Lcy02g010720 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g010720
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr02: 31860541 .. 31860936 (+)
RNA-Seq Expression	Lcy02g010720
Synteny	Lcy02g010720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCAGTTATGTTTGAAAAGGAGCTAGGAGATTTAAACTTTCGGGATTTAGAGCTTTTCAACCAAGCTTTATTGGTAAAACAGGTGTGACGCTTATTTATGAACCCAACTCTATTGGTCTCCAAGGTTATAAAAGGACGTTACGCTAATCAGGAGTCTCTATTGCTCGCTCCAGTCAGAACAAAATGTTCAGTGTTCTGGAGGGGTTTTGTTTGGGCAAGAGAACTCTTGGTGAGTGGCATGCGAAAACGGATTGGGAATGGTAAATCCACCCGTTTATTCAAAGATCCATGGATTCCTAAGGAGAGCACTTTCAAACCATTACCAATTTCTGAAGGAATATCTCGGGAAAATGTGTTAGTGTCCGAATTTATCAGTCCAACGATGGGCTAG

mRNA sequence

ATGGACTCAGTTATGTTTGAAAAGGAGCTAGGAGATTTAAACTTTCGGGATTTAGAGCTTTTCAACCAAGCTTTATTGGTAAAACAGGTTATAAAAGGACGTTACGCTAATCAGGAGTCTCTATTGCTCGCTCCAGTCAGAACAAAATGTTCAGTGTTCTGGAGGGGTTTTGTTTGGGCAAGAGAACTCTTGGTGAGTGGCATGCGAAAACGGATTGGGAATGGTAAATCCACCCGTTTATTCAAAGATCCATGGATTCCTAAGGAGAGCACTTTCAAACCATTACCAATTTCTGAAGGAATATCTCGGGAAAATGTGTTAGTGTCCGAATTTATCAGTCCAACGATGGGCTAG

Coding sequence (CDS)

ATGGACTCAGTTATGTTTGAAAAGGAGCTAGGAGATTTAAACTTTCGGGATTTAGAGCTTTTCAACCAAGCTTTATTGGTAAAACAGGTTATAAAAGGACGTTACGCTAATCAGGAGTCTCTATTGCTCGCTCCAGTCAGAACAAAATGTTCAGTGTTCTGGAGGGGTTTTGTTTGGGCAAGAGAACTCTTGGTGAGTGGCATGCGAAAACGGATTGGGAATGGTAAATCCACCCGTTTATTCAAAGATCCATGGATTCCTAAGGAGAGCACTTTCAAACCATTACCAATTTCTGAAGGAATATCTCGGGAAAATGTGTTAGTGTCCGAATTTATCAGTCCAACGATGGGCTAG

Protein sequence

MDSVMFEKELGDLNFRDLELFNQALLVKQVIKGRYANQESLLLAPVRTKCSVFWRGFVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPLPISEGISRENVLVSEFISPTMG

Homology

[Close]

BLAST of Lcy02g010720 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-10
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 11  GDLNFRDLELFNQALLVKQ--------------VIKGRYANQESLLLAPVRTKCSVFWRG 70
           G L FRDL  FNQALL KQ              +++ RY    S++   V T+ S  WR 
Sbjct: 55  GGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRS 114

Query: 71  FVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPL 96
            +  RELL  G+ + IG+G  T+++ D WI  E+   PL
Sbjct: 115 IIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

[Close]

BLAST of Lcy02g010720 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 6    FEKELGDLNFRDLELFNQA--------------LLVKQVIKGRYANQESLLLAPVRTKCS 65
            + KE G LNFRDLE FNQA              LLV +V+K +Y    SLL A   +K S
Sbjct: 939  YPKECGGLNFRDLEGFNQALVAKHVWRFLQHPNLLVSKVLKHKYFKDTSLLQASNNSKSS 998

Query: 66   VFWRGFVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPLPISEG 101
             FW+GF+W R+LLV G+R R+GNG + + F DPW+P+ +TFKPL  + G
Sbjct: 999  YFWKGFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNG 1047

[Close]

BLAST of Lcy02g010720 vs. ExPASy TrEMBL
Match: A0A6J1BRN0 (uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004787 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 8   KELGDLNFRDLELFNQALLVKQ--------------VIKGRYANQESLLLAPVRTKCSVF 67
           KELG LNFRDLE FNQAL+ KQ              V+K +Y +   +L A      S F
Sbjct: 73  KELGGLNFRDLEGFNQALVAKQVWRVLQNPNILVSRVLKAKYFHDSLVLQATHLRNQSYF 132

Query: 68  WRGFVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPLPISEGISRENVLVSEFIS 115
           W+GF+W R+LL+ G+R R+GNG +  +F DPWIP+  +F+  PI+      +V V++ I+
Sbjct: 133 WKGFIWGRDLLIKGLRSRVGNGSTINIFSDPWIPRPYSFR--PITAPFGPYDVKVADLIN 191

[Close]

BLAST of Lcy02g010720 vs. ExPASy TrEMBL
Match: A0A1J6KPF6 (Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_31322 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.5e-16
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 11  GDLNFRDLELFNQALLVK--------------QVIKGRYANQESLLLAPVRTKCSVFWRG 70
           G L FRDL+ FN ALLVK               V+KG+Y  +ES L  P+    S  W+ 
Sbjct: 108 GGLGFRDLKAFNMALLVKLAWRILTKPDLLVSHVLKGKYFPKESFLQVPISKYTSWVWKS 167

Query: 71  FVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPLPISEGISRENVLVSEFI 113
            +W R+LL  G+R  + NGKS R+++DPW+P++++F PL +  G +  N+ VSE I
Sbjct: 168 ILWGRDLLSRGVRWNVSNGKSVRVWRDPWLPRDNSFYPLSMMSG-TATNMKVSELI 222

[Close]

BLAST of Lcy02g010720 vs. ExPASy TrEMBL
Match: A0A803NHG3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 8    KELGDLNFRDLELFNQALLVKQ--------------VIKGRYANQESLLLAPVRTKCSVF 67
            KE G L FRDLELFNQALL KQ              V+K  Y   +S+L A      S  
Sbjct: 1286 KEEGGLGFRDLELFNQALLAKQIWRCLRQPGSLCSKVLKASYFPHKSVLAAKCGAHASFV 1345

Query: 68   WRGFVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFK 94
            WR  VW +E+++ G R R+GNG+  R+ +DPW+P+ ++FK
Sbjct: 1346 WRSLVWGKEIILKGYRWRVGNGQQVRVLEDPWLPRPTSFK 1385

[Close]

BLAST of Lcy02g010720 vs. ExPASy TrEMBL
Match: A0A803QJV0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 8    KELGDLNFRDLELFNQALLVKQ--------------VIKGRYANQESLLLAPVRTKCSVF 67
            KE G L FRDLELFNQALL KQ              V+K  Y   +S+L A      S  
Sbjct: 1286 KEEGGLGFRDLELFNQALLAKQIWRCLRQPGSLCTKVLKASYFPNKSVLAAKCGAHASFV 1345

Query: 68   WRGFVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFK 94
            WR  VW +E+++ G R R+GNG+  R+ +DPW+P+ ++FK
Sbjct: 1346 WRSLVWGKEIILKGYRWRVGNGQQVRVLEDPWLPRPTSFK 1385

[Close]

BLAST of Lcy02g010720 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 6.3e-20
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 6    FEKELGDLNFRDLELFNQA--------------LLVKQVIKGRYANQESLLLAPVRTKCS 65
            + KE G LNFRDLE FNQA              LLV +V+K +Y    SLL A   +K S
Sbjct: 939  YPKECGGLNFRDLEGFNQALVAKHVWRFLQHPNLLVSKVLKHKYFKDTSLLQASNNSKSS 998

Query: 66   VFWRGFVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPLPISEG 101
             FW+GF+W R+LLV G+R R+GNG + + F DPW+P+ +TFKPL  + G
Sbjct: 999  YFWKGFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNG 1047

[Close]

BLAST of Lcy02g010720 vs. NCBI nr
Match: XP_022131662.1 (uncharacterized protein LOC111004787 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 3.4e-18
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 8   KELGDLNFRDLELFNQALLVKQ--------------VIKGRYANQESLLLAPVRTKCSVF 67
           KELG LNFRDLE FNQAL+ KQ              V+K +Y +   +L A      S F
Sbjct: 73  KELGGLNFRDLEGFNQALVAKQVWRVLQNPNILVSRVLKAKYFHDSLVLQATHLRNQSYF 132

Query: 68  WRGFVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPLPISEGISRENVLVSEFIS 115
           W+GF+W R+LL+ G+R R+GNG +  +F DPWIP+  +F+  PI+      +V V++ I+
Sbjct: 133 WKGFIWGRDLLIKGLRSRVGNGSTINIFSDPWIPRPYSFR--PITAPFGPYDVKVADLIN 191

[Close]

BLAST of Lcy02g010720 vs. NCBI nr
Match: XP_030505522.1 (uncharacterized protein LOC115720515 [Cannabis sativa])

HSP 1 Score: 97.8 bits (242), Expect = 6.5e-17
Identity = 54/121 (44.63%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 6   FEKELGDLNFRDLELFNQALLVK--------------QVIKGRYANQESLLLAPVRTKCS 65
           F K  G L FR    +NQALL K              QV+K RY  Q+S L A   +  S
Sbjct: 552 FSKRKGGLGFRRFVQYNQALLAKQAWRVLINPTSILAQVLKARYFPQQSFLEATESSHPS 611

Query: 66  VFWRGFVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPLPISEGISRENVLVSEF 113
             WRG VW +ELL+ G+R+RIGNG +TR+FKDPWIP+  +F  LPI++ +    ++VSE 
Sbjct: 612 QIWRGIVWGKELLIKGLRRRIGNGANTRVFKDPWIPRPPSF--LPITKEVG-NLMMVSEL 669

[Close]

BLAST of Lcy02g010720 vs. NCBI nr
Match: OIT26744.1 (putative mitochondrial protein [Nicotiana attenuata])

HSP 1 Score: 94.0 bits (232), Expect = 9.3e-16
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 11  GDLNFRDLELFNQALLVK--------------QVIKGRYANQESLLLAPVRTKCSVFWRG 70
           G L FRDL+ FN ALLVK               V+KG+Y  +ES L  P+    S  W+ 
Sbjct: 108 GGLGFRDLKAFNMALLVKLAWRILTKPDLLVSHVLKGKYFPKESFLQVPISKYTSWVWKS 167

Query: 71  FVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPLPISEGISRENVLVSEFI 113
            +W R+LL  G+R  + NGKS R+++DPW+P++++F PL +  G +  N+ VSE I
Sbjct: 168 ILWGRDLLSRGVRWNVSNGKSVRVWRDPWLPRDNSFYPLSMMSG-TATNMKVSELI 222

[Close]

BLAST of Lcy02g010720 vs. NCBI nr
Match: XP_030483444.1 (uncharacterized protein LOC115700033 [Cannabis sativa])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 20  LFNQALLVKQVIKGRYANQESLLLAPVRTKCSVFWRGFVWARELLVSGMRKRIGNGKSTR 79
           L N   ++ QV+K RY  Q+S L A   +  S  WRG VW +ELL+ G+R+RIGNG +TR
Sbjct: 322 LINPTCILAQVLKARYFPQQSFLEATESSHPSQIWRGIVWGKELLIKGLRRRIGNGANTR 381

Query: 80  LFKDPWIPKESTFKPLPISEGISRENVLVSEFI 113
           +FKDPWIP   +F  LPI++ +  + ++VSE I
Sbjct: 382 VFKDPWIPHPPSF--LPITKEVG-DLMMVSELI 411

[Close]

BLAST of Lcy02g010720 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 11  GDLNFRDLELFNQALLVKQ--------------VIKGRYANQESLLLAPVRTKCSVFWRG 70
           G L FRDL  FNQALL KQ              +++ RY    S++   V T+ S  WR 
Sbjct: 55  GGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRS 114

Query: 71  FVWARELLVSGMRKRIGNGKSTRLFKDPWIPKESTFKPL 96
            +  RELL  G+ + IG+G  T+++ D WI  E+   PL
Sbjct: 115 IIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

The following BLAST results are available for this feature:

BLAST of Lcy02g010720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	2.7e-10	37.37	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lcy02g010720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	3.0e-20	47.71	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1BRN0	1.7e-18	42.15	uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A1J6KPF6	4.5e-16	40.52	Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_31322 PE...	[more]
A0A803NHG3	1.5e-14	43.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803QJV0	1.5e-14	43.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lcy02g010720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	6.3e-20	47.71	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022131662.1	3.4e-18	42.15	uncharacterized protein LOC111004787 [Momordica charantia]	[more]
XP_030505522.1	6.5e-17	44.63	uncharacterized protein LOC115720515 [Cannabis sativa]	[more]
OIT26744.1	9.3e-16	40.52	putative mitochondrial protein [Nicotiana attenuata]	[more]
XP_030483444.1	1.3e-14	47.31	uncharacterized protein LOC115700033 [Cannabis sativa]	[more]

BLAST of Lcy02g010720 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00310.1	1.9e-11	37.37	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g010720.1	Lcy02g010720.1	mRNA