Lcy02g010280 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g010280
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	rRNA processing protein-related
Location	Chr02: 27895181 .. 27895678 (+)
RNA-Seq Expression	Lcy02g010280
Synteny	Lcy02g010280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGACAGATACTCACATGGAAAAAGTGAAAGGTCGGCTGCTGTCCGAACAGAGAAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAATTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAAGGGGAGATTGAATCTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGAGATGGACTTGTCCATTGAAGATGGAAAGGCATTTGAGAGGCCGGGGGTGTCTCCTGGTGATCGCTCGGGAGGGAAGGCAAGACATGGAAGCGGAGGAAAGGGGAAAAATCTGAAGAAGAAGAGAGATTTCAGGGATTCCAAGTTCGGATTCGGCGGGAGGAAAAGTTTGAAAAAGCAAAACACAGCTGAGACAACAAATGATATTAGGGGCTTCAACAATGGCAGTGTGTCAAGCGACAAAAGAAGGAAGAGGTCATAG

mRNA sequence

ATGGTGAAGACAGATACTCACATGGAAAAAGTGAAAGGTCGGCTGCTGTCCGAACAGAGAAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAATTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAAGGGGAGATTGAATCTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGAGATGGACTTGTCCATTGAAGATGGAAAGGCATTTGAGAGGCCGGGGGTGTCTCCTGGTGATCGCTCGGGAGGGAAGGCAAGACATGGAAGCGGAGGAAAGGGGAAAAATCTGAAGAAGAAGAGAGATTTCAGGGATTCCAAGTTCGGATTCGGCGGGAGGAAAAGTTTGAAAAAGCAAAACACAGCTGAGACAACAAATGATATTAGGGGCTTCAACAATGGCAGTGTGTCAAGCGACAAAAGAAGGAAGAGGTCATAG

Coding sequence (CDS)

ATGGTGAAGACAGATACTCACATGGAAAAAGTGAAAGGTCGGCTGCTGTCCGAACAGAGAAAGATGGAGGAAGCTGAGGAAAGAAGGAAGGCTAGAGAAGCAAAGAAATTAGCTAAAGAGATTCAAGCTCAGAAGCTAAAGGAGAGGGCTAAGCAGAAGAAAGGGGAGATTGAATCTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAGTGGTTTTGCTGGAGGTGATAAAGGTGGTGAGATGGACTTGTCCATTGAAGATGGAAAGGCATTTGAGAGGCCGGGGGTGTCTCCTGGTGATCGCTCGGGAGGGAAGGCAAGACATGGAAGCGGAGGAAAGGGGAAAAATCTGAAGAAGAAGAGAGATTTCAGGGATTCCAAGTTCGGATTCGGCGGGAGGAAAAGTTTGAAAAAGCAAAACACAGCTGAGACAACAAATGATATTAGGGGCTTCAACAATGGCAGTGTGTCAAGCGACAAAAGAAGGAAGAGGTCATAG

Protein sequence

MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESVKKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGDRSGGKARHGSGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS

Homology

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BLAST of Lcy02g010280 vs. ExPASy Swiss-Prot
Match: Q9LUJ5 (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.5e-43
Identity = 109/171 (63.74%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVK+D HMEKVK RLL E++++EE+EERRKAR+ K++AKE+Q+QK+KERAK+KK  IESV
Sbjct: 129 MVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKKDNIESV 188

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARHGSGGKG 120
           KKWRKQRQ+SGF+  DK GE +L  E GK+F+      RPGVSPGDRSGGK R  S    
Sbjct: 189 KKWRKQRQQSGFS--DKAGEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGRPTS---- 248

Query: 121 KNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR-GFNNGSVSSDKRRKR 165
           +   KKR+FRDSKFG GGRK L KQNTAETTND + GF  G  S +KR+KR
Sbjct: 249 RMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGKASGNKRQKR 293

[Close]

BLAST of Lcy02g010280 vs. ExPASy Swiss-Prot
Match: Q9I8J6 (Probable rRNA-processing protein EBP2 OS=Xenopus laevis OX=8355 GN=ebna1bp2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-08
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           M KTD HM+K++ +L  +Q  ME++E+ ++ R  +K  K++Q + L++R K+K   +  +
Sbjct: 141 MAKTDQHMQKIRHKLQLKQASMEKSEKAKQLRALRKYGKKVQVEVLQKRQKEKSAMVTQI 200

Query: 61  KKWRK-QRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGDRSGGKARHGSGGKGKNL-K 120
           KK++K    K  F  GD               + P  +P +++GG A   +  K KN   
Sbjct: 201 KKYQKGLSDKLDFLEGD---------------QTPKKTP-NKTGGSA---AAQKAKNTPS 260

Query: 121 KKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDK 161
            KR ++D KFGFGG+K   K NT  + ND+ GF  GSV+  K
Sbjct: 261 AKRRYKDQKFGFGGKKKGSKGNTKGSYNDVSGF-RGSVAHGK 282

[Close]

BLAST of Lcy02g010280 vs. ExPASy Swiss-Prot
Match: Q09958 (Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans OX=6239 GN=C18A3.3 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 59/162 (36.42%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           M K+DTHM+KV+ RLL  Q   E  E  R+ RE KK A ++Q + L  +  +KK   E+V
Sbjct: 165 MAKSDTHMQKVRKRLLGIQEMKERQEAFRRIREEKKFAVKVQKEVLAAKNTEKKNLAEAV 224

Query: 61  KKWRK--QRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGDRSGGKARHGSGGKGKN-- 120
           KK +K  ++Q        K   +D   +D  A   P  + GDR GG+   G GG G+   
Sbjct: 225 KKHKKGMKQQLEDMLNNVKRHGLD---QDDDA---PTGAFGDRLGGRGGAGRGGAGRGGS 284

Query: 121 ----LKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNG 155
                + KR  +  KFG+GG+K   K+N  E+ ND+ G   G
Sbjct: 285 MRNAGELKRKLKSDKFGYGGKKKGMKRNNKESFNDLFGAPRG 320

[Close]

BLAST of Lcy02g010280 vs. ExPASy Swiss-Prot
Match: Q9D903 (Probable rRNA-processing protein EBP2 OS=Mus musculus OX=10090 GN=Ebna1bp2 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 48/151 (31.79%), Postives = 88/151 (58.28%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           M K+D  M+K++ +L ++Q  ME++E+ ++ R  +K  K++Q + L++R ++K   + ++
Sbjct: 140 MAKSDQQMQKIRQKLQTKQAAMEKSEKAKQLRALRKYGKKVQTEVLQKRQREKAHMMNAI 199

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGDRSGGKARHGSGGKGKNLKKK 120
           KK++K     GF+      ++D    D K  ER       ++GGK +  S  KG N K++
Sbjct: 200 KKYQK-----GFS-----DKLDFLEGDQKPVERSA-----KAGGKGQQMS--KGPNAKRR 259

Query: 121 RDFRDSKFGFGGRKSLKKQNTAETTNDIRGF 152
             +++ KFGFGG+K   K NT E+ +D+  F
Sbjct: 260 --YKNQKFGFGGKKKGSKWNTKESYDDVSSF 271

[Close]

BLAST of Lcy02g010280 vs. ExPASy Swiss-Prot
Match: P36049 (rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.9e-05
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVK+D HM+K+KG+L+ E    +  EE R+ R+ KK  K++Q   L++R  +K+  +E +
Sbjct: 278 MVKSDEHMDKIKGKLIEEASDKKAREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKI 337

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFERPGVSPGDRSGGKARHGSGGKGKNLKKK 120
           K  + +R+ +     +    ++  +E GK F+R G   G R+   A++G GG  K  K+K
Sbjct: 338 KSLKNKRKHNEIDHSEFNVGVEEEVE-GKRFDR-GRPNGKRAAKNAKYGQGGM-KRFKRK 397

Query: 121 RDFRDSK--FGFGGRKSLKKQNTAETTNDIRGF 152
            D   S    GF  RK   K N    +   R F
Sbjct: 398 NDATSSADVSGFSSRKMKGKTNRPGKSRRARRF 427

[Close]

BLAST of Lcy02g010280 vs. ExPASy TrEMBL
Match: A0A6J1IZU9 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480644 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.4e-68
Identity = 153/171 (89.47%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESV
Sbjct: 130 MVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKEEIESV 189

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARHGSGGKG 120
           KKWRKQRQKSGFAGGDKGGEM+LS EDGKAFE      RPGVSPGDRSGGKARH +GGKG
Sbjct: 190 KKWRKQRQKSGFAGGDKGGEMELSFEDGKAFERSGGKKRPGVSPGDRSGGKARHRNGGKG 249

Query: 121 KNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           KNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFNN S+ S+KRRKRS
Sbjct: 250 KNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNDSLLSNKRRKRS 300

[Close]

BLAST of Lcy02g010280 vs. ExPASy TrEMBL
Match: A0A6J1DQA0 (probable rRNA-processing protein EBP2 homolog OS=Momordica charantia OX=3673 GN=LOC111022583 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.9e-67
Identity = 152/170 (89.41%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHMEKVKGRLL+EQRKMEEAEERRKAREAK+LAKEIQAQKLKERAKQKK EIESV
Sbjct: 129 MVKTDTHMEKVKGRLLAEQRKMEEAEERRKAREAKRLAKEIQAQKLKERAKQKKEEIESV 188

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPGVSPGDRSGGKARHGSGGKGK 120
           KKWRKQRQKSGFAGGDKGGEMDL+ EDGKAFE     RPGVSPGDRSGGKARHG GGKGK
Sbjct: 189 KKWRKQRQKSGFAGGDKGGEMDLAFEDGKAFERSGKKRPGVSPGDRSGGKARHG-GGKGK 248

Query: 121 NLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           N KKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR FN G++SS+K+RKRS
Sbjct: 249 NPKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRSFNKGTLSSNKKRKRS 297

[Close]

BLAST of Lcy02g010280 vs. ExPASy TrEMBL
Match: A0A6J1EEP4 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111433474 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 151/171 (88.30%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESV
Sbjct: 138 MVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKEEIESV 197

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARHGSGGKG 120
           KKWRKQRQKSGFAGGDKGG+M+LS EDGKAFE      RPGVSPGDRSGGKARH  GGKG
Sbjct: 198 KKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVSPGDRSGGKARHRDGGKG 257

Query: 121 KNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           KNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFN+ S+ S+KRRKRS
Sbjct: 258 KNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLLSNKRRKRS 308

[Close]

BLAST of Lcy02g010280 vs. ExPASy TrEMBL
Match: A0A6J1DTZ5 (probable rRNA-processing protein EBP2 homolog OS=Momordica charantia OX=3673 GN=LOC111023109 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 149/170 (87.65%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHMEKVKGRLL+EQRKMEEA+ERRKAREAK+LAKEIQAQKLKERAKQKK EIESV
Sbjct: 128 MVKTDTHMEKVKGRLLAEQRKMEEADERRKAREAKRLAKEIQAQKLKERAKQKKEEIESV 187

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPGVSPGDRSGGKARHGSGGKGK 120
           KKWRKQRQKSGFAGGDKGGEMDL+ EDGK FE     RPGVSPGDRSGGK RHG GGKGK
Sbjct: 188 KKWRKQRQKSGFAGGDKGGEMDLTFEDGKTFERSGKKRPGVSPGDRSGGKTRHGGGGKGK 247

Query: 121 NLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           N KKKRDFRDSKFGFGGRKSLKKQNTAETT+DIR FN GS+SS+K+RKRS
Sbjct: 248 NPKKKRDFRDSKFGFGGRKSLKKQNTAETTSDIRDFNKGSLSSNKKRKRS 297

[Close]

BLAST of Lcy02g010280 vs. ExPASy TrEMBL
Match: A0A5D3DB33 (Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001370 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQK KERAKQKK EIESV
Sbjct: 143 MVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKERAKQKKEEIESV 202

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARH--GSGG 120
           KKWRKQRQK+ FAGGDKGG+MD S EDGK FE      RPGVSPGDRSGGKARH  G GG
Sbjct: 203 KKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRSGGKARHGGGGGG 262

Query: 121 KGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           KGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGS+S++KRRK+S
Sbjct: 263 KGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSLSNNKRRKKS 315

[Close]

BLAST of Lcy02g010280 vs. NCBI nr
Match: XP_022981565.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 153/171 (89.47%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESV
Sbjct: 130 MVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKEEIESV 189

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARHGSGGKG 120
           KKWRKQRQKSGFAGGDKGGEM+LS EDGKAFE      RPGVSPGDRSGGKARH +GGKG
Sbjct: 190 KKWRKQRQKSGFAGGDKGGEMELSFEDGKAFERSGGKKRPGVSPGDRSGGKARHRNGGKG 249

Query: 121 KNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           KNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFNN S+ S+KRRKRS
Sbjct: 250 KNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNDSLLSNKRRKRS 300

[Close]

BLAST of Lcy02g010280 vs. NCBI nr
Match: KAG7037255.1 (putative rRNA-processing protein EBP2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 5.6e-67
Identity = 152/171 (88.89%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESV
Sbjct: 128 MVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKEEIESV 187

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARHGSGGKG 120
           KKWRKQRQKSGFAGGDKGG+M+LS EDGKAFE      RPGVSPGDRSGGKARH  GGKG
Sbjct: 188 KKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVSPGDRSGGKARHRDGGKG 247

Query: 121 KNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           KNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFNN S+ S+KRRKRS
Sbjct: 248 KNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNDSLLSNKRRKRS 298

[Close]

BLAST of Lcy02g010280 vs. NCBI nr
Match: XP_038876320.1 (probable rRNA-processing protein EBP2 homolog [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 150/171 (87.72%), Postives = 156/171 (91.23%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQK KERAKQKK EIESV
Sbjct: 131 MVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKERAKQKKEEIESV 190

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARHGSGGKG 120
           KKWRKQRQK+GFAGGDKGG+MD S EDGK FE      RPGVSPGDR+GGKARHG GGKG
Sbjct: 191 KKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRTGGKARHGGGGKG 250

Query: 121 KNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           KN KKKRDFRDSKFGFGGRKSL KQNTAETTNDI GFNNGS+SS+KRRKRS
Sbjct: 251 KNPKKKRDFRDSKFGFGGRKSLNKQNTAETTNDISGFNNGSLSSNKRRKRS 301

[Close]

BLAST of Lcy02g010280 vs. NCBI nr
Match: XP_022155439.1 (probable rRNA-processing protein EBP2 homolog [Momordica charantia])

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 152/170 (89.41%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHMEKVKGRLL+EQRKMEEAEERRKAREAK+LAKEIQAQKLKERAKQKK EIESV
Sbjct: 129 MVKTDTHMEKVKGRLLAEQRKMEEAEERRKAREAKRLAKEIQAQKLKERAKQKKEEIESV 188

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE-----RPGVSPGDRSGGKARHGSGGKGK 120
           KKWRKQRQKSGFAGGDKGGEMDL+ EDGKAFE     RPGVSPGDRSGGKARHG GGKGK
Sbjct: 189 KKWRKQRQKSGFAGGDKGGEMDLAFEDGKAFERSGKKRPGVSPGDRSGGKARHG-GGKGK 248

Query: 121 NLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           N KKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR FN G++SS+K+RKRS
Sbjct: 249 NPKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRSFNKGTLSSNKKRKRS 297

[Close]

BLAST of Lcy02g010280 vs. NCBI nr
Match: XP_022926294.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita moschata])

HSP 1 Score: 262.7 bits (670), Expect = 2.1e-66
Identity = 151/171 (88.30%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKK EIESV
Sbjct: 138 MVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKEEIESV 197

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARHGSGGKG 120
           KKWRKQRQKSGFAGGDKGG+M+LS EDGKAFE      RPGVSPGDRSGGKARH  GGKG
Sbjct: 198 KKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVSPGDRSGGKARHRDGGKG 257

Query: 121 KNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSVSSDKRRKRS 166
           KNLKKK+DFRDSKFGFGGRKSLKKQNTAETTNDIRGFN+ S+ S+KRRKRS
Sbjct: 258 KNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLLSNKRRKRS 308

[Close]

BLAST of Lcy02g010280 vs. TAIR 10
Match: AT3G22660.1 (rRNA processing protein-related )

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-44
Identity = 109/171 (63.74%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 1   MVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKLKERAKQKKGEIESV 60
           MVK+D HMEKVK RLL E++++EE+EERRKAR+ K++AKE+Q+QK+KERAK+KK  IESV
Sbjct: 129 MVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKKDNIESV 188

Query: 61  KKWRKQRQKSGFAGGDKGGEMDLSIEDGKAFE------RPGVSPGDRSGGKARHGSGGKG 120
           KKWRKQRQ+SGF+  DK GE +L  E GK+F+      RPGVSPGDRSGGK R  S    
Sbjct: 189 KKWRKQRQQSGFS--DKAGEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGRPTS---- 248

Query: 121 KNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIR-GFNNGSVSSDKRRKR 165
           +   KKR+FRDSKFG GGRK L KQNTAETTND + GF  G  S +KR+KR
Sbjct: 249 RMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGKASGNKRQKR 293

The following BLAST results are available for this feature:

BLAST of Lcy02g010280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ5	3.5e-43	63.74	Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9I8J6	8.0e-08	34.57	Probable rRNA-processing protein EBP2 OS=Xenopus laevis OX=8355 GN=ebna1bp2 PE=2...	[more]
Q09958	1.2e-06	36.42	Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans OX=6239 ...	[more]
Q9D903	1.2e-06	31.79	Probable rRNA-processing protein EBP2 OS=Mus musculus OX=10090 GN=Ebna1bp2 PE=2 ...	[more]
P36049	2.9e-05	32.68	rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Lcy02g010280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IZU9	9.4e-68	89.47	probable rRNA-processing protein EBP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1DQA0	7.9e-67	89.41	probable rRNA-processing protein EBP2 homolog OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1EEP4	1.0e-66	88.30	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1DTZ5	1.4e-66	87.65	probable rRNA-processing protein EBP2 homolog OS=Momordica charantia OX=3673 GN=...	[more]
A0A5D3DB33	1.8e-66	87.28	Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa O...	[more]

BLAST of Lcy02g010280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981565.1	1.9e-67	89.47	probable rRNA-processing protein EBP2 homolog [Cucurbita maxima]	[more]
KAG7037255.1	5.6e-67	88.89	putative rRNA-processing protein EBP2-like protein, partial [Cucurbita argyrospe...	[more]
XP_038876320.1	1.3e-66	87.72	probable rRNA-processing protein EBP2 homolog [Benincasa hispida]	[more]
XP_022155439.1	1.6e-66	89.41	probable rRNA-processing protein EBP2 homolog [Momordica charantia]	[more]
XP_022926294.1	2.1e-66	88.30	probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]	[more]

BLAST of Lcy02g010280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22660.1	2.5e-44	63.74	rRNA processing protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..71
None	No IPR available	PANTHER	PTHR13028:SF2	BNAA01G24550D PROTEIN	coord: 1..164
IPR008610	Eukaryotic rRNA processing	PFAM	PF05890	Ebp2	coord: 1..161 e-value: 9.1E-39 score: 133.6
IPR008610	Eukaryotic rRNA processing	PANTHER	PTHR13028	RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED	coord: 1..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g010280.1	Lcy02g010280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0034399	nuclear periphery
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor