Lcy02g009100 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g009100
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase
Location	Chr02: 16958017 .. 16958840 (-)
RNA-Seq Expression	Lcy02g009100
Synteny	Lcy02g009100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGCTGAGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGGCAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGATTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTATTTCATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAAATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATTCGTTTAAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATCCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCTACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTCTTTCAAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAGCCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAG

mRNA sequence

ATGAGCAAGCTGAGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGGCAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCTACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAGCCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAG

Coding sequence (CDS)

ATGAGCAAGCTGAGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGGCAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCTACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAGCCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAG

Protein sequence

MSKLSYIPLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYVERFPWIPLCGVSYRMFYIYD

Homology

[Close]

BLAST of Lcy02g009100 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.7e-12
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 9  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY 59
          LSTLSVLR NDAVVEIELPVPDTLPTS ESS S+SSYF +QVMSGLH V+
Sbjct: 21 LSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTNQVMSGLHLVF 70

[Close]

BLAST of Lcy02g009100 vs. ExPASy TrEMBL
Match: A0A5D3DE96 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00570 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 9   LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV 60
           LSTLSVLR NDAVVEIELPVPD LPTSAESS S+SSYF +QVMSGL+ VYV
Sbjct: 116 LSTLSVLRDNDAVVEIELPVPDRLPTSAESSASNSSYFTNQVMSGLYLVYV 166

[Close]

BLAST of Lcy02g009100 vs. ExPASy TrEMBL
Match: A0A5A7U9T8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003970 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 8  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV 60
          PLSTLSVLR NDAVVEIEL VPDTLPTSAESS S+SSYF +QV+SGLH V V
Sbjct: 20 PLSTLSVLRDNDAVVEIELLVPDTLPTSAESSGSNSSYFTNQVISGLHLVNV 71

[Close]

BLAST of Lcy02g009100 vs. ExPASy TrEMBL
Match: A0A5D3CPH9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00230 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 8  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV 60
          PLSTLSVLR NDAVVEIEL VPDTLPTSAESS S+SSYF +QV+SGLH V V
Sbjct: 20 PLSTLSVLRDNDAVVEIELLVPDTLPTSAESSGSNSSYFTNQVISGLHLVNV 71

[Close]

BLAST of Lcy02g009100 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.6e-11
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   MSKLSYIPLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY 59
           + K    PLST SVL  NDAVVEIEL VPDTLPTSAES  S+SSYF +QVMSGLH V+
Sbjct: 567 LDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLVF 624

[Close]

BLAST of Lcy02g009100 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 5.5e-12
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 9  LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY 59
          LSTLSVLR NDAVVEIELPVPDTLPTS ESS S+SSYF +QVMSGLH V+
Sbjct: 21 LSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTNQVMSGLHLVF 70

[Close]

BLAST of Lcy02g009100 vs. NCBI nr
Match: TYK21916.1 (hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 7.2e-12
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 9   LSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV 60
           LSTLSVLR NDAVVEIELPVPD LPTSAESS S+SSYF +QVMSGL+ VYV
Sbjct: 116 LSTLSVLRDNDAVVEIELPVPDRLPTSAESSASNSSYFTNQVMSGLYLVYV 166

[Close]

BLAST of Lcy02g009100 vs. NCBI nr
Match: KAA0051940.1 (hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 8  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV 60
          PLSTLSVLR NDAVVEIEL VPDTLPTSAESS S+SSYF +QV+SGLH V V
Sbjct: 20 PLSTLSVLRDNDAVVEIELLVPDTLPTSAESSGSNSSYFTNQVISGLHLVNV 71

[Close]

BLAST of Lcy02g009100 vs. NCBI nr
Match: TYK12219.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 8  PLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVYV 60
          PLSTLSVLR NDAVVEIEL VPDTLPTSAESS S+SSYF +QV+SGLH V V
Sbjct: 20 PLSTLSVLRDNDAVVEIELLVPDTLPTSAESSGSNSSYFTNQVISGLHLVNV 71

[Close]

BLAST of Lcy02g009100 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1   MSKLSYIPLSTLSVLRGNDAVVEIELPVPDTLPTSAESSRSSSSYFPSQVMSGLHHVY 59
           + K    PLST SVL  NDAVVEIEL VPDTLPTSAES  S+SSYF +QVMSGLH V+
Sbjct: 567 LDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFTNQVMSGLHLVF 624

The following BLAST results are available for this feature:

BLAST of Lcy02g009100 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g009100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BMJ4	2.7e-12	84.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DE96	3.5e-12	84.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9T8	1.3e-11	82.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CPH9	1.3e-11	82.69	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VD33	6.6e-11	70.69	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Lcy02g009100 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01041.1	5.5e-12	84.00	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]
TYK21916.1	7.2e-12	84.31	hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]	[more]
KAA0051940.1	2.7e-11	82.69	hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]	[more]
TYK12219.1	2.7e-11	82.69	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064296.1	1.4e-10	70.69	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Lcy02g009100 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g009100.1	Lcy02g009100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005488	binding