Lcy02g008530 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g008530
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionProtein of Unknown Function (DUF239)
LocationChr02: 13376417 .. 13376605 (+)
RNA-Seq ExpressionLcy02g008530
SyntenyLcy02g008530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATTGGTGGTGGAATTCGGGTCGGGTATTGGGCGGCGTTCTTATTCACGCACCTTCAAAGGGCGATGATTCAATTCGGTGGGGGAGGTGGTGAATTCGAGAGCTTCTGGATTTCACACGGCGACGCAGATGGGCAGTGGCCATTTTGCTGGCGATTGATTTGGAAAAACTTCATATTTTCGTAA

mRNA sequence

ATGAGAATTGGTGGTGGAATTCGGGTCGGGTATTGGGCGGCGTTCTTATTCACGCACCTTCAAAGGGCGATGATTCAATTCGGTGGGGGAGGTGGTGAATTCGAGAGCTTCTGGATTTCACACGGCGACGCAGATGGGCAGTGGCCATTTTGCTGGCGATTGATTTGGAAAAACTTCATATTTTCGTAA

Coding sequence (CDS)

ATGAGAATTGGTGGTGGAATTCGGGTCGGGTATTGGGCGGCGTTCTTATTCACGCACCTTCAAAGGGCGATGATTCAATTCGGTGGGGGAGGTGGTGAATTCGAGAGCTTCTGGATTTCACACGGCGACGCAGATGGGCAGTGGCCATTTTGCTGGCGATTGATTTGGAAAAACTTCATATTTTCGTAA

Protein sequence

MRIGGGIRVGYWAAFLFTHLQRAMIQFGGGGGEFESFWISHGDADGQWPFCWRLIWKNFIFS
Homology
[Close]
BLAST of Lcy02g008530 vs. TAIR 10
Match: AT1G70550.2 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 42.0 bits (97), Expect = 2.1e-04
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   MRIGGGIRVGYWAAFLFTHLQR--AMIQFGG 30
           ++ G G  VGYW AFLFTHL++  +M+QFGG
Sbjct: 294 LQFGSGALVGYWPAFLFTHLKQHGSMVQFGG 324

[Close]
BLAST of Lcy02g008530 vs. TAIR 10
Match: AT1G70550.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 42.0 bits (97), Expect = 2.1e-04
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   MRIGGGIRVGYWAAFLFTHLQR--AMIQFGG 30
           ++ G G  VGYW AFLFTHL++  +M+QFGG
Sbjct: 349 LQFGSGALVGYWPAFLFTHLKQHGSMVQFGG 379

[Close]
BLAST of Lcy02g008530 vs. TAIR 10
Match: AT5G50150.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 41.2 bits (95), Expect = 3.5e-04
Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = 0 

Query: 1   MRIGGGIRVGYWAAFLFTHLQ--RAMIQFGG 30
           + +G G+ VGYW AFLF+HL+   +M+QFGG
Sbjct: 304 LELGNGLLVGYWPAFLFSHLRSHASMVQFGG 334

[Close]
BLAST of Lcy02g008530 vs. TAIR 10
Match: AT1G10750.1 (Protein of Unknown Function (DUF239) )

HSP 1 Score: 40.8 bits (94), Expect = 4.6e-04
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 1   MRIGGGIRVGYWAAFLFTHLQR--AMIQFGG 30
           +  G GI VGYW +FLFTHL+   +M+Q+GG
Sbjct: 351 LEFGSGILVGYWPSFLFTHLKEHASMVQYGG 381

The following BLAST results are available for this feature:
BLAST of Lcy02g008530 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g008530 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g008530 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g008530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70550.22.1e-0458.06Protein of Unknown Function (DUF239) [more]
AT1G70550.12.1e-0458.06Protein of Unknown Function (DUF239) [more]
AT5G50150.13.5e-0454.84Protein of Unknown Function (DUF239) [more]
AT1G10750.14.6e-0454.84Protein of Unknown Function (DUF239) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g008530.1Lcy02g008530.1mRNA