCTAGCTATGCTCGCTATCAGGGATGCCCTCCCAGAACAATAGAAGTAAATCCCTGTTCTTCAAAAAGTTGAAAGTTAGAGTGGATAAAGCTCTCCAAAGCTAGAAGAAGAGTCTTTTTTCTATTGGGGGTAAAGAGATTTTGATTAAATCAATTGTCCAGGTCATTCCTACCTATACCATGGCTTGCTTCCGCCTTCCTAAAAGTCTTTGTGAAGATATCAACAAAGCTTGTGCACGCTTCTGGTGGGGAGCTTCTAAAAACAGGAGGAAGATTCATTGGTCCAGCTGGAGAAAGCTCTGCGTTGGGAAGGATCTAGGGGGCTTGGATTTAGAGATATTAGTCTCTTCAATCAAGCCATGCTAGCTAAACAAAGTTGGAGAATAGTTAGAAACCCCCAAAGTCTGTTAGCTACGATCCTCAGAGGCAGATACTATAAGGATAAGGACTTCCTTAATGCCCCCTTAGGGAACAATCCTTCTCTCACTTGGAGAAGCATAGTTTGGGGTAGAGATCTTTTTGTCAAAGGGTATAGATGGAAAGTGGGGAATGGTAAGCATATCAGAATAGGGATTGACCCGTGGCTCAAGGATAATAGCATTAGGTGCCCTATAGCCATCCCAAACCGTTTAGAAGGTGCGAGAGTGAGTAACCTCATCAAAGAGGATGGAAGCTGGAACGAGAGCCTTATTAAAGAAAGCCCAAGAAGTGGAAGAAATTCTTAG

mRNA sequence

ATGAGTAAAGCTTACGACAGGGTTGAGTGGTCGTATCTGAGAGAGACTATGGCTGACGTGGAGTTCGATGATATCTGGATAGGAAAAATCATGATGTGCGTGGAATCGATCGAGTACTCGATCCTTATTAATGGTGTGCCCCAATCTACCATTAAGCCATCCAGAGGGCTGAGGCAAGGGGACCCCCTCTCCCCTTACCTGTTTTTGATTTGCGCAGAGGGCTGGACAAGCATGCTTAACAGGGAAGAGTCTCTTTTAAACTTTAAAGGGCTTAAGATTAATAAATTATGCCCGAACATTTCCCATCTTTTTTTCGCTGAAGATAGTTTAATTTTTTGTAGGGTGGAAGAAAAAGACTGCAGTACCATCAAAGGGATCCTAGAAGCTTATGAGAAAGCCTCGGGACAAGCTATAAACCTTGACAAATCGGTTTTCATGGAGGAAGATTCATTGGTCCAGCTGGAGAAAGCTCTGCGTTGGGAAGGATCTAGGGGGCTTGGATTTAGAGATATTAGTCTCTTCAATCAAGCCATGCTAGCTAAACAAAGTTGGAGAATAGTTAGAAACCCCCAAAGTCTGTTAGCTACGATCCTCAGAGGCAGATACTATAAGGATAAGGACTTCCTTAATGCCCCCTTAGGGAACAATCCTTCTCTCACTTGGAGAAGCATAGTTTGGGGTAGAGATCTTTTTGTCAAAGGGTATAGATGGAAAGTGGGGAATGGTAAGCATATCAGAATAGGGATTGACCCGTGGCTCAAGGATAATAGCATTAGGTGCCCTATAGCCATCCCAAACCGTTTAGAAGGTGCGAGAGTGAGTAACCTCATCAAAGAGGATGGAAGCTGGAACGAGAGCCTTATTAAAGAAAGCCCAAGAAGTGGAAGAAATTCTTAG

Coding sequence (CDS)

ATGAGTAAAGCTTACGACAGGGTTGAGTGGTCGTATCTGAGAGAGACTATGGCTGACGTGGAGTTCGATGATATCTGGATAGGAAAAATCATGATGTGCGTGGAATCGATCGAGTACTCGATCCTTATTAATGGTGTGCCCCAATCTACCATTAAGCCATCCAGAGGGCTGAGGCAAGGGGACCCCCTCTCCCCTTACCTGTTTTTGATTTGCGCAGAGGGCTGGACAAGCATGCTTAACAGGGAAGAGTCTCTTTTAAACTTTAAAGGGCTTAAGATTAATAAATTATGCCCGAACATTTCCCATCTTTTTTTCGCTGAAGATAGTTTAATTTTTTGTAGGGTGGAAGAAAAAGACTGCAGTACCATCAAAGGGATCCTAGAAGCTTATGAGAAAGCCTCGGGACAAGCTATAAACCTTGACAAATCGGTTTTCATGGAGGAAGATTCATTGGTCCAGCTGGAGAAAGCTCTGCGTTGGGAAGGATCTAGGGGGCTTGGATTTAGAGATATTAGTCTCTTCAATCAAGCCATGCTAGCTAAACAAAGTTGGAGAATAGTTAGAAACCCCCAAAGTCTGTTAGCTACGATCCTCAGAGGCAGATACTATAAGGATAAGGACTTCCTTAATGCCCCCTTAGGGAACAATCCTTCTCTCACTTGGAGAAGCATAGTTTGGGGTAGAGATCTTTTTGTCAAAGGGTATAGATGGAAAGTGGGGAATGGTAAGCATATCAGAATAGGGATTGACCCGTGGCTCAAGGATAATAGCATTAGGTGCCCTATAGCCATCCCAAACCGTTTAGAAGGTGCGAGAGTGAGTAACCTCATCAAAGAGGATGGAAGCTGGAACGAGAGCCTTATTAAAGAAAGCCCAAGAAGTGGAAGAAATTCTTAG

Protein sequence

MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQGDPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDCSTIKGILEAYEKASGQAINLDKSVFMEEDSLVQLEKALRWEGSRGLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPSLTWRSIVWGRDLFVKGYRWKVGNGKHIRIGIDPWLKDNSIRCPIAIPNRLEGARVSNLIKEDGSWNESLIKESPRSGRNS
Homology
BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.1e-21
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0

Query: 161 EGSRGLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPSLT 220
           E   GLGFRD+  FNQA+LAKQS+RI+  P +LL+ +LR RY+     +   +G  PS  
Sbjct: 52  EDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYA 111

Query: 221 WRSIVWGRDLFVKGYRWKVGNGKHIRIGIDPWLKDNSIRCPI 263
           WRSI+ GR+L  +G    +G+G H ++ +D W+ D +   P+
Sbjct: 112 WRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.0e-14
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 42  LINGVPQSTIKPSRGLRQGDPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNIS 101
           +ING PQ  + PSRGLRQGDPLSPYLF++C E  + +  R +      G++++   P I+
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 102 HLFFAEDS 110
           HL FA+D+
Sbjct: 73  HLLFADDT 80

BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-08
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 0

Query: 147 EEDSLVQLEKALRWEGSRGLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYY--- 206
           ++  LV+  K    +   GLG R     N+A+++K  WR+++   SL   +L+ +Y+   
Sbjct: 82  KKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGE 141

Query: 207 -KDKDFLNAPLGNNPSLTWRSIVWG-RDLFVKGYRWKVGNGKHIRIGIDPWL 254
            +D  +L  P G+  S TWRSI  G RD+   G  W  G+G+ IR   D W+
Sbjct: 142 IRDSRWL-IPKGSWSS-TWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWV 191

BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-07
Identity = 39/157 (24.84%), Postives = 72/157 (45.86%), Query Frame = 0

Query: 3   KAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQGDP 62
           KA+D+++  ++ + +        ++  I         +I +NG     I    G RQG P
Sbjct: 610 KAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCP 669

Query: 63  LSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDCST 122
           LSPYLF I  E     + +++ +   KG++I K    IS L  A+D +++    +     
Sbjct: 670 LSPYLFNIVLEVLARAIRQQKEI---KGIQIGKEEVKISLL--ADDMIVYISDPKNSTRE 729

Query: 123 IKGILEAYEKASGQAINLDKSVFMEEDSLVQLEKALR 160
           +  ++ ++ +  G  IN +KS+        Q EK +R
Sbjct: 730 LLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIR 761

BLAST of Lcy02g011970 vs. ExPASy Swiss-Prot
Match: Q05118 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-06
Identity = 41/142 (28.87%), Postives = 64/142 (45.07%), Query Frame = 0

Query: 3   KAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQGDP 62
           KA+D V    +   M     DD     IM  +     +I++ G   + I    G++QGDP
Sbjct: 32  KAFDTVSHPAILRAMRAFGIDDGMQDFIMSTITDAYTNIVVGGRTTNKIYIRNGVKQGDP 91

Query: 63  LSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDCST 122
           LSP LF I  +   + LN E+      G  +   C  I+ L FA+D L+   +E++D   
Sbjct: 92  LSPVLFNIVLDELVTRLNDEQ-----PGASMTPAC-KIASLAFADDLLL---LEDRDIDV 151

Query: 123 IKGILE--AYEKASGQAINLDK 143
              +    AY +  G  +N +K
Sbjct: 152 PNSLATTCAYFRTRGMTLNPEK 164

BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803PHB2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68
Identity = 129/290 (44.48%), Postives = 172/290 (59.31%), Query Frame = 0

Query: 1   MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
           M+KA+DRVEW ++ E M  + F   W   IM C+ +  +S LING     + PS+GLRQG
Sbjct: 520 MNKAFDRVEWRFIEEVMKKMGFFSQWTSLIMRCLTTNSFSFLINGEVMGALTPSKGLRQG 579

Query: 61  DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
            PLSPYLFLIC+EG + +L  E+ + N  G K+ +    ISHL FA+DSL+FC+  E  C
Sbjct: 580 CPLSPYLFLICSEGLSRLLQHEQDIDNLNGFKLTRRATPISHLLFADDSLLFCQANESSC 639

Query: 121 STIKGILEAYEKASGQAINLDKSVFMEEDSLVQLEKALRWEGSRGLGFRDISLFNQAMLA 180
            TIK +L+ Y + SGQ +N +KS                     G+GFR    FNQA+LA
Sbjct: 640 LTIKRVLDLYHRISGQVLNSNKSC------------------DGGMGFRSFVHFNQALLA 699

Query: 181 KQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPSLTWRSIVWGRDLFVKGYRWKVG 240
           KQ+WR+V  P SLL  +L+ RYY     L A +G++PSLTW++I WG+DL   G RWKVG
Sbjct: 700 KQAWRLVEKPDSLLGQLLKSRYYPHNSVLEAHIGHSPSLTWQAIHWGKDLLKSGLRWKVG 759

Query: 241 NGKHIRIGIDPWLKDNSIRCPIAIPNRLEGARVSNLIKEDGSWNESLIKE 291
            G+ I  G DPWL  +S   P      L G  V+NLI  D  WN  L+++
Sbjct: 760 EGRSILSGTDPWLPGHSSFLPFHYTGPLNGT-VANLITPDRQWNMPLLQQ 790

BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803PI64 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 136/339 (40.12%), Postives = 184/339 (54.28%), Query Frame = 0

Query: 1    MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
            M+KAYDRVEW +L   M+ + F   W+ KIM CV S  +S LING  +  + P RGLRQG
Sbjct: 829  MAKAYDRVEWLFLSAVMSRLGFAQCWVDKIMRCVTSTSFSFLINGETKGKLIPERGLRQG 888

Query: 61   DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
            DPLSP+LFL CAE  +S++ +EES    +G++ N+L  ++SHLFFA+DSL+F   +   C
Sbjct: 889  DPLSPFLFLFCAEALSSLIQQEESAGRLRGIRFNRLGVSVSHLFFADDSLVFIDADMDSC 948

Query: 121  STIKGILEAYEKASGQAINLDKS-------VFMEE------------------------- 180
               + IL  Y  ASGQ +N  KS       V  E                          
Sbjct: 949  LQFQQILTKYTAASGQIVNYHKSEACFGCNVSAETRFQLAGMMGVREVDNHGKYLGLPSF 1008

Query: 181  ---------DSLVQLEKALRW---------EGSRGLGFRDISLFNQAMLAKQSWRIVRNP 240
                     D +   EK + W         +   GLGFRD+ +FNQA+LAKQ WR +R+P
Sbjct: 1009 VGRNKKEFLDEIKNKEKKIHWCKWRYLCRPKDKGGLGFRDLGMFNQALLAKQIWRCIRHP 1068

Query: 241  QSLLATILRGRYYKDKDFLNAPLGNNPSLTWRSIVWGRDLFVKGYRWKVGNGKHIRIGID 290
            Q L + +L+  Y+  K FL A  G N S  WRS+VWG+ L +KGYRW+VGNG+ +R+  D
Sbjct: 1069 QQLCSRVLKASYFPHKGFLEAGCGANASFVWRSLVWGKKLILKGYRWRVGNGESVRVLED 1128

BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803P996 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 9.3e-66
Identity = 138/370 (37.30%), Postives = 192/370 (51.89%), Query Frame = 0

Query: 1    MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
            MSKA+DRVEW ++ E M  + F + WI  IM C+ +  +S +ING     + PSRGL+QG
Sbjct: 993  MSKAFDRVEWKFIEEVMRKMGFAERWISLIMSCLTTNNFSFIINGEVMGDLTPSRGLQQG 1052

Query: 61   DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
             PLSPYLFLIC+EG++ +L  E+   N  G K+ +  P I+HLFFA+DSL+FC+  E+ C
Sbjct: 1053 CPLSPYLFLICSEGFSRLLQHEQDSHNLMGFKLTRHAPPITHLFFADDSLLFCQANERSC 1112

Query: 121  STIKGILEAYEKASGQAINLDKSVFM---------------------------------- 180
              IK +L+ Y KASGQ +NLDKSV                                    
Sbjct: 1113 LAIKRVLDTYHKASGQELNLDKSVMSFSPNTTLAAQVFFHQQLSMPICECHEKYLGLPSY 1172

Query: 181  ----EEDSLVQLEKALR----------------------------W----EGSR------ 240
                +++    +++ +R                            W     GSR      
Sbjct: 1173 SGRDKKEMFSNIKERIRKLMNSWNEKIFSAAYFCKQVESMMANFWWGLTENGSRIHWRSW 1232

Query: 241  ----------GLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLG 285
                      G+GFR    FNQA+LAKQ+WRI   P SLL  IL+ RY+ + +FL A LG
Sbjct: 1233 NLLCKSKLEGGMGFRSFIHFNQALLAKQAWRIFEKPHSLLGRILKSRYFPNNNFLEASLG 1292

BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803QQL5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.0e-64
Identity = 137/369 (37.13%), Postives = 192/369 (52.03%), Query Frame = 0

Query: 1   MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
           MSKA+DRVEW +L   M  + F + WI  +M C+ +  +S LING  +  + P+RGLRQG
Sbjct: 202 MSKAFDRVEWCFLEVVMRQMGFVERWISLVMSCLTTNTFSFLINGEVKGELTPTRGLRQG 261

Query: 61  DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
            PLSPYLFLIC+EG++ +L+ E+   + +G K+ +  P ISHLFFA+DSL+FC+ ++  C
Sbjct: 262 CPLSPYLFLICSEGFSRLLHHEQQTGHLRGFKLTRNAPPISHLFFADDSLLFCQADDSSC 321

Query: 121 STIKGILEAYEKASGQAINLDKSV--FMEEDSLVQL---------------EKALR---- 180
             IK +L+ Y KASGQ +NLDKSV  F    +L                  EK L     
Sbjct: 322 LAIKRVLDIYHKASGQTLNLDKSVMSFSPNTTLAAQVFFHRHLSMPICDCHEKYLGLPSY 381

Query: 181 -------------------------------------WEGSR------------------ 240
                                                W GS                   
Sbjct: 382 SGRDKKELFSNIKEKIWKLMNTWNEKIFSAESMMSNFWWGSNKNGSKIHWRSWNLLCKSK 441

Query: 241 ---GLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPSLTW 291
              G+GFR     NQA+LAKQ+WR+++ P SLL  +L+ RY+    FL+APLG++PS TW
Sbjct: 442 SDGGMGFRSFVHLNQALLAKQAWRLLQQPDSLLGRLLKSRYFYQNGFLDAPLGHSPSYTW 501

BLAST of Lcy02g011970 vs. ExPASy TrEMBL
Match: A0A803PEK8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 125/315 (39.68%), Postives = 179/315 (56.83%), Query Frame = 0

Query: 1    MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
            M+KAYDRVEW +LR  M  + +D  W+ K+M CV S+ +S LING  Q  + P RGLRQG
Sbjct: 914  MAKAYDRVEWHFLRAMMMRLGYDIDWVDKVMRCVTSVSFSFLINGDVQGRVIPERGLRQG 973

Query: 61   DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
            DPLSP+LFL  AE +++++  EE   + +GL+  +   ++SHLFF  DSLIF   +   C
Sbjct: 974  DPLSPFLFLFYAEAFSNLIQHEEQEGSLRGLRFGRRGLSVSHLFFVNDSLIFMDADMGSC 1033

Query: 121  STIKGILEAYEKASGQAINLDKS-----------------VFMEEDSLVQLEKALRW--- 180
               KG+L+ Y  ASGQ +N  KS                 +F   + L  +EK + W   
Sbjct: 1034 QRFKGLLDLYSDASGQLVNFHKSEVCFGRNVDRGFSNSLLLFWGSERLNTMEKKIHWCKW 1093

Query: 181  ------EGSRGLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLG 240
                  +   GLGFRD+ LFNQA+LAKQ WR +R P +L + +L+  Y+  +  L A  G
Sbjct: 1094 AHLCKPKEKGGLGFRDLGLFNQALLAKQVWRCIRFPDNLCSQVLKASYFPTRSILEAKSG 1153

Query: 241  NNPSLTWRSIVWGRDLFVKGYRWKVGNGKHIRIGIDPWLKDNSIRCPIAIPNRLEGARVS 290
             + S  WRS++WG+ +   GYRW+VGNG+ +R+  DPWL           P   E   V+
Sbjct: 1154 AHASFVWRSLMWGKKVIANGYRWRVGNGETVRVLEDPWLSRPVTFKIYDKPPLPENLYVA 1213

BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_013658605.1 (uncharacterized protein LOC106363406 [Brassica napus])

HSP 1 Score: 260.0 bits (663), Expect = 2.5e-65
Identity = 134/294 (45.58%), Postives = 184/294 (62.59%), Query Frame = 0

Query: 1   MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
           MSKAYDRVEW YLR+ +  + F + WI  +M CV S+ +S+LIN  P   I P RGLRQG
Sbjct: 245 MSKAYDRVEWGYLRQLLKALGFSEKWILWVMACVTSVTFSVLINDQPHGMIVPERGLRQG 304

Query: 61  DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
           DPLSP+LF++CAEG + +L + E     KG+   +  P ISHL FA+DSL  C+ +E  C
Sbjct: 305 DPLSPFLFVLCAEGLSHLLKQAELEGKVKGVSFGEEGPIISHLLFADDSLFMCKADEDHC 364

Query: 121 STIKGILEAYEKASGQAINLDKSVFMEEDSLVQLEKALRWEGSRGLGFRDISLFNQAMLA 180
           + +K IL  YEKA+GQ IN+DKS        +   K +  E   GLGF+DI LFNQA+LA
Sbjct: 365 NHLKAILRRYEKATGQTINVDKSA-------ITFGKKVD-EDLGGLGFKDIELFNQALLA 424

Query: 181 KQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPSLTWRSIVWGRDLFVKGYRWKVG 240
           KQ+WR++  P SLLA +L+ RY+   DFL A  G  PSL W+SI+ GR+L  KG   ++G
Sbjct: 425 KQAWRLLNFPNSLLARLLKSRYFPHGDFLKAVTGVKPSLGWKSILHGRELVEKGISRRIG 484

Query: 241 NGKHIRIGIDPWL--KDNSIRCPIAIPNRLEG-ARVSNLIKEDGS-WNESLIKE 291
           + K   +  DPW+  +D S+R P       +   +V ++I  DG+ WN   ++E
Sbjct: 485 DRKSSFVWTDPWMEDEDGSMRAPWRKNYFFDSMLKVKDIINADGNQWNYDKLQE 530

BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_030502375.1 (uncharacterized protein LOC115717530 [Cannabis sativa])

HSP 1 Score: 252.3 bits (643), Expect = 5.2e-63
Identity = 138/401 (34.41%), Postives = 190/401 (47.38%), Query Frame = 0

Query: 1   MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
           MSKA+DRVEW ++ E M  + F + WI  IM C+ +  +S LING     + PSRGLRQG
Sbjct: 1   MSKAFDRVEWRFIEEVMRKMGFAERWISLIMSCLTTNSFSFLINGEVMGNLTPSRGLRQG 60

Query: 61  DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
            PLSPYLFLIC+EG++ +L  ++ + N  G K+ +  P I+HLFFA+DSL+FC+  E+ C
Sbjct: 61  CPLSPYLFLICSEGFSRLLQHQQEIGNLMGFKLTRHAPPITHLFFADDSLLFCQATERSC 120

Query: 121 STIKGILEAYEKASGQAINLDKSVF----------------------------------- 180
             IK +LE Y KASGQ +NL KSV                                    
Sbjct: 121 LAIKSVLETYHKASGQELNLSKSVMSFSPNTTLAAQVFFHQQLAMPICECHEKYLGLPSY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 SGRDKKEMFSHIKEKIWKLMNTWHEKFFLAGGKEVLLKAVVQSIPTYAMSCFRLPVYFCK 240

Query: 241 MEEDSLVQLEKALRWEGSR----------------GLGFRDISLFNQAMLAKQSWRIVRN 291
             E  +V     L   GS+                G+GFR    FNQA+LAKQ+WRI  N
Sbjct: 241 QVESMMVNFWWGLTENGSKIHWRSWNLLCKSKSEGGMGFRSFIHFNQALLAKQAWRIYDN 300

BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis])

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-62
Identity = 124/312 (39.74%), Postives = 192/312 (61.54%), Query Frame = 0

Query: 1   MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
           +SKAYD VEW +LR T+  + F   W+  +M C+ +  +S+LINGV +  I+  RGLRQG
Sbjct: 445 ISKAYDMVEWEFLRCTLGMLGFSHKWVELVMRCISTTSFSVLINGVAKGLIQLKRGLRQG 504

Query: 61  DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
            PLSPYLF+ICA  +T++L++ E+     GLK N+   +I+H+ FA+DSL+F R  ++DC
Sbjct: 505 CPLSPYLFIICA--FTNLLHQAEANQLIHGLKFNRNL-SITHILFADDSLVFTRATKEDC 564

Query: 121 STIKGILEAYEKASGQAINLDKSVFMEEDSL-------------VQLEKALRWE------ 180
           + +K + + Y  ASG+  N +KS     D+              +Q ++++ W       
Sbjct: 565 TNLKQLFDCYAAASGKIFNFEKSFMFFSDNAKQGQIATIKDIFQLQEKRSIHWSKWERMC 624

Query: 181 --GSRG-LGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPS 240
               RG LGFRD+S FNQA++AKQSWRI++ P+SLLA +++ +Y++   F+ A +G+NPS
Sbjct: 625 QAKKRGDLGFRDLSSFNQALVAKQSWRIIQAPESLLARVMKEKYFRHSGFMEAQVGSNPS 684

Query: 241 LTWRSIVWGRDLFVKGYRWKVGNGKHIRIGIDPWLKDNSIRCPIAIPNRLEGARVSNLIK 291
             WRSI+WGR++  KG RW++ +GK +++    WL       PI+ P+      VS LI 
Sbjct: 685 YIWRSILWGREVIHKGLRWRIRDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLID 744

BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_030502418.1 (uncharacterized protein LOC115717574 [Cannabis sativa])

HSP 1 Score: 248.1 bits (632), Expect = 9.9e-62
Identity = 137/401 (34.16%), Postives = 193/401 (48.13%), Query Frame = 0

Query: 1   MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
           MSKA+DRVEW ++ E M  + F   W+  IM C+ +  +S L+NG    ++ P+RGLRQG
Sbjct: 512 MSKAFDRVEWQFIEEVMKKMGFAHSWVKIIMGCLTTNRFSFLVNGEVTGSLTPTRGLRQG 571

Query: 61  DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
            PLSPYLFLICA+G + +L  E+ L N  G K+ +  P ISHL FA+DSL+FC+ +E  C
Sbjct: 572 CPLSPYLFLICAKGLSRLLQHEQDLGNLHGFKLTRRAPMISHLLFADDSLLFCQADESSC 631

Query: 121 STIKGILEAYEKASGQAINLDKSV-----------------------------------F 180
             IK +L+ Y +ASGQ IN DKSV                                   +
Sbjct: 632 LAIKRVLDIYHRASGQLINRDKSVMSFSPNTTLAAQVFFHRHLSMPISECHERYLGLPSY 691

Query: 181 MEEDSLV----------------------------------------------------- 240
              D  V                                                     
Sbjct: 692 SGRDKKVLFSNIKERIWKLMQSWNEKLFSAGGREVLLKAVVQSIPTYAMSCFRLPVYFCN 751

Query: 241 QLEKAL-----------------------RWEGSRGLGFRDISLFNQAMLAKQSWRIVRN 291
           QLE  +                       + +G  G+GFR    FNQA+LAKQ+WR+V N
Sbjct: 752 QLESMMSNFWWGMNENGSKIHWRSWNLLCKTKGEGGMGFRSFIQFNQALLAKQAWRLVDN 811

BLAST of Lcy02g011970 vs. NCBI nr
Match: XP_010495165.1 (PREDICTED: uncharacterized protein LOC104772227 [Camelina sativa])

HSP 1 Score: 248.1 bits (632), Expect = 9.9e-62
Identity = 139/330 (42.12%), Postives = 189/330 (57.27%), Query Frame = 0

Query: 1   MSKAYDRVEWSYLRETMADVEFDDIWIGKIMMCVESIEYSILINGVPQSTIKPSRGLRQG 60
           ++KAYDR+EW +L+ETM    FD  W+  IM C+ S  +S+ ING PQ  I+P RG+ QG
Sbjct: 428 ITKAYDRLEWDFLQETMLKFGFDTKWVQWIMTCIRSPTFSVDINGNPQGFIQPERGILQG 487

Query: 61  DPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNISHLFFAEDSLIFCRVEEKDC 120
           DPLSPYLF++CAE  + M+ R E+    KG+KI+   P ISHL FA+DSL FC+   K C
Sbjct: 488 DPLSPYLFILCAEVLSHMMKRAEAEGLIKGIKISNASPAISHLLFADDSLFFCQANIKSC 547

Query: 121 STIKGILEAYEKASGQAINLDKSVF----MEEDSL-----------------------VQ 180
           + I+ IL  YE+ASGQ IN  KS         D+L                        Q
Sbjct: 548 TAIRDILTQYERASGQQINNRKSALTFGKRVPDALKTQIRRRLNIHNDGGCGKYLGLPEQ 607

Query: 181 LEKALRW-----------EGSRGLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRY 240
              A+ W           EGS  LGFRD+  FN A+LAKQ WRI+++P SLL+ +L+GRY
Sbjct: 608 FGNAVHWVAWDRLKFLKTEGS--LGFRDLERFNDALLAKQIWRILQHPTSLLSRVLKGRY 667

Query: 241 YKDKDFLNAPLGNNPSLTWRSIVWGRDLFVKGYRWKVGNGKHIRIGIDPWLKDNSIRCP- 291
           + +   L A  G  PS  W  +V GRDL  +G R+ +GNG+ I    DPWL  +  R P 
Sbjct: 668 FSNTSILEASRGTRPSFGWPLLV-GRDLLKQGMRFTIGNGECINTWTDPWLPVHPPRPPR 727

BLAST of Lcy02g011970 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 103.2 bits (256), Expect = 3.7e-22
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0

Query: 161 EGSRGLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPSLT 220
           E   GLGFRD+  FNQA+LAKQS+RI+  P +LL+ +LR RY+     +   +G  PS  
Sbjct: 52  EDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYA 111

Query: 221 WRSIVWGRDLFVKGYRWKVGNGKHIRIGIDPWLKDNSIRCPI 263
           WRSI+ GR+L  +G    +G+G H ++ +D W+ D +   P+
Sbjct: 112 WRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Lcy02g011970 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 5.3e-21
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 0

Query: 160 WEGSRGLGFRDISLFNQAMLAKQSWRIVRNPQSLLATILRGRYYKDKDFLNAPLGNNPSL 219
           ++   G+GF+DI  FN A+L KQ WR++  P+SL+A + + RY+   D LNAPLG+ PS 
Sbjct: 50  YKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSF 109

Query: 220 TWRSIVWGRDLFVKGYRWKVGNGKHIRIGIDPWLKDN----SIRCPIAIPNRLEGA---- 279
            W+SI   +++  +G R  VGNG+ I I    WL       ++R     P          
Sbjct: 110 VWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSIL 169

Query: 280 RVSNLIKEDG-SWNESLIK 290
           +VS+LI E G  W + +I+
Sbjct: 170 KVSDLIDESGREWRKDVIE 188

BLAST of Lcy02g011970 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 79.3 bits (194), Expect = 5.7e-15
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 42  LINGVPQSTIKPSRGLRQGDPLSPYLFLICAEGWTSMLNREESLLNFKGLKINKLCPNIS 101
           +ING PQ  + PSRGLRQGDPLSPYLF++C E  + +  R +      G++++   P I+
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 102 HLFFAEDS 110
           HL FA+D+
Sbjct: 73  HLLFADDT 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P932955.1e-2142.16Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
P925558.0e-1447.06Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... [more]
P0C2F62.2e-0833.04Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
P113691.9e-0724.84LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... [more]
Q051182.1e-0628.87Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fra... [more]
Match NameE-valueIdentityDescription
A0A803PHB23.4e-6844.48Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PI641.4e-6640.12Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803P9969.3e-6637.30Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QQL51.0e-6437.13Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PEK81.8e-6439.68Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_013658605.12.5e-6545.58uncharacterized protein LOC106363406 [Brassica napus][more]
XP_030502375.15.2e-6334.41uncharacterized protein LOC115717530 [Cannabis sativa][more]
XP_015388020.12.6e-6239.74uncharacterized protein LOC107177951 [Citrus sinensis][more]
XP_030502418.19.9e-6234.16uncharacterized protein LOC115717574 [Cannabis sativa][more]
XP_010495165.19.9e-6242.12PREDICTED: uncharacterized protein LOC104772227 [Camelina sativa][more]
Match NameE-valueIdentityDescription
ATMG00310.13.7e-2242.16RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.15.3e-2136.69Ribonuclease H-like superfamily protein [more]
ATMG01250.15.7e-1547.06RNA-directed DNA polymerase (reverse transcriptase) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..147
e-value: 2.7E-17
score: 63.0
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..165
score: 10.802523
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 1..146
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 1..146
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 164..290
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 164..290

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g011970.1Lcy02g011970.1mRNA