Lcy02g009930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g009930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	mucin-2-like isoform X1
Location	Chr02: 26325683 .. 26326559 (-)
RNA-Seq Expression	Lcy02g009930
Synteny	Lcy02g009930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCACTGCTCCACATATGAATGCTCAGAAAGAGACACCACTTGTCCAACCTCTCTCACAGTTACAGGTGTTTTTCCCTAAAAACTTTTCATCATAGAAAGAATCCAAATTGATGTGAGAATCTTATTTTCCTTTGTCTAATCTCTAAACTCTACAATGACCATTTAATTAGCTCTTGATTCTCTTTCATGGTTTATCTCACTCCACATATATCACGAAAGTATCCATTGAATCTCAGTCTCTCTGTACACTTAATTTAAACTCTCTGTTGTAACTTGTAACTTTCTGCCAGGCTTCAAGCAATTCAGAGGCAACAAAAAGAAACAATGGAATTGAGAAATCTCCAACTACAAAACCAAAAATACCATCCAGGTCCATCACTCCCAGTCATAGACCACGCATCAATTCATCAATTGAACCCAAGAACACTAAAAGAACAACAATTCCATCTCCAAACCCGGACCAAAGAAAATCCCCAATCCCATCTCCAATGGGTCCGCAGATCCCCCCTCCAAATCGAGTCTCTCCTCCGTAATACGGCCCCATCATCACCCTCCGCATCGGCACCCACCCCGCCGTCTTCATCGCCGACCGCTCCATCGCCTACAAGGCCCTCGTCCTCAACGGCGCTCTCTTCGCCGACCGTCCGCCGCCCCTTCCAGTCAGCAAGATCGCCTCCAGCAACCAGCACAACATCAACACCGCCTCCTACGACTCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCTCGGGTCAAGTCCTACGCTCGTGCTCGCAAGTGGGTTTTGGACATTCTTCTCAAGTCCTACGCTCGTGCTCACAAGAAAAAGGAGTAGGAAGCCAGAAAAATGA

mRNA sequence

ATGGAAGCCACTGCTCCACATATGAATGCTCAGAAAGAGACACCACTTGTCCAACCTCTCTCACAGTTACAGGCTTCAAGCAATTCAGAGGCAACAAAAAGAAACAATGGAATTGAGAAATCTCCAACTACAAAACCAAAAATACCATCCAGATCCCCCCTCCAAATCGAGTCTCTCCTCCGTAATACGGCCCCATCATCACCCTCCGCATCGGCACCCACCCCGCCGTCTTCATCGCCGACCGCTCCATCGCCTACAAGGCCCTCGTCCTCAACGGCGCTCTCTTCGCCGACCGTCCGCCGCCCCTTCCAGTCAGCAAGATCGCCTCCAGCAACCAGCACAACATCAACACCGCCTCCTACGACTCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCTCGGGTCAAGTCCTACGCTCGTGCTCGCAAGTGGGTTTTGGACATTCTTCTCAAGTCCTACGCTCGTGCTCACAAGAAAAAGGAGTAGGAAGCCAGAAAAATGA

Coding sequence (CDS)

ATGGAAGCCACTGCTCCACATATGAATGCTCAGAAAGAGACACCACTTGTCCAACCTCTCTCACAGTTACAGGCTTCAAGCAATTCAGAGGCAACAAAAAGAAACAATGGAATTGAGAAATCTCCAACTACAAAACCAAAAATACCATCCAGATCCCCCCTCCAAATCGAGTCTCTCCTCCGTAATACGGCCCCATCATCACCCTCCGCATCGGCACCCACCCCGCCGTCTTCATCGCCGACCGCTCCATCGCCTACAAGGCCCTCGTCCTCAACGGCGCTCTCTTCGCCGACCGTCCGCCGCCCCTTCCAGTCAGCAAGATCGCCTCCAGCAACCAGCACAACATCAACACCGCCTCCTACGACTCACTCTGGCGCCTCCTCCGCCGCAATCTCACTTCCCAAATCCTCCATCCTTCTCGGGTCAAGTCCTACGCTCGTGCTCGCAAGTGGGTTTTGGACATTCTTCTCAAGTCCTACGCTCGTGCTCACAAGAAAAAGGAGTAGGAAGCCAGAAAAATGA

Protein sequence

MEATAPHMNAQKETPLVQPLSQLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIESLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRRPFQSARSPPATSTTSTPPPTTHSGASSAAISLPKSSILLGSSPTLVLASGFWTFFSSPTLVLTRKRSRKPEK

Homology

[Close]

BLAST of Lcy02g009930 vs. ExPASy TrEMBL
Match: A0A0A0KJQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G141190 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.7e-07
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MEATAP-HMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIE 60
           MEATAP H NAQKETPLVQPLS  Q QASSNSE+TK+++GIEKSP TK KIPSRS     
Sbjct: 102 MEATAPSHKNAQKETPLVQPLSQPQSQASSNSESTKKSSGIEKSPITKAKIPSRSITPSN 161

Query: 61  SLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
               N++    +    T PS     P+P      T+    TV+R
Sbjct: 162 RPRINSSIDPKNTKRTTNPS-----PNPNHRIDQTSQIDLTVKR 200

[Close]

BLAST of Lcy02g009930 vs. ExPASy TrEMBL
Match: A0A6J1ESX0 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111435706 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 50/110 (45.45%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 1   MEATAPHMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIES 60
           MEA APHM AQKET  +Q LS  Q QAS+NSE+TKR+NGIEKSPTT P+IPSRS      
Sbjct: 103 MEAIAPHMKAQKETRFLQLLSQPQSQASNNSESTKRSNGIEKSPTTNPRIPSRS------ 162

Query: 61  LLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRRPFQSARS 109
               T    P  ++ T P ++    +P +  S  + + PT++R     +S
Sbjct: 163 ---ITPSYKPRINSSTEPKNTQRITNPNQRISQASSTDPTIKRNNNKTKS 203

[Close]

BLAST of Lcy02g009930 vs. ExPASy TrEMBL
Match: A0A5D3C2G1 (Mucin-2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001150 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MEATA-PHMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIE 60
           MEATA P  NA +ETPL+QPLS  Q QASSNSE+TK+++GIEKSP  K K+PSRS     
Sbjct: 103 MEATAPPSHNAHQETPLLQPLSQPQSQASSNSESTKKSSGIEKSPIIKAKVPSRSTTPSH 162

Query: 61  SLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
               N++    +    T PS     P+P++    T+    T++R
Sbjct: 163 RPRINSSIDPKNTKRTTNPS-----PNPSQRIDQTSQIDSTIKR 201

[Close]

BLAST of Lcy02g009930 vs. ExPASy TrEMBL
Match: A0A1S3AUS5 (mucin-2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482898 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MEATA-PHMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIE 60
           MEATA P  NA +ETPL+QPLS  Q QASSNSE+TK+++GIEKSP  K K+PSRS     
Sbjct: 103 MEATAPPSHNAHQETPLLQPLSQPQSQASSNSESTKKSSGIEKSPIIKAKVPSRSTTPSH 162

Query: 61  SLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
               N++    +    T PS     P+P++    T+    T++R
Sbjct: 163 RPRINSSIDPKNTKRTTNPS-----PNPSQRIDQTSQIDSTIKR 201

[Close]

BLAST of Lcy02g009930 vs. ExPASy TrEMBL
Match: A0A1S3AUR3 (mucin-2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482898 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   MEATA-PHMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIE 60
           MEATA P  NA +ETPL+QPLS  Q QASSNSE+TK+++GIEKSP  K K+PSRS     
Sbjct: 103 MEATAPPSHNAHQETPLLQPLSQPQSQASSNSESTKKSSGIEKSPIIKAKVPSRSTTPSH 162

Query: 61  SLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
               N++    +    T PS     P+P++    T+    T++R
Sbjct: 163 RPRINSSIDPKNTKRTTNPS-----PNPSQRIDQTSQIDSTIKR 201

[Close]

BLAST of Lcy02g009930 vs. NCBI nr
Match: XP_038907224.1 (BUD13 homolog [Benincasa hispida])

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-08
Identity = 55/107 (51.40%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 1   MEATAP-HMNAQKETPLVQPLSQL-----QASSNSEATKRNNGIEKSPTTKPKIPSRSPL 60
           MEATAP H NAQKETPLVQPLSQ      QASSNSE+TK++N IEKSPTTKPKIPSRS  
Sbjct: 128 MEATAPSHRNAQKETPLVQPLSQPQSQSGQASSNSESTKKSNVIEKSPTTKPKIPSRSIT 187

Query: 61  QIESLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
                  N++    +    T PS     P+P +  +  +   PT++R
Sbjct: 188 PSHRPRINSSIEPKNTKRTTTPS-----PNPIQRINQASSIDPTIKR 229

[Close]

BLAST of Lcy02g009930 vs. NCBI nr
Match: XP_031740888.1 (serine/arginine repetitive matrix protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MEATAP-HMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIE 60
           MEATAP H NAQKETPLVQPLS  Q QASSNSE+TK+++GIEKSP TK KIPSRS     
Sbjct: 107 MEATAPSHKNAQKETPLVQPLSQPQSQASSNSESTKKSSGIEKSPITKAKIPSRSITPSN 166

Query: 61  SLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
               N++    +    T PS     P+P      T+    TV+R
Sbjct: 167 RPRINSSIDPKNTKRTTNPS-----PNPNHRIDQTSQIDLTVKR 205

[Close]

BLAST of Lcy02g009930 vs. NCBI nr
Match: XP_031740890.1 (serine/arginine repetitive matrix protein 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MEATAP-HMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIE 60
           MEATAP H NAQKETPLVQPLS  Q QASSNSE+TK+++GIEKSP TK KIPSRS     
Sbjct: 102 MEATAPSHKNAQKETPLVQPLSQPQSQASSNSESTKKSSGIEKSPITKAKIPSRSITPSN 161

Query: 61  SLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
               N++    +    T PS     P+P      T+    TV+R
Sbjct: 162 RPRINSSIDPKNTKRTTNPS-----PNPNHRIDQTSQIDLTVKR 200

[Close]

BLAST of Lcy02g009930 vs. NCBI nr
Match: KAE8647819.1 (hypothetical protein Csa_000271 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MEATAP-HMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIE 60
           MEATAP H NAQKETPLVQPLS  Q QASSNSE+TK+++GIEKSP TK KIPSRS     
Sbjct: 1   MEATAPSHKNAQKETPLVQPLSQPQSQASSNSESTKKSSGIEKSPITKAKIPSRSITPSN 60

Query: 61  SLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
               N++    +    T PS     P+P      T+    TV+R
Sbjct: 61  RPRINSSIDPKNTKRTTNPS-----PNPNHRIDQTSQIDLTVKR 99

[Close]

BLAST of Lcy02g009930 vs. NCBI nr
Match: XP_031740889.1 (serine/arginine repetitive matrix protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 1   MEATAP-HMNAQKETPLVQPLS--QLQASSNSEATKRNNGIEKSPTTKPKIPSRSPLQIE 60
           MEATAP H NAQKETPLVQPLS  Q QASSNSE+TK+++GIEKSP TK KIPSRS     
Sbjct: 107 MEATAPSHKNAQKETPLVQPLSQPQSQASSNSESTKKSSGIEKSPITKAKIPSRSITPSN 166

Query: 61  SLLRNTAPSSPSASAPTPPSSSPTAPSPTRPSSSTALSSPTVRR 102
               N++    +    T PS     P+P      T+    TV+R
Sbjct: 167 RPRINSSIDPKNTKRTTNPS-----PNPNHRIDQTSQIDLTVKR 205

The following BLAST results are available for this feature:

BLAST of Lcy02g009930 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g009930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJQ3	5.7e-07	51.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G141190 PE=4 SV=1	[more]
A0A6J1ESX0	2.2e-06	45.45	Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111435706 PE=4 SV=1	[more]
A0A5D3C2G1	3.4e-04	45.19	Mucin-2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AUS5	3.4e-04	45.19	mucin-2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482898 PE=4 SV=1	[more]
A0A1S3AUR3	3.4e-04	45.19	mucin-2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482898 PE=4 SV=1	[more]

BLAST of Lcy02g009930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907224.1	4.8e-08	51.40	BUD13 homolog [Benincasa hispida]	[more]
XP_031740888.1	1.2e-06	51.92	serine/arginine repetitive matrix protein 1 isoform X1 [Cucumis sativus]	[more]
XP_031740890.1	1.2e-06	51.92	serine/arginine repetitive matrix protein 1 isoform X3 [Cucumis sativus]	[more]
KAE8647819.1	1.2e-06	51.92	hypothetical protein Csa_000271 [Cucumis sativus]	[more]
XP_031740889.1	1.2e-06	51.92	serine/arginine repetitive matrix protein 1 isoform X2 [Cucumis sativus]	[more]

BLAST of Lcy02g009930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g009930.1	Lcy02g009930.1	mRNA