Lcy02g010830 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g010830
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr02: 32152219 .. 32152724 (-)
RNA-Seq Expression	Lcy02g010830
Synteny	Lcy02g010830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCAATAAGAAGCTCCTAATATTTTTGGTAATTGCCTTATATCTTTTGCTTTTCCTTTCAACCTATGGGGCAGCGAGAATCTTGAATCCAAATGGTACATTTTCTTCTTCTTCTCCTCCCTTCGGCTTCTTTTTTTCTAACCAAAAGATTAATGAAAAGTTGATAATTAAGTTGGAACTTTTTTCAGGAAATATGAAGGGTCTGGAGATCAGGTCCATTATACTAGGACGAATTATTCGACGAGATTTGGCACATGGAGGAAATTATAGCCCTGGTCCATTATATACTAGGACAAATTATTCTACGAGATTTGGCATATGGAGGAAATTATATAGCCTTGAGAATCCGTAAGAAGATACAAGTCTACCTTTACTTTTGGTCTTTCTTTAAAACACCCTAAAAAGTTATCCAAAGTTAATATACAAGTTTTATTTCCTGTGTATTTGGAGATTATCTGGATAGGTTGTATCTCATTTTTGGTTGAAGCTTCTGTTTTTTAA

mRNA sequence

ATGGCATCCAATAAGAAGCTCCTAATATTTTTGGTAATTGCCTTATATCTTTTGCTTTTCCTTTCAACCTATGGGGCAGCGAGAATCTTGAATCCAAATGGAAATATGAAGGGTCTGGAGATCAGGTCCATTATACTAGGACGAATTATTCGACGAGATTTGGCACATGGAGGAAATTATAGCCCTGGTCCATTATATACTAGGACAAATTATTCTACGAGATTTGGCATATGGAGGAAATTATATAGCCTTGAGAATCCGTAAGAAGATACAAGTCTACCTTTACTTTTGGTCTTTCTTTAAAACACCCTAAAAAGTTATCCAAAGTTAATATACAAGTTTTATTTCCTGTGTATTTGGAGATTATCTGGATAGGTTGTATCTCATTTTTGGTTGAAGCTTCTGTTTTTTAA

Coding sequence (CDS)

ATGGCATCCAATAAGAAGCTCCTAATATTTTTGGTAATTGCCTTATATCTTTTGCTTTTCCTTTCAACCTATGGGGCAGCGAGAATCTTGAATCCAAATGGAAATATGAAGGGTCTGGAGATCAGGTCCATTATACTAGGACGAATTATTCGACGAGATTTGGCACATGGAGGAAATTATAGCCCTGGTCCATTATATACTAGGACAAATTATTCTACGAGATTTGGCATATGGAGGAAATTATATAGCCTTGAGAATCCGTAA

Protein sequence

MASNKKLLIFLVIALYLLLFLSTYGAARILNPNGNMKGLEIRSIILGRIIRRDLAHGGNYSPGPLYTRTNYSTRFGIWRKLYSLENP

Homology

[Close]

BLAST of Lcy02g010830 vs. ExPASy TrEMBL
Match: A0A0A0KL54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.5e-13
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MASNKKLLIFLVIALYLLLFLSTYGAARILNPNGNMKGLEIRSIILG-RIIRRDLAHGGN 60
          MAS KK LI L   LYL+LFLSTYGAARIL+ NG+MK  EI+ I++G RI+RRDLAHGGN
Sbjct: 4  MASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGGN 63

Query: 61 YSPG 64
          Y PG
Sbjct: 64 YGPG 67

[Close]

BLAST of Lcy02g010830 vs. NCBI nr
Match: KAG6605659.1 (hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-14
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MASNKKLLIFLVIALYLLLFLSTYGAARILNPNGNMKGLEIRSIILGRIIRRDLAHGGNY 60
          M SNKK LI LVI LYL+LFLS+YGAAR+  PNG+M   E++ I LGRI+RRDLA+GGNY
Sbjct: 1  MGSNKKHLIPLVIVLYLMLFLSSYGAARVFIPNGHMNAFEMKPITLGRIMRRDLAYGGNY 60

Query: 61 SPG 64
          SPG
Sbjct: 61 SPG 63

[Close]

BLAST of Lcy02g010830 vs. NCBI nr
Match: KAG7035570.1 (hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-14
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MASNKKLLIFLVIALYLLLFLSTYGAARILNPNGNMKGLEIRSIILGRIIRRDLAHGGNY 60
          M SNKK LI LVI LYL+LFLS+YGAAR+  PNG+M   E++ I LGRI+RRDLA+GGNY
Sbjct: 1  MGSNKKHLIPLVIVLYLMLFLSSYGAARVFIPNGHMNAFEMKPITLGRIMRRDLAYGGNY 60

Query: 61 SPG 64
          SPG
Sbjct: 61 SPG 63

[Close]

BLAST of Lcy02g010830 vs. NCBI nr
Match: KGN50358.1 (hypothetical protein Csa_000417 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 9.4e-13
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MASNKKLLIFLVIALYLLLFLSTYGAARILNPNGNMKGLEIRSIILG-RIIRRDLAHGGN 60
          MAS KK LI L   LYL+LFLSTYGAARIL+ NG+MK  EI+ I++G RI+RRDLAHGGN
Sbjct: 4  MASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGGN 63

Query: 61 YSPG 64
          Y PG
Sbjct: 64 YGPG 67

The following BLAST results are available for this feature:

BLAST of Lcy02g010830 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g010830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL54	4.5e-13	70.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1	[more]

BLAST of Lcy02g010830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605659.1	3.8e-14	69.84	hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035570.1	3.8e-14	69.84	hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN50358.1	9.4e-13	70.31	hypothetical protein Csa_000417 [Cucumis sativus]	[more]

BLAST of Lcy02g010830 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g010830.1	Lcy02g010830.1	mRNA