Lcy02g008620 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g008620
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionBED-type domain-containing protein
LocationChr02: 13694377 .. 13695273 (+)
RNA-Seq ExpressionLcy02g008620
SyntenyLcy02g008620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCTGAGTAGTGTGGCGCCAGATAATTGGATCTGGCATTTTGAGAAGCATGGTCGATATACTATTAGGAGTGGCTACAAGGCTTATATGATGCATAAGTTAGAGGGCTCCCCGTTTGATGCAGGTCGATTGAAGAAATGGTGGAAAGTTCTTTGGTCCCTTAAGTTGCCGACAAAAATAAAACACTTCATATGGCGTGCTTTCCACAATTGCATCCCAACTAAAGTCAATCTTATCAATCATCATGTCGATGCTAATGACCGGTGTCCTTTATGTCATAAATACCCGGAGATGACAGACCATGCGTTATTTCGATGTTCTAGGACCAAGATGATGTGGAGACAGTTACATAGGTCAAATATTATTGAAAATGTTAATTTCCCATCTGTACAGGACTAGTTCTTGTCTTTCTTAGAGTCAGATCTTGGCTATTGTCTTGATTGGATTTGTGTGGGAGCGTGGGCTATTTGGAATGATCGGAACAGTGTGAACCATGGGAGAGCAATTCCGGGCCTAGATGAGAAATGTGATTGGATCCATCGTTATATTCAGGAGTACAAGCAGGTTAATTTGGGTAATCTAGGGCCAAGCGTTTCTAATGGGAGGCACTGCATTAGAAGTGAGGTTGTTAACTTGATTGTTATTCATGTTGATGCGGCGTGTGATGATAAGTGCAGGGTGATTGGTTTTGGGGCCGTCTTTCGAAATAGTAAGGGGTTGGTGGCAGCAGTACATGGCCAATCCATCTTTGTTATCCCCTTTGTGTGCGGAAGCAAAAGCGATGCTAGAAAGTCTTCGTCTTGCCGAGAGATTGGATATAACAAATATAGTTATTCTATCCGACTCTCTGGGTCTGATCTCAATGCTCAAGGATCGGGTGTTTGCAACTGTTGA

mRNA sequence

ATGCCCCTGAGTAGTGTGGCGCCAGATAATTGGATCTGGCATTTTGAGAAGCATGGTCGATATACTATTAGGAGTGGCTACAAGGCTTATATGATGCATAAGTTAGAGGGCTCCCCGTTTGATGCAGAGTCAGATCTTGGCTATTGTCTTGATTGGATTTGTGTGGGAGCGTGGGCTATTTGGAATGATCGGAACAGTGTGAACCATGGGAGAGCAATTCCGGGCCTAGATGAGAAATGTGATTGGATCCATCGTTATATTCAGGAGTACAAGCAGGTTAATTTGGGTAATCTAGGGCCAAGCGTTTCTAATGGGAGGCACTGCATTAGAAGTGAGGTTGTTAACTTGATTGTTATTCATGTTGATGCGGCGTGTGATGATAAGTGCAGGGTGATTGGTTTTGGGGCCGTCTTTCGAAATAGTAAGGGGTTGGTGGCAGCAGTACATGGCCAATCCATCTTTGTTATCCCCTTTGTGTGCGGAAGCAAAAGCGATGCTAGAAAGTCTTCGTCTTGCCGAGAGATTGGATATAACAAATATAGTTATTCTATCCGACTCTCTGGGTCTGATCTCAATGCTCAAGGATCGGGTGTTTGCAACTGTTGA

Coding sequence (CDS)

ATGCCCCTGAGTAGTGTGGCGCCAGATAATTGGATCTGGCATTTTGAGAAGCATGGTCGATATACTATTAGGAGTGGCTACAAGGCTTATATGATGCATAAGTTAGAGGGCTCCCCGTTTGATGCAGAGTCAGATCTTGGCTATTGTCTTGATTGGATTTGTGTGGGAGCGTGGGCTATTTGGAATGATCGGAACAGTGTGAACCATGGGAGAGCAATTCCGGGCCTAGATGAGAAATGTGATTGGATCCATCGTTATATTCAGGAGTACAAGCAGGTTAATTTGGGTAATCTAGGGCCAAGCGTTTCTAATGGGAGGCACTGCATTAGAAGTGAGGTTGTTAACTTGATTGTTATTCATGTTGATGCGGCGTGTGATGATAAGTGCAGGGTGATTGGTTTTGGGGCCGTCTTTCGAAATAGTAAGGGGTTGGTGGCAGCAGTACATGGCCAATCCATCTTTGTTATCCCCTTTGTGTGCGGAAGCAAAAGCGATGCTAGAAAGTCTTCGTCTTGCCGAGAGATTGGATATAACAAATATAGTTATTCTATCCGACTCTCTGGGTCTGATCTCAATGCTCAAGGATCGGGTGTTTGCAACTGTTGA

Protein sequence

MPLSSVAPDNWIWHFEKHGRYTIRSGYKAYMMHKLEGSPFDAESDLGYCLDWICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEYKQVNLGNLGPSVSNGRHCIRSEVVNLIVIHVDAACDDKCRVIGFGAVFRNSKGLVAAVHGQSIFVIPFVCGSKSDARKSSSCREIGYNKYSYSIRLSGSDLNAQGSGVCNC
Homology
BLAST of Lcy02g008620 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 41/110 (37.27%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 51  DWICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEYKQVNLGNLG------PSVSN 110
           D + VG WAIWNDRN++   R IP    + DWI  Y+++++  ++ +LG       + SN
Sbjct: 86  DLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSN 145

Query: 111 GR---HCIRSEVVNLIVIHVDAACDDKCRVIGFGAVFRNSKG--LVAAVH 150
            R   +         I I+VDAAC       G G V RN KG  L AA H
Sbjct: 146 DRTIENYWSPPPAGWIKINVDAACKKHQFRTGIGIVCRNEKGQILAAASH 195

BLAST of Lcy02g008620 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 50   LDWICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEYKQVNLGNLGP-SVSNGRHC 109
            L+   +  W IWNDRNS+ HG+ +  ++ KC+W+  ++  + Q  + N  P + SN R  
Sbjct: 1231 LNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPV 1290

Query: 110  IR----SEVVNLIVIHVDAACDDKCRVIGFGAVFRNSK-GLVAA 148
            ++    S  V+L  ++ DAAC  +     FG + R+S   LVAA
Sbjct: 1291 VQYWRPSSSVSL-KLNTDAAC--RGASTSFGCIIRDSSCSLVAA 1331

BLAST of Lcy02g008620 vs. ExPASy TrEMBL
Match: A0A7J6ETT5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003168 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-06
Identity = 50/174 (28.74%), Postives = 67/174 (38.51%), Query Frame = 0

Query: 9   DNWIWHFEKHGRYTIRSGY----------------------KAYMMHKL---------EG 68
           D+W+WHF  HG Y+++SGY                       AY   K+         +G
Sbjct: 211 DDWLWHFTSHGHYSVKSGYNLAIGGENLQPSSSNEVMAAWWSAYWAIKIPKKILHFGWKG 270

Query: 69  SPFDAESDLGYCLDWICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEY-KQVNLG 128
                 S  G          W IW +RN  +HGR I    +   WI  Y  E  ++ N  
Sbjct: 271 FHEILPSFSGLFRRQSLSHTWTIWFERNKKSHGRTIRTPHQIKIWISSYYNEICRERNKT 330

Query: 129 NLGPSVSNGRHCIRSEV-VNLIVIHVDAACDDKCRVIGFGAV-FRNSKGLVAAV 149
             G S         +E  VN   + VDA       VIGFGAV F + K + AA+
Sbjct: 331 KKGVSTGCTSEQSNTETEVNNYKLFVDAGISTPQNVIGFGAVIFSSDKQMKAAL 384

BLAST of Lcy02g008620 vs. ExPASy TrEMBL
Match: A0A803QS40 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-06
Identity = 44/171 (25.73%), Postives = 74/171 (43.27%), Query Frame = 0

Query: 1   MPLSSVAP-DNWIWHFEKHGRYTIRSGYKAYMMHKLEGSPFDAESD-------------- 60
           +PLS+ AP D W+W+   HG YT++S         +     D ++               
Sbjct: 681 IPLSTTAPYDCWVWNHTVHGEYTVQSVVSMLRQFGVFQITLDFQAGSRMKDGDFIMYLSK 740

Query: 61  --LGYCLDWICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIH----RYIQEYKQVNLGNLG 120
               Y ++ I    W IW DRN++ H +    L  +   IH     Y+  ++QV+  ++ 
Sbjct: 741 LYTKYDMEKILCTMWFIWFDRNNILHDK----LALQPAAIHAKSMAYLANFQQVHFVSIT 800

Query: 121 PSVSNG---RHCIRSEVVNLIVIHVDAACDDKCRVIGFGAVFRNSKGLVAA 148
           P+           ++     + ++VDAA    C  +GFGA+ R+S G V A
Sbjct: 801 PTPLPSVAPHQPWQAPPQTRLKMNVDAAVSSTCNKLGFGAIIRDSNGHVRA 847

BLAST of Lcy02g008620 vs. ExPASy TrEMBL
Match: A0A803NQ77 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.5e-06
Identity = 42/144 (29.17%), Postives = 60/144 (41.67%), Query Frame = 0

Query: 27   YKAYMMHKLEGSPFD-------AESDLGYCLDWICVGAWAIWNDRNSVNHGRAIPGLDEK 86
            YK YM +      +D       A +DL   L+ I    W IW++RN   HG     +D  
Sbjct: 1200 YKIYMPNMGNAKGYDIFSYIAAAHNDLE--LEQIVCLMWNIWSERNKETHGSKPKPVDVL 1259

Query: 87   CDWIHRYIQEY------KQVNLGNLG----------PSVSNGRHCIRSEVVNLIVIHVDA 146
            C +   Y+ ++      KQV  G             P+ S      RS    L  ++VDA
Sbjct: 1260 CSYSASYLDQFHKATSSKQVAAGASSQEHLSTPPSVPTASRAPQTWRSPPAGLYKLNVDA 1319

Query: 147  ACDDKCRVIGFGAVFRNSKGLVAA 148
            ACD     +G+GA+ R+  G V A
Sbjct: 1320 ACDQAVGTLGYGALIRDHMGDVVA 1341

BLAST of Lcy02g008620 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-07
Identity = 41/110 (37.27%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 51  DWICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEYKQVNLGNLG------PSVSN 110
           D + VG WAIWNDRN++   R IP    + DWI  Y+++++  ++ +LG       + SN
Sbjct: 86  DLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSN 145

Query: 111 GR---HCIRSEVVNLIVIHVDAACDDKCRVIGFGAVFRNSKG--LVAAVH 150
            R   +         I I+VDAAC       G G V RN KG  L AA H
Sbjct: 146 DRTIENYWSPPPAGWIKINVDAACKKHQFRTGIGIVCRNEKGQILAAASH 195

BLAST of Lcy02g008620 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-06
Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 50   LDWICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEYKQVNLGNLGP-SVSNGRHC 109
            L+   +  W IWNDRNS+ HG+ +  ++ KC+W+  ++  + Q  + N  P + SN R  
Sbjct: 1231 LNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPV 1290

Query: 110  IR----SEVVNLIVIHVDAACDDKCRVIGFGAVFRNSK-GLVAA 148
            ++    S  V+L  ++ DAAC  +     FG + R+S   LVAA
Sbjct: 1291 VQYWRPSSSVSL-KLNTDAAC--RGASTSFGCIIRDSSCSLVAA 1331

BLAST of Lcy02g008620 vs. NCBI nr
Match: KAF4361847.1 (hypothetical protein F8388_003168 [Cannabis sativa])

HSP 1 Score: 61.6 bits (148), Expect = 8.8e-06
Identity = 50/174 (28.74%), Postives = 67/174 (38.51%), Query Frame = 0

Query: 9   DNWIWHFEKHGRYTIRSGY----------------------KAYMMHKL---------EG 68
           D+W+WHF  HG Y+++SGY                       AY   K+         +G
Sbjct: 211 DDWLWHFTSHGHYSVKSGYNLAIGGENLQPSSSNEVMAAWWSAYWAIKIPKKILHFGWKG 270

Query: 69  SPFDAESDLGYCLDWICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEY-KQVNLG 128
                 S  G          W IW +RN  +HGR I    +   WI  Y  E  ++ N  
Sbjct: 271 FHEILPSFSGLFRRQSLSHTWTIWFERNKKSHGRTIRTPHQIKIWISSYYNEICRERNKT 330

Query: 129 NLGPSVSNGRHCIRSEV-VNLIVIHVDAACDDKCRVIGFGAV-FRNSKGLVAAV 149
             G S         +E  VN   + VDA       VIGFGAV F + K + AA+
Sbjct: 331 KKGVSTGCTSEQSNTETEVNNYKLFVDAGISTPQNVIGFGAVIFSSDKQMKAAL 384

BLAST of Lcy02g008620 vs. NCBI nr
Match: XP_023897447.1 (uncharacterized protein LOC112009345 [Quercus suber])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 43/182 (23.63%), Postives = 71/182 (39.01%), Query Frame = 0

Query: 1    MPLSSVAP-DNWIWHFEKHGRYTIRSGYKAYMMHKLEGSPFDAESDLGYCLDW------- 60
            +PLS+  P D  IW    +G +++RS Y+  M      +   A S+      W       
Sbjct: 852  IPLSTRFPEDRVIWAETSNGGFSVRSAYRVAMGLYQAENAVSASSNSQLQSFWKKLWHLP 911

Query: 61   -------------ICVGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEYKQVNLGNLG 120
                         +   AWA W +RN + HG      +    W++RY+ EY         
Sbjct: 912  VPHKSFDEEKIILVVTVAWAFWCNRNEIRHGAEKKSPEAIVQWVNRYLLEYS-------- 971

Query: 121  PSVSNGRHCIRSEV--------VNLIVIHVDAACDDKCRVIGFGAVFRNSKGLVAAVHGQ 154
             + +     +R EV         +++ ++VD A       +G GAV R+ +G V A   +
Sbjct: 972  -AATESVPAVREEVSVTWNPPPPSILKVNVDGATTKNLNFVGVGAVVRDEQGRVVAAMSR 1024

BLAST of Lcy02g008620 vs. NCBI nr
Match: XP_030941960.1 (uncharacterized protein LOC115966980 [Quercus lobata])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-05
Identity = 42/142 (29.58%), Postives = 65/142 (45.77%), Query Frame = 0

Query: 55  VGAWAIWNDRNSVNHGRAIPGLDEKCDWIHRYIQEY------KQVNLGNLGPSVSNGRHC 114
           V AW IWN RN+V HG    G  ++  W+++   E+       QV L    P+VS  R+ 
Sbjct: 14  VQAWLIWNQRNTVVHG----GAFKEPSWLNKRATEFLDEFHNSQVQLSTSTPTVS--RNS 73

Query: 115 IRSEVVNLIVIHVDAACDDKCRVIGFGAVFRNSKGLVAAVHGQSIFVIPFVCGSKSDARK 174
            +   V++  ++ DAA   +    GFGA+ RN KG V A    SI   P  C  +++   
Sbjct: 74  WQPPPVSVYKVNFDAAIFSELNYSGFGAIIRNDKGEVMA--AMSIKGPPVTCSEEAEVLA 133

Query: 175 SSSCREIGYNKYSYSIRLSGSD 191
                E   +    ++ L G +
Sbjct: 134 CRKALEFTVDASFSNVMLEGDN 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CTE31.3e-0737.27uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1DX301.1e-0633.65uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A7J6ETT54.3e-0628.74Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003168 PE=4 SV=1[more]
A0A803QS405.6e-0625.73Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NQ779.5e-0629.17Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022145060.12.7e-0737.27uncharacterized protein LOC111014578 [Momordica charantia][more]
XP_022158377.12.3e-0633.65uncharacterized protein LOC111024874 [Momordica charantia][more]
KAF4361847.18.8e-0628.74hypothetical protein F8388_003168 [Cannabis sativa][more]
XP_023897447.11.2e-0523.63uncharacterized protein LOC112009345 [Quercus suber][more]
XP_030941960.11.5e-0529.58uncharacterized protein LOC115966980 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g008620.1Lcy02g008620.1mRNA