Lcy02g008460 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g008460
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr02: 12926096 .. 12930730 (-)
RNA-Seq Expression	Lcy02g008460
Synteny	Lcy02g008460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTCCCTCTGGCTATGGGTCTGGTGAATGATGATAAAAACTACTCCATTTTCAAAATCCCACTCTACTCATCCACTTCGCTTCTCGAAGCTCTGTTGAACTCCATCATCCTTGTTCAATAATGGCTGCCATGGCTTCCTTTTCCTTCTCCTTCTCCTTCTCTTCCTCGCTCCTGCCTTCTTCGCTTTCTTTCGATCATGGCTCCACTTCCTTTTCCCCCATCTTTCTTTCATCTTCTTCAGACTCCAATACTCGCATTGTTCGCTGTGCATTTGCAGCCCCCGCTAGAAAATCCCCTCCTCCTCCTCCTCCTTCTTCTTCCTCCCCTGTTAAGAAGAGGCACTGGAAGCAAGGTGAATTTCCAGGCATTACAGAGACATCCGCTCCGAAGAAGACCCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAACGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCGGACCATATCGCGAACAAACGGTGGTTTCAAGCTCTTGAGGTCGCTTCCCCTTTCTTTAATTTCACTTTTCGTTTTAGGTTCATTTTCTGCCTCAGCGATTCCTTAACTCTGCAATAATAGTTTTCTTATGTTCTGCACCCCCTCTTTTTGTTACTCCCTCTTCGGTTCTGTTTAATGTTTTGATTTCTTTTCTAACACTGTGATTTGAGACAAAATCGATGAGAGATTGCATAATTTTGTATTATACACTAGACAAAGACTACTTGTTTGGGGATTTCAGGGAAATCCATTATATGCTTTGCAAAGCCTAATTGAAAACGTGAACATTCATGTGCCTTAGTTTGTAGGAATGAAGTGATAATTTGAAGAGTCTGCATAAACTTCTGGCGCTATTGTTTTCACCTCTAACAATTGTAGCTGCTTTAATTCAACCGTTCAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCTGGCCAACCACAGCGTGCACGTAAGCTTTTTGACACAATGGTTGAAGAAAGATGTGAACCTACCTCCGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAAACCCTCCCTGGCTGCCAGCCTGACGTTTACACTTATAGTACTTTAATCAAGGCTTGTGTCGATGATTCTCGCTTTGAACTAGTTGAATCTTTGTATGAGGAAATGGCCGAACGACTGATAACTCCAAATACGGTAACCCAGAATATAGTCTTAAGTGGGTATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTATTAGGAATGCTTGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGTGTGTTTGGTAACAAGGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATCGAGCCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAACATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATATGAGATTCCCGAGAATACCTCATTTTACAATGCGGTTATATCTGCATGTGCTAAGGCAGAGGATCTGATGGAAATGGACAGAGTATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACGTATTCTGTTATGATAGAAGCATATGGAAAGGAAGGCATGAATGACAGGGTTCATTACTTGGAGCTGGAAAAAAAGCAGGTGATTGATGATGCTTCCAATAACGAGTGATTGGTCAATGGAATGGCGTGCAAAATTAGTGCATGTTTGAGAATTTGGACGCTACACTGTGCCTGTTCCACCAAGGGCCCTATCCCCCAGTCCTGTTAAATTGCTATATTGGGTGCATCTCAGAAATCAGATCTGCCCTTCCAGTCCCCGCCTATGTGTCGTGTTTGACCATAACGTTTCGATGATCCTTCAGGAAAATATTATTTTCTGTGGGAAATTTGCGGCTAACTGAATTTTATGTATAGAGCTTTTGTATCAATGAAGCTGATCAGTATTTAGTGTCTCTCCAACCCTTGTTATAATAGTTTTAGGCGAACTTGCTCTTTGTCCTGGACAATTGGCGTCCAGTGAAGAAGTGTGCGATTCTCAAGTCCGTGGTGCCTTGCAAATTGGTGGCCACCACCCTTGTGTGCCCATGTGGGGCTATGTTAAAAGTATTGCCCTCAGAAGCAACAATTGACATTGCCTCGTGGCTTTCGGCCCCCAAAATTTTAAACAATGTTACGACCGAGACGATGAAATTGTTCCAATTAATTAGTTTCTGAATATAATTGTTTCATAAAATGCCATTGGCTTCCATCATTAATTGTTTACTTAAAGTCAAGATCATGACCATTGTTTCATTTACAGGTATACAAGGGATGAGATTAACATGATGTTAGTTATGATTTGCAGAAGAGCAGAGGCGGCCGGGGTTCAAGAGAATGCATTGGCCACTCCAAGGACTTTGACCTCTGCCTCCACAATGCAAATGTCCTTCACCAGAAAACCCATGTTTGGTTGCTGGAAATTGCTTAAGAGAATGAATCTAGGCCCTCCAACTTCTGGATTTGACGCACTAAACCAATACGAAACTGCCCAACACCAAAACAAGAAAACTCCTCGTCATTTTGATAGAACTGAATTGTTGGTATTTGACTATGTGGGTCACTGTGATTATATATTTTACCTTTTCCAGAATGATGCTTCGATTGCTCCTGATCTTGCAGGCGCAATGTTACCTCTGCGTATATTTTGGTAGCAGGATGTAGTGTTGTGGGATCTGCCAGTGCCAGAAATAGTGAAAGATGGCTACCTTCGCCACTGCCTCTTCCCTTTGGATACACTCGAATTTTCCTGCAATGACACCGTTCGTATGTGTTCCTCATCAGATCATTCCAGCTTCAAACCTGATCAGTTAATTATCATAATGTATGGAAGGTAGATGGATACCATTTTTGATCCCCGGCGTTGAAGATTTTGGACTCGTGGCTCGTGGCATCCAACTCGGAGAACTTATCAATTTTCCAAATATGCTTGTAAATGGTGGGACTCTTTATCATTGACAAACACTCCCCTTTGCCGCCTTTGAAATTTTCTTTGCTAACAAAGACCTCAGCTCCAAACACACACGCATCGTCCACCAGATACCCATTTGAGGATTCTTCGAAGTCTTTGAGGCTAATGTATTTATCGATACCCCATTCTTTCTTCATTCCTCGAAACCGCCTCGGTTTCCACTTGCCATCTTCACATTGCAGATGTTATTATTATTCATATTATATGCAGCTTATCTCTTCAAGGTAAGAGAAGATATACCTTCAACTGTGAGGTAGTTATCGTTGTTTTGATCGAGCAAAAAAAGTCGGTAAACGACGAACACTTCCCAATTTGGTTGGAGGGAATCGGTCCCTGAAATGGCCAAATAGAGAGAGATGTGGTCATTCCCATTCTTGCTTTTGTTAGCAAGTGGGTGGAGTACCAATTTCCTGCAAGCACATTACATGATTATGACAATGCAGTGCGGCTAAGCCTAAGGTTACGAAGATGAAAAAGCTGAAGTATTATTACCATTTGTAGCCACCTGCCTCAAACTCCCCGGATTCAAATCTATCCACAGAGTTCTTGGCTAACAATGAAAATGACTCAATCTTGACTGTGTAATGAGCTGGTGGGACATCGGAAACATATCTTGCGATCTCTGCAAATTGTTTCATATTGGTAAGAAAACAAATAATGACTAGGTCTATGCTATGATCTTGCCACTTTTTTATCTTTTTTCTTTTTTGGTAAAGTGCATGCATTTTATGAGGATCTCAACATAGAAATTGATAAATTACTATGTAGTATGTGCAATAGGTTTTCCTTCCCAGTTTATCCGTGTTGAATTTGAACTATTCTCATGTTGTGCTGTACATACCCATATCTCATGTGGGCAAAAGCTAACTTTTTGTCATTCAATACAGACTAGAAAACACATCATGATGTATATAAATTTTGTTATCGTAACAATTACATGTGCACAGGGAGGGGGAGAGAGATACCGTCCATATCGTCACCACCAAGGAGATTGGCCATTACAAAAGGGATTATGTGAGAGGGGTAGGAGAAGTGTAGATGGCTCGACACAGATCGTAGTTTAGTTTATTAGATTTATGATCCCTGAGGAACGTCCATCCCAGACCATCCTCTTATATGTTTTTTAGACAGGCGCAAAGGTATTACTTTCTGCCGTTATGAAAGTAATATTCTGTGCTTGCAGTAGTCAACACAACATGGTAAAGGATAATACCTATCAAAACAGAGGGTTCAAGGAATCTTATTCCTGTAGCCTCCCAAGCTATATAT

mRNA sequence

TCCCTCCCTCTGGCTATGGGTCTGGTGAATGATGATAAAAACTACTCCATTTTCAAAATCCCACTCTACTCATCCACTTCGCTTCTCGAAGCTCTGTTGAACTCCATCATCCTTGTTCAATAATGGCTGCCATGGCTTCCTTTTCCTTCTCCTTCTCCTTCTCTTCCTCGCTCCTGCCTTCTTCGCTTTCTTTCGATCATGGCTCCACTTCCTTTTCCCCCATCTTTCTTTCATCTTCTTCAGACTCCAATACTCGCATTGTTCGCTGTGCATTTGCAGCCCCCGCTAGAAAATCCCCTCCTCCTCCTCCTCCTTCTTCTTCCTCCCCTGTTAAGAAGAGGCACTGGAAGCAAGGTGAATTTCCAGGCATTACAGAGACATCCGCTCCGAAGAAGACCCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAACGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCGGACCATATCGCGAACAAACGGTGGTTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCTGGCCAACCACAGCGTGCACGTAAGCTTTTTGACACAATGGTTGAAGAAAGATGTGAACCTACCTCCGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAAACCCTCCCTGGCTGCCAGCCTGACGTTTACACTTATAGTACTTTAATCAAGGCTTGTGTCGATGATTCTCGCTTTGAACTAGTTGAATCTTTGTATGAGGAAATGGCCGAACGACTGATAACTCCAAATACGGTAACCCAGAATATAGTCTTAAGTGGGTATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTATTAGGAATGCTTGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGTGTGTTTGGTAACAAGGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATCGAGCCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAACATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGAAGAGCAGAGGCGGCCGGGGTTCAAGAGAATGCATTGGCCACTCCAAGGACTTTGACCTCTGCCTCCACAATGCAAATGTCCTTCACCAGAAAACCCATGTTTGGTTGCTGGAAATTGCTTAAGAGAATGAATCTAGGCCCTCCAACTTCTGGATTTGACGCACTAAACCAATACGAAACTGCCCAACACCAAAACAAGAAAACTCCTCGTCATTTTGATAGAACTGAATTGTTGGTATTTGACTATGTGGGTCACTGTGATTATATATTTTACCTTTTCCAGAATGATGCTTCGATTGCTCCTGATCTTGCAGGCGCAATGTTACCTCTGCGTATATTTTGGTAGCAGGATGTAGTGTTGTGGGATCTGCCAGTGCCAGAAATAGTGAAAGATGGCTACCTTCGCCACTGCCTCTTCCCTTTGGATACACTCGAATTTTCCTGCAATGACACCGTTCGTATGTGTTCCTCATCAGATCATTCCAGCTTCAAACCTGATCAGTTAATTATCATAATGTATGGAAGGTAGATGGATACCATTTTTGATCCCCGGCGTTGAAGATTTTGGACTCGTGGCTCGTGGCATCCAACTCGGAGAACTTATCAATTTTCCAAATATGCTTGTAAATGGTGGGACTCTTTATCATTGACAAACACTCCCCTTTGCCGCCTTTGAAATTTTCTTTGCTAACAAAGACCTCAGCTCCAAACACACACGCATCGTCCACCAGATACCCATTTGAGGATTCTTCGAAGTCTTTGAGGCTAATGTATTTATCGATACCCCATTCTTTCTTCATTCCTCGAAACCGCCTCGGTTTCCACTTGCCATCTTCACATTGCAGATGTTATTATTATTCATATTATATGCAGCTTATCTCTTCAAGGTAAGAGAAGATATACCTTCAACTGTGAGGTAGTTATCGTTGTTTTGATCGAGCAAAAAAAGTCGGTAAACGACGAACACTTCCCAATTTGGTTGGAGGGAATCGGTCCCTGAAATGGCCAAATAGAGAGAGATGTGGTCATTCCCATTCTTGCTTTTGTTAGCAAGTGGGTGGAGTACCAATTTCCTGCAAGCACATTACATGATTATGACAATGCAGTGCGGCTAAGCCTAAGGTTACGAAGATGAAAAAGCTGAAGTATTATTACCATTTGTAGCCACCTGCCTCAAACTCCCCGGATTCAAATCTATCCACAGAGTTCTTGGCTAACAATGAAAATGACTCAATCTTGACTGTGTAATGAGCTGGTGGGACATCGGAAACATATCTTGCGATCTCTGCAAATTGTTTCATATTGGTAAGAAAACAAATAATGACTAGGTCTATGCTATGATCTTGCCACTTTTTTATCTTTTTTCTTTTTTGGTAAAGTGCATGCATTTTATGAGGATCTCAACATAGAAATTGATAAATTACTATGTAGTATGTGCAATAGGTTTTCCTTCCCAGTTTATCCGTGTTGAATTTGAACTATTCTCATGTTGTGCTGTACATACCCATATCTCATGTGGGCAAAAGCTAACTTTTTGTCATTCAATACAGACTAGAAAACACATCATGATGTATATAAATTTTGTTATCGTAACAATTACATGTGCACAGGGAGGGGGAGAGAGATACCGTCCATATCGTCACCACCAAGGAGATTGGCCATTACAAAAGGGATTATGTGAGAGGGGTAGGAGAAGTGTAGATGGCTCGACACAGATCGTAGTTTAGTTTATTAGATTTATGATCCCTGAGGAACGTCCATCCCAGACCATCCTCTTATATGTTTTTTAGACAGGCGCAAAGGTATTACTTTCTGCCGTTATGAAAGTAATATTCTGTGCTTGCAGTAGTCAACACAACATGGTAAAGGATAATACCTATCAAAACAGAGGGTTCAAGGAATCTTATTCCTGTAGCCTCCCAAGCTATATAT

Coding sequence (CDS)

ATGGCTGCCATGGCTTCCTTTTCCTTCTCCTTCTCCTTCTCTTCCTCGCTCCTGCCTTCTTCGCTTTCTTTCGATCATGGCTCCACTTCCTTTTCCCCCATCTTTCTTTCATCTTCTTCAGACTCCAATACTCGCATTGTTCGCTGTGCATTTGCAGCCCCCGCTAGAAAATCCCCTCCTCCTCCTCCTCCTTCTTCTTCCTCCCCTGTTAAGAAGAGGCACTGGAAGCAAGGTGAATTTCCAGGCATTACAGAGACATCCGCTCCGAAGAAGACCCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAACGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCGGACCATATCGCGAACAAACGGTGGTTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCTGGCCAACCACAGCGTGCACGTAAGCTTTTTGACACAATGGTTGAAGAAAGATGTGAACCTACCTCCGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAAACCCTCCCTGGCTGCCAGCCTGACGTTTACACTTATAGTACTTTAATCAAGGCTTGTGTCGATGATTCTCGCTTTGAACTAGTTGAATCTTTGTATGAGGAAATGGCCGAACGACTGATAACTCCAAATACGGTAACCCAGAATATAGTCTTAAGTGGGTATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTATTAGGAATGCTTGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGTGTGTTTGGTAACAAGGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATCGAGCCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAACATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGAAGAGCAGAGGCGGCCGGGGTTCAAGAGAATGCATTGGCCACTCCAAGGACTTTGACCTCTGCCTCCACAATGCAAATGTCCTTCACCAGAAAACCCATGTTTGGTTGCTGGAAATTGCTTAA

Protein sequence

MAAMASFSFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPPPPPPSSSSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIANKRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKKSRGGRGSRECIGHSKDFDLCLHNANVLHQKTHVWLLEIA

Homology

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BLAST of Lcy02g008460 vs. ExPASy Swiss-Prot
Match: Q9SQU6 (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=1 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 8.3e-164
Identity = 296/405 (73.09%), Postives = 331/405 (81.73%), Query Frame = 0


Query: 8   SFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPPPPPPSSS 67
           S S SFSSSL  S +    G   F           +  IVRC  A  A KS P       
Sbjct: 3   SMSLSFSSSLCSSRI--PEGKRRF--------RHRDVGIVRCVLA--ASKSSP------G 62

Query: 68  SPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIANKRW 127
           S  KKR WK GEFPGITE    ++TP+KNVKKKLDR++ A  W NTVTE LSD IA K+W
Sbjct: 63  SVTKKRLWKDGEFPGITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQW 122

Query: 128 FQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYTA 187
            QALEVF+MLREQ FY+PKEGTYMKLLVLLG+SGQP RA+KLFD M+EE  EPT ELYTA
Sbjct: 123 LQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTA 182

Query: 188 LLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEMAER 247
           LLAAY R+NLIDDAFS L+ MK+ P CQPDV+TYSTL+KACVD S+F+LV+SLY+EM ER
Sbjct: 183 LLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDER 242

Query: 248 LITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEM 307
           LITPNTVTQNIVLSGYG++G++DQMEKVL  ML ST C+PDVWTMNIILSVFGN G+I+M
Sbjct: 243 LITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDM 302

Query: 308 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 367
           ME WYEKFRNFGIEPETRTFNILIG+YGKKRMYDKMSSVMEYMRKL+FPWTTSTYNN+IE
Sbjct: 303 MESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIE 362

Query: 368 AFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           AFADVGDAKNME TF+QMR+EGM+ADTKTFCCLINGYANAGLFHK
Sbjct: 363 AFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHK 389

[Close]

BLAST of Lcy02g008460 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 293.9 bits (751), Expect = 3.1e-78
Identity = 144/305 (47.21%), Postives = 193/305 (63.28%), Query Frame = 0


Query: 103 RKNNAKAWANTVTEALSDHIANKRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQ 162
           +K + K    TV E+L + I   RW  A++VFE+LREQ +Y+P  G Y+KL+V+LG+  Q
Sbjct: 106 KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQ 165

Query: 163 PQRARKLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYS 222
           P++A +LF  M+ E C    E+YTAL++AY R+   D AF+ L  MK+   CQPDV+TYS
Sbjct: 166 PEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYS 225

Query: 223 TLIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLES 282
            LIK+ +    F+ V+ L  +M  + I PNT+T N ++  YGK   + +ME  L+ ML  
Sbjct: 226 ILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGE 285

Query: 283 TTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDK 342
             C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNIL+ +YGK   Y K
Sbjct: 286 DDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKK 345

Query: 343 MSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLIN 402
           MS+VMEYM+K  + WT  TYN VI+AF   GD K MEY F  M++E +     T C L+ 
Sbjct: 346 MSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVR 405

Query: 403 GYANA 408
            Y  A
Sbjct: 406 AYGRA 410

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BLAST of Lcy02g008460 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.2e-73
Identity = 133/319 (41.69%), Postives = 202/319 (63.32%), Query Frame = 0


Query: 94  LKNVKKKLDRKNNAKAWANTVTEALSDHIANKRWFQALEVFEMLREQPFYEPKEGTYMKL 153
           +K +++K + +     W   V EAL + I   RW  AL++F +LR+Q +YEP+  TY KL
Sbjct: 41  VKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKL 100

Query: 154 LVLLGRSGQPQRARKLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPG 213
             +LG   QP +A  LF+ M+ E  +PT ++YT+L++ Y ++ L+D AFSTL  MK++  
Sbjct: 101 FKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD 160

Query: 214 CQPDVYTYSTLIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQME 273
           C+PDV+T++ LI  C    RF+LV+S+  EM+   +  +TVT N ++ GYGK G +++ME
Sbjct: 161 CKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEME 220

Query: 274 KVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGA 333
            VL  M+E     PDV T+N I+  +GN   +  ME WY +F+  G++P+  TFNILI +
Sbjct: 221 SVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILS 280

Query: 334 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRAD 393
           +GK  MY KM SVM++M K  F  TT TYN VIE F   G  + M+  F +M+ +G++ +
Sbjct: 281 FGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 340

Query: 394 TKTFCCLINGYANAGLFHK 413
           + T+C L+N Y+ AGL  K
Sbjct: 341 SITYCSLVNAYSKAGLVVK 359

[Close]

BLAST of Lcy02g008460 vs. ExPASy Swiss-Prot
Match: Q9SV96 (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.4e-38
Identity = 87/289 (30.10%), Postives = 145/289 (50.17%), Query Frame = 0


Query: 126 RWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELY 185
           +W Q LEVF  +++Q +Y P  G Y KL+ ++G+ GQ + A  LF  M    C P + +Y
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171

Query: 186 TALLAAYC----RNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLY 245
            AL+ A+     +   ++     L+ MK +  CQP+V TY+ L++A     + + V +L+
Sbjct: 172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231

Query: 246 EEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGN 305
           +++    ++P+  T N V+  YGK G   +ME VL  M  S  C+PD+ T N+++  +G 
Sbjct: 232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 291

Query: 306 KGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTST 365
           K + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  T
Sbjct: 292 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 351

Query: 366 YNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLF 411
           Y  +I  +   G        FE++          T   ++  Y   GL+
Sbjct: 352 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLY 399

[Close]

BLAST of Lcy02g008460 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.7e-37
Identity = 88/293 (30.03%), Postives = 146/293 (49.83%), Query Frame = 0


Query: 127 WFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYT 186
           W Q L+VF  +++Q +Y    G Y KL+ ++GR GQ + A  LF  M    C+P + +Y 
Sbjct: 104 WLQCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYN 163

Query: 187 ALLAAYC----RNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYE 246
           +L+ A+     +   +  A      MK +  CQP + TY+ L++A       + V+ L++
Sbjct: 164 SLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFK 223

Query: 247 EMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNK 306
           ++ E +++P+  T N VL  YGK G   +ME VL+ M +ST CRPDV T NI++  +G K
Sbjct: 224 DLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRM-KSTQCRPDVITFNILIDSYGRK 283

Query: 307 GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTY 366
              + ME+ ++        P   TFN +I  YG+ R+ +K  SV+E M +L F     T 
Sbjct: 284 QTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQ 343

Query: 367 NNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKKSR 416
             +I  +A           F+++     +    +   ++  Y   GL  +  R
Sbjct: 344 ECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADR 395

[Close]

BLAST of Lcy02g008460 vs. ExPASy TrEMBL
Match: A0A6J1H6E5 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460035 PE=4 SV=1)

HSP 1 Score: 740.0 bits (1909), Expect = 6.1e-210
Identity = 369/406 (90.89%), Postives = 383/406 (94.33%), Query Frame = 0


Query: 10  SFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPPPP---PPSS 69
           +FSFSSSLLPSS+SFDHGS+SF PI LS S DSN+R VRC FAAPARKSPPPP     SS
Sbjct: 3   AFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSSSS 62

Query: 70  SSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIANKR 129
           SSPVKK+HWKQGEFPG+TET   +KTPLKNVKKKLDRK NAKAWANTVTEALS+HI NKR
Sbjct: 63  SSPVKKKHWKQGEFPGVTETFDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKR 122

Query: 130 WFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYT 189
           W QALEVFEMLR+QPFYEPKEGTYMKLLVLLGRSGQPQRAR LFDTMVEE+CEPT+ELYT
Sbjct: 123 WIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYT 182

Query: 190 ALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEMAE 249
           ALLAAYCRNNLIDDAFS LNLMKTLP CQPD+YTYS LIKACVD SRFELVESLYEEMAE
Sbjct: 183 ALLAAYCRNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAE 242

Query: 250 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIE 309
           RLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIE
Sbjct: 243 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIE 302

Query: 310 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 369
           MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI
Sbjct: 303 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 362

Query: 370 EAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           EAFADVGDAKNMEYTF QMRAEGM+ADTKTFCCLINGY+NAGLFHK
Sbjct: 363 EAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHK 408

[Close]

BLAST of Lcy02g008460 vs. ExPASy TrEMBL
Match: A0A1S3C7L9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497754 PE=4 SV=1)

HSP 1 Score: 739.6 bits (1908), Expect = 7.9e-210
Identity = 372/408 (91.18%), Postives = 384/408 (94.12%), Query Frame = 0


Query: 10  SFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDS-----NTRIVRCAFAAPARKSPPPPPP 69
           SFSFSSSLLPSS+SFDH ST   PIF+SSSS S     N+RIVRCAFAAP RKS  P P 
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSSSSSSSHPNSRIVRCAFAAPTRKS--PVPS 62

Query: 70  SSSSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIAN 129
           +SSSP KKRHWKQGEFPGITET   +KTPLKNVKKKLDRKNNAKAWANTVTEALSDHI+N
Sbjct: 63  TSSSPAKKRHWKQGEFPGITETPTRRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHISN 122

Query: 130 KRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSEL 189
           KRW +ALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQP RAR LFDTM++ERCEPTSEL
Sbjct: 123 KRWLEALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMLQERCEPTSEL 182

Query: 190 YTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEM 249
           YTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYS LIKACVD SRFE+VESLYEEM
Sbjct: 183 YTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSILIKACVDASRFEIVESLYEEM 242

Query: 250 AERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQ 309
           A+RLITPNTVTQNIVLSGYGKIGKYDQMEKVL+GMLESTTCRPDVWTMNIILSVFGNKGQ
Sbjct: 243 AQRLITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGQ 302

Query: 310 IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN 369
           IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN
Sbjct: 303 IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN 362

Query: 370 VIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           VIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK
Sbjct: 363 VIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 408

[Close]

BLAST of Lcy02g008460 vs. ExPASy TrEMBL
Match: A0A6J1EVC0 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436928 PE=4 SV=1)

HSP 1 Score: 737.3 bits (1902), Expect = 3.9e-209
Identity = 371/412 (90.05%), Postives = 386/412 (93.69%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPP 60
           MAAMASFSFSFSFSSSLLPSS+S DHG  SFSPI    S  SNT IVRCAFAAPARKSPP
Sbjct: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIV--PSPHSNTLIVRCAFAAPARKSPP 60

Query: 61  PPPPSSSSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSD 120
            P   SSSP KK HWKQGEFPGIT+TSAPKKTPLKNVK+KLDR+N+AKAWANTVTEALSD
Sbjct: 61  SP---SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKRKLDRENHAKAWANTVTEALSD 120

Query: 121 HIANKRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEP 180
           HIANKRW  ALEVFEMLREQPFYEPKEGTYMKL+VLLG+SGQP RAR++FD MVEERCE 
Sbjct: 121 HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEA 180

Query: 181 TSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESL 240
           TSELYTAL+AAYCRNNLIDDAFSTLNLMKTLP CQPDVYTYSTLIKACVDDSRFELVES+
Sbjct: 181 TSELYTALIAAYCRNNLIDDAFSTLNLMKTLPDCQPDVYTYSTLIKACVDDSRFELVESV 240

Query: 241 YEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFG 300
           YEEM ERLI+PNTVTQNIVLSGYGKIGKY+QMEKVLLGMLESTTCRPDVWTMNIIL VFG
Sbjct: 241 YEEMVERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGVFG 300

Query: 301 NKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTS 360
           N+GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWTTS
Sbjct: 301 NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS 360

Query: 361 TYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           TYNNVIEAFADVGDA +MEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK
Sbjct: 361 TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 407

[Close]

BLAST of Lcy02g008460 vs. ExPASy TrEMBL
Match: A0A6J1L0G6 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499248 PE=4 SV=1)

HSP 1 Score: 736.5 bits (1900), Expect = 6.7e-209
Identity = 373/444 (84.01%), Postives = 388/444 (87.39%), Query Frame = 0


Query: 8   SFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPPP------ 67
           +FSFSFSSSLLPSS+SFDHGS+SF PI LSSS DSN+R+VRC FAAPARKSPPP      
Sbjct: 3   AFSFSFSSSLLPSSVSFDHGSSSFFPILLSSSFDSNSRVVRCTFAAPARKSPPPSSSSSS 62

Query: 68  ---------------------------------PPPSSSSPVKKRHWKQGEFPGITETSA 127
                                            PPP SSSPVKK+HWKQGEFPG+TET  
Sbjct: 63  SSSSPDKKRHWKQGEFPGIIETSAPRMTPARKSPPPFSSSPVKKKHWKQGEFPGVTETFD 122

Query: 128 PKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIANKRWFQALEVFEMLREQPFYEPKEG 187
            +KTPLKNVKKKLDRK NAKAWANTVTEALS+HI NKRW QALEVFEMLR+QPFYEPKEG
Sbjct: 123 ARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEG 182

Query: 188 TYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLM 247
           TYMKLLVLLGRSGQPQRAR LFDTMVEE+CEPT+ELYTALLAAYCRNNLIDDAFS LNLM
Sbjct: 183 TYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLM 242

Query: 248 KTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 307
           KTLP CQPD+YTYS LIKACVD SRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGK
Sbjct: 243 KTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 302

Query: 308 YDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFN 367
           YDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFN
Sbjct: 303 YDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFN 362

Query: 368 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAE 413
           ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTF QMRAE
Sbjct: 363 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAE 422

[Close]

BLAST of Lcy02g008460 vs. ExPASy TrEMBL
Match: A0A6J1KKQ9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494156 PE=4 SV=1)

HSP 1 Score: 736.1 bits (1899), Expect = 8.8e-209
Identity = 372/414 (89.86%), Postives = 387/414 (93.48%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSD--SNTRIVRCAFAAPARKS 60
           MAAMA    S+SFSSSLLPSS+S DHG  SFSPIF S S    SNT IVRCAFAAPAR+S
Sbjct: 1   MAAMA----SYSFSSSLLPSSVSIDHGFVSFSPIFPSPSPSPHSNTLIVRCAFAAPARRS 60

Query: 61  PPPPPPSSSSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEAL 120
           PPPPP   SSP KKR WKQGEFPGIT+TSAPKKTPLKNVKKKLDR+N+AKAWANTVTEAL
Sbjct: 61  PPPPP--FSSPFKKRQWKQGEFPGITQTSAPKKTPLKNVKKKLDRENHAKAWANTVTEAL 120

Query: 121 SDHIANKRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERC 180
           SDHIANKRW  ALEVFEMLREQPFYEPKEGTYMKL+VLLGRSGQP RAR++FD M EERC
Sbjct: 121 SDHIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGRSGQPHRARQIFDIMFEERC 180

Query: 181 EPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVE 240
           EPTSELYTAL+AAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVD+SRFELVE
Sbjct: 181 EPTSELYTALIAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDESRFELVE 240

Query: 241 SLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSV 300
           SLYEEMAERLI+PNTVTQNIVLSGYGKIGKY+QMEKVLLGMLESTTCRPDVWTMNIIL V
Sbjct: 241 SLYEEMAERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTTCRPDVWTMNIILGV 300

Query: 301 FGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT 360
           FGN+GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWT
Sbjct: 301 FGNEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWT 360

Query: 361 TSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           TSTYNNVIEAFADVGDA +MEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK
Sbjct: 361 TSTYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 408

[Close]

BLAST of Lcy02g008460 vs. NCBI nr
Match: XP_038875824.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Benincasa hispida])

HSP 1 Score: 758.8 bits (1958), Expect = 2.6e-215
Identity = 378/403 (93.80%), Postives = 388/403 (96.28%), Query Frame = 0


Query: 10  SFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPPPPPPSSSSP 69
           SFSFSSSLLPSS+SFDHG+T F PIF+SSSS SN+ IVRCAFAAP RKS PPP  SSSSP
Sbjct: 3   SFSFSSSLLPSSVSFDHGATFFFPIFVSSSSHSNSPIVRCAFAAPTRKS-PPPSISSSSP 62

Query: 70  VKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIANKRWFQ 129
            KK+HWKQGEFPGITETS P+KTPLKNVKKKLDRKNNAKAWANTVTEALSDHI NKRW Q
Sbjct: 63  AKKKHWKQGEFPGITETSTPRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQ 122

Query: 130 ALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYTALL 189
           ALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQP RAR LFDTM+EERCEPTSELYTALL
Sbjct: 123 ALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARSLFDTMLEERCEPTSELYTALL 182

Query: 190 AAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEMAERLI 249
           AAYCRNNLID+AFSTLNLMKTLPGCQPDVYTYSTLIKACVD SRFE+VESLYEEMAERLI
Sbjct: 183 AAYCRNNLIDEAFSTLNLMKTLPGCQPDVYTYSTLIKACVDASRFEIVESLYEEMAERLI 242

Query: 250 TPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMME 309
           TPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLES+TCRPDVWTMNIILSVFGNKGQIEMME
Sbjct: 243 TPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESSTCRPDVWTMNIILSVFGNKGQIEMME 302

Query: 310 RWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAF 369
           RWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAF
Sbjct: 303 RWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAF 362

Query: 370 ADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           ADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK
Sbjct: 363 ADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 404

[Close]

BLAST of Lcy02g008460 vs. NCBI nr
Match: XP_023514865.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 743.8 bits (1919), Expect = 8.7e-211
Identity = 374/412 (90.78%), Postives = 389/412 (94.42%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPP 60
           MAAMASFSFSFSFSSSLLPSS+S DHG  SFSPI    S  SNT IVRCAFAAPARKSPP
Sbjct: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIV--PSPHSNTLIVRCAFAAPARKSPP 60

Query: 61  PPPPSSSSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSD 120
           P P  SSSP KK HWKQGEFPGIT+TSAPKKTPLKNVKKKLDR+N+AKAWANTVTEALSD
Sbjct: 61  PSP--SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKKKLDRENHAKAWANTVTEALSD 120

Query: 121 HIANKRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEP 180
           HIANKRW  ALEVFEMLREQPFYEPKEGTYMKL+VLLG+SGQP RAR++FD MVEERCE 
Sbjct: 121 HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEA 180

Query: 181 TSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESL 240
           TSELYTAL+AAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVES+
Sbjct: 181 TSELYTALIAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESV 240

Query: 241 YEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFG 300
           YEEMAERLI+PNTVTQNIVLSGYGKIGKY+QMEKVLLGMLEST+CRPDVWTMNIIL VFG
Sbjct: 241 YEEMAERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMLESTSCRPDVWTMNIILGVFG 300

Query: 301 NKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTS 360
           N+GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWTTS
Sbjct: 301 NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS 360

Query: 361 TYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           TYNNVIEAFADVGDA +MEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK
Sbjct: 361 TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 408

[Close]

BLAST of Lcy02g008460 vs. NCBI nr
Match: XP_022958884.1 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 740.0 bits (1909), Expect = 1.3e-209
Identity = 369/406 (90.89%), Postives = 383/406 (94.33%), Query Frame = 0


Query: 10  SFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPPPP---PPSS 69
           +FSFSSSLLPSS+SFDHGS+SF PI LS S DSN+R VRC FAAPARKSPPPP     SS
Sbjct: 3   AFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSSSS 62

Query: 70  SSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIANKR 129
           SSPVKK+HWKQGEFPG+TET   +KTPLKNVKKKLDRK NAKAWANTVTEALS+HI NKR
Sbjct: 63  SSPVKKKHWKQGEFPGVTETFDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKR 122

Query: 130 WFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYT 189
           W QALEVFEMLR+QPFYEPKEGTYMKLLVLLGRSGQPQRAR LFDTMVEE+CEPT+ELYT
Sbjct: 123 WIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYT 182

Query: 190 ALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEMAE 249
           ALLAAYCRNNLIDDAFS LNLMKTLP CQPD+YTYS LIKACVD SRFELVESLYEEMAE
Sbjct: 183 ALLAAYCRNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAE 242

Query: 250 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIE 309
           RLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIE
Sbjct: 243 RLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIE 302

Query: 310 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 369
           MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI
Sbjct: 303 MMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVI 362

Query: 370 EAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           EAFADVGDAKNMEYTF QMRAEGM+ADTKTFCCLINGY+NAGLFHK
Sbjct: 363 EAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHK 408

[Close]

BLAST of Lcy02g008460 vs. NCBI nr
Match: XP_008458291.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Cucumis melo])

HSP 1 Score: 739.6 bits (1908), Expect = 1.6e-209
Identity = 372/408 (91.18%), Postives = 384/408 (94.12%), Query Frame = 0


Query: 10  SFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDS-----NTRIVRCAFAAPARKSPPPPPP 69
           SFSFSSSLLPSS+SFDH ST   PIF+SSSS S     N+RIVRCAFAAP RKS  P P 
Sbjct: 3   SFSFSSSLLPSSVSFDHVSTFLFPIFVSSSSSSSSSHPNSRIVRCAFAAPTRKS--PVPS 62

Query: 70  SSSSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIAN 129
           +SSSP KKRHWKQGEFPGITET   +KTPLKNVKKKLDRKNNAKAWANTVTEALSDHI+N
Sbjct: 63  TSSSPAKKRHWKQGEFPGITETPTRRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHISN 122

Query: 130 KRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSEL 189
           KRW +ALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQP RAR LFDTM++ERCEPTSEL
Sbjct: 123 KRWLEALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMLQERCEPTSEL 182

Query: 190 YTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEM 249
           YTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYS LIKACVD SRFE+VESLYEEM
Sbjct: 183 YTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSILIKACVDASRFEIVESLYEEM 242

Query: 250 AERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQ 309
           A+RLITPNTVTQNIVLSGYGKIGKYDQMEKVL+GMLESTTCRPDVWTMNIILSVFGNKGQ
Sbjct: 243 AQRLITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGQ 302

Query: 310 IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN 369
           IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN
Sbjct: 303 IEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN 362

Query: 370 VIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           VIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK
Sbjct: 363 VIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 408

[Close]

BLAST of Lcy02g008460 vs. NCBI nr
Match: KAG7021088.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 738.8 bits (1906), Expect = 2.8e-209
Identity = 373/412 (90.53%), Postives = 388/412 (94.17%), Query Frame = 0


Query: 1   MAAMASFSFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPP 60
           MAAMASFSFSFSFSSSLLPSS+S DHG  SFSPI    S  SNT IVRCAFAAPARKSPP
Sbjct: 1   MAAMASFSFSFSFSSSLLPSSVSIDHGFVSFSPIV--PSPHSNTLIVRCAFAAPARKSPP 60

Query: 61  PPPPSSSSPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSD 120
           P P  SSSP KK HWKQGEFPGIT+TSAPKKTPLKNVKKKLDR+N+AKAWANTVTEALSD
Sbjct: 61  PSP--SSSPFKKTHWKQGEFPGITQTSAPKKTPLKNVKKKLDRENHAKAWANTVTEALSD 120

Query: 121 HIANKRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEP 180
           HIANKRW  ALEVFEMLREQPFYEPKEGTYMKL+VLLG+SGQP RAR++FD MVEERCE 
Sbjct: 121 HIANKRWLPALEVFEMLREQPFYEPKEGTYMKLIVLLGKSGQPHRARQIFDIMVEERCEA 180

Query: 181 TSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESL 240
           TSELYTAL+AAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVES+
Sbjct: 181 TSELYTALIAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESV 240

Query: 241 YEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFG 300
           YEEMAERLI+PNTVTQNIVLSGYGKIGKY+QMEKVLLGM+ESTTCRPDV TMNIIL VFG
Sbjct: 241 YEEMAERLISPNTVTQNIVLSGYGKIGKYEQMEKVLLGMVESTTCRPDVRTMNIILGVFG 300

Query: 301 NKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTS 360
           N+GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKM SVMEYMRKLQFPWTTS
Sbjct: 301 NEGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMCSVMEYMRKLQFPWTTS 360

Query: 361 TYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           TYNNVIEAFADVGDA +MEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK
Sbjct: 361 TYNNVIEAFADVGDATSMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 408

[Close]

BLAST of Lcy02g008460 vs. TAIR 10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 578.2 bits (1489), Expect = 5.9e-165
Identity = 296/405 (73.09%), Postives = 331/405 (81.73%), Query Frame = 0


Query: 8   SFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPPPPPPSSS 67
           S S SFSSSL  S +    G   F           +  IVRC  A  A KS P       
Sbjct: 3   SMSLSFSSSLCSSRI--PEGKRRF--------RHRDVGIVRCVLA--ASKSSP------G 62

Query: 68  SPVKKRHWKQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIANKRW 127
           S  KKR WK GEFPGITE    ++TP+KNVKKKLDR++ A  W NTVTE LSD IA K+W
Sbjct: 63  SVTKKRLWKDGEFPGITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQW 122

Query: 128 FQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYTA 187
            QALEVF+MLREQ FY+PKEGTYMKLLVLLG+SGQP RA+KLFD M+EE  EPT ELYTA
Sbjct: 123 LQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTA 182

Query: 188 LLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLYEEMAER 247
           LLAAY R+NLIDDAFS L+ MK+ P CQPDV+TYSTL+KACVD S+F+LV+SLY+EM ER
Sbjct: 183 LLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDER 242

Query: 248 LITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEM 307
           LITPNTVTQNIVLSGYG++G++DQMEKVL  ML ST C+PDVWTMNIILSVFGN G+I+M
Sbjct: 243 LITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDM 302

Query: 308 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 367
           ME WYEKFRNFGIEPETRTFNILIG+YGKKRMYDKMSSVMEYMRKL+FPWTTSTYNN+IE
Sbjct: 303 MESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIE 362

Query: 368 AFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
           AFADVGDAKNME TF+QMR+EGM+ADTKTFCCLINGYANAGLFHK
Sbjct: 363 AFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHK 389

[Close]

BLAST of Lcy02g008460 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 293.9 bits (751), Expect = 2.2e-79
Identity = 144/305 (47.21%), Postives = 193/305 (63.28%), Query Frame = 0


Query: 103 RKNNAKAWANTVTEALSDHIANKRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQ 162
           +K + K    TV E+L + I   RW  A++VFE+LREQ +Y+P  G Y+KL+V+LG+  Q
Sbjct: 106 KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQ 165

Query: 163 PQRARKLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYS 222
           P++A +LF  M+ E C    E+YTAL++AY R+   D AF+ L  MK+   CQPDV+TYS
Sbjct: 166 PEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYS 225

Query: 223 TLIKACVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLES 282
            LIK+ +    F+ V+ L  +M  + I PNT+T N ++  YGK   + +ME  L+ ML  
Sbjct: 226 ILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGE 285

Query: 283 TTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDK 342
             C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNIL+ +YGK   Y K
Sbjct: 286 DDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKK 345

Query: 343 MSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLIN 402
           MS+VMEYM+K  + WT  TYN VI+AF   GD K MEY F  M++E +     T C L+ 
Sbjct: 346 MSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVR 405

Query: 403 GYANA 408
            Y  A
Sbjct: 406 AYGRA 410

[Close]

BLAST of Lcy02g008460 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 265.8 bits (678), Expect = 6.5e-71
Identity = 150/413 (36.32%), Postives = 233/413 (56.42%), Query Frame = 0


Query: 2   AAMASFSFSFSFSSSLLPSSLSFDHGSTSFSPIFLSSSSDSNTRIVRCAFAAPARKSPPP 61
           +A A+      FS S++   +S        SP++       +     C+   P  ++   
Sbjct: 13  SAYANEIAQLGFSRSVVQQHIS--------SPVYFRCIPTISITPTMCSTKVPNERT--- 72

Query: 62  PPPSSSSPVKKRHW--KQGEFPGITETSAPKKTPLKNVKKKLDRKNNAKAWANTVTEALS 121
               +S  +  RH    + E   I  T A     +K +++K + +     W   V EAL 
Sbjct: 73  -EKMNSGLISTRHQVDPKKELSRILRTDA----AVKGIERKANSEKYLTLWPKAVLEALD 132

Query: 122 DHIANKRWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCE 181
           + I   RW  AL++F +LR+Q +YEP+  TY KL  +LG   QP +A  LF+ M+ E  +
Sbjct: 133 EAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLK 192

Query: 182 PTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVES 241
           PT ++YT+L++ Y ++ L+D AFSTL  MK++  C+PDV+T++ LI  C    RF+LV+S
Sbjct: 193 PTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKS 252

Query: 242 LYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVF 301
           +  EM+   +  +TVT N ++ GYGK G +++ME VL  M+E     PDV T+N I+  +
Sbjct: 253 IVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSY 312

Query: 302 GNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTT 361
           GN   +  ME WY +F+  G++P+  TFNILI ++GK  MY KM SVM++M K  F  TT
Sbjct: 313 GNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTT 372

Query: 362 STYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHK 413
            TYN VIE F   G  + M+  F +M+ +G++ ++ T+C L+N Y+ AGL  K
Sbjct: 373 VTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVK 409

[Close]

BLAST of Lcy02g008460 vs. TAIR 10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-39
Identity = 87/289 (30.10%), Postives = 145/289 (50.17%), Query Frame = 0


Query: 126 RWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELY 185
           +W Q LEVF  +++Q +Y P  G Y KL+ ++G+ GQ + A  LF  M    C P + +Y
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171

Query: 186 TALLAAYC----RNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLY 245
            AL+ A+     +   ++     L+ MK +  CQP+V TY+ L++A     + + V +L+
Sbjct: 172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231

Query: 246 EEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGN 305
           +++    ++P+  T N V+  YGK G   +ME VL  M  S  C+PD+ T N+++  +G 
Sbjct: 232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 291

Query: 306 KGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTST 365
           K + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  T
Sbjct: 292 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 351

Query: 366 YNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLF 411
           Y  +I  +   G        FE++          T   ++  Y   GL+
Sbjct: 352 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLY 399

[Close]

BLAST of Lcy02g008460 vs. TAIR 10
Match: AT4G39620.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-39
Identity = 87/289 (30.10%), Postives = 145/289 (50.17%), Query Frame = 0


Query: 126 RWFQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELY 185
           +W Q LEVF  +++Q +Y P  G Y KL+ ++G+ GQ + A  LF  M    C P + +Y
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171

Query: 186 TALLAAYC----RNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKACVDDSRFELVESLY 245
            AL+ A+     +   ++     L+ MK +  CQP+V TY+ L++A     + + V +L+
Sbjct: 172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231

Query: 246 EEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGN 305
           +++    ++P+  T N V+  YGK G   +ME VL  M  S  C+PD+ T N+++  +G 
Sbjct: 232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 291

Query: 306 KGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTST 365
           K + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  T
Sbjct: 292 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 351

Query: 366 YNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLF 411
           Y  +I  +   G        FE++          T   ++  Y   GL+
Sbjct: 352 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLY 399

The following BLAST results are available for this feature:

BLAST of Lcy02g008460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQU6	8.3e-164	73.09	Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop...	[more]
Q9FKC3	3.1e-78	47.21	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
Q9SCP4	5.2e-73	41.69	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]
Q9SV96	1.4e-38	30.10	Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop...	[more]
A7LN87	2.7e-37	30.03	Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4...	[more]

BLAST of Lcy02g008460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6E5	6.1e-210	90.89	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isofor...	[more]
A0A1S3C7L9	7.9e-210	91.18	pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis ...	[more]
A0A6J1EVC0	3.9e-209	90.05	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cuc...	[more]
A0A6J1L0G6	6.7e-209	84.01	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cuc...	[more]
A0A6J1KKQ9	8.8e-209	89.86	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cuc...	[more]

BLAST of Lcy02g008460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875824.1	2.6e-215	93.80	pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Benincasa ...	[more]
XP_023514865.1	8.7e-211	90.78	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucur...	[more]
XP_022958884.1	1.3e-209	90.89	pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isofor...	[more]
XP_008458291.1	1.6e-209	91.18	PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic ...	[more]
KAG7021088.1	2.8e-209	90.53	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]

BLAST of Lcy02g008460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06430.1	5.9e-165	73.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48730.1	2.2e-79	47.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53170.1	6.5e-71	36.32	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39620.1	1.0e-39	30.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39620.2	1.0e-39	30.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 357..405 e-value: 1.6E-4 score: 21.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 182..229 e-value: 4.4E-13 score: 49.2 coord: 287..334 e-value: 6.2E-8 score: 32.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 254..288 e-value: 1.1E-4 score: 20.1 coord: 291..322 e-value: 0.0018 score: 16.3 coord: 326..354 e-value: 3.7E-5 score: 21.6 coord: 219..252 e-value: 1.5E-5 score: 22.9 coord: 149..181 e-value: 1.3E-4 score: 19.9 coord: 184..218 e-value: 1.2E-6 score: 26.3 coord: 361..393 e-value: 3.6E-4 score: 18.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 149..178 e-value: 0.047 score: 14.0 coord: 257..281 e-value: 0.065 score: 13.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 217..251 score: 10.939435
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 146..180 score: 9.821383
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 252..287 score: 8.834866
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 358..392 score: 9.536388
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 323..357 score: 8.549871
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 288..322 score: 9.656963
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 357..415 e-value: 4.7E-10 score: 41.1 coord: 88..228 e-value: 1.3E-29 score: 104.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 232..356 e-value: 1.4E-26 score: 95.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..93
None	No IPR available	PANTHER	PTHR47932:SF4	OS03G0309800 PROTEIN	coord: 8..412
None	No IPR available	PANTHER	PTHR47932	ATPASE EXPRESSION PROTEIN 3	coord: 8..412

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g008460.1	Lcy02g008460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009553	embryo sac development
biological_process	GO:0009555	pollen development
biological_process	GO:0048868	pollen tube development
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0019843	rRNA binding