Lcy02g008240 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g008240
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr02: 12432660 .. 12433847 (-)
RNA-Seq Expression	Lcy02g008240
Synteny	Lcy02g008240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTGGACGTTGGATTGGATGAAGGTGATGTTGGTCGATCTGAACCCGTACCTCTAGATGGTGAGAACATAACCTTCATTCAAAGCTCCACTGAATGGACGCAAAAGCGAGATGACCTAGCGAACAGGATGTTCAACGCGTGGGGACAACATATTCCCTGATCCAGTTTCGACATACGACTATCTGCTATGTTGTAATTTATACAGTTTTGACATTTCTTCGGCCGTACATTTTTTCTACAATCTAAACGATCTATTCCATGTAACTCAGTTTAGATTTATGGAAAACAATCGTTCATGTTGTTATTCTACATTATGTTTCTAACTTCTTGTCTGCGATTACTTCATAACTAACTATTCTACATTATGTCGCCGATAGTGTGAATTGATCAGAATACATACTTACGAAATCTAATGACACAATACTTTATGCATGTAGACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGTACGATCATTAGTCATTCATTGATGTAAATCATGTACAATATCGTTGCTAAAACACTCTTCAATACATGCAGTCACACTCGGCCGCAAAGGGGTTGCTGAACAAGCCATTTCCTCATTACTAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA

mRNA sequence

ATGGGTCTGGACGTTGGATTGGATGAAGGTGATGTTGGTCGATCTGAACCCGTACCTCTAGATGGTGAGAACATAACCTTCATTCAAAGCTCCACTGAATGGACGCAAAAGCGAGATGACCTAGCGAACAGGATGTTCAACGCACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA

Coding sequence (CDS)

ATGGGTCTGGACGTTGGATTGGATGAAGGTGATGTTGGTCGATCTGAACCCGTACCTCTAGATGGTGAGAACATAACCTTCATTCAAAGCTCCACTGAATGGACGCAAAAGCGAGATGACCTAGCGAACAGGATGTTCAACGCACTAATGGCAGGTGCAGATAAACAACAGAAGCACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCTTCCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCAGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGATCTTGCTTTCGTGTTCGACAAAGACTGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGAAACAGGCAGAAAACACCCACGGGGACGACGGGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCTTGATATTATGA

Protein sequence

MGLDVGLDEGDVGRSEPVPLDGENITFIQSSTEWTQKRDDLANRMFNALMAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKDLAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTSRPSTAGSSQSRKRSRASYEAEALIL

Homology

[Close]

BLAST of Lcy02g008240 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.7e-44
Identity = 110/269 (40.89%), Postives = 157/269 (58.36%), Query Frame = 0


Query: 8   DEGDVGRSEPVPLDGENITFIQSSTEWTQKRDDLANRMFNAL-MAGADKQQKHIWTRQEE 67
           DEGD   +       E+I +I+++ EW+Q RD+LA  MF    M+ +++  +H+WTR+EE
Sbjct: 11  DEGD--STYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWHMSTSNRAPRHVWTREEE 70

Query: 68  ARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQ 127
             LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C + +T+VIDC++++LKR 
Sbjct: 71  GTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRT 130

Query: 128 YSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK-----------------DLAFVFD 187
           + AI+EM GP CSGFGWNDE KCI AE+E++D WV+                 +L +VF 
Sbjct: 131 FQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFC 190

Query: 188 KDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTS 247
           +D A+G      A    N   + GG  +     D     PP  +   D+  +DV  +  S
Sbjct: 191 RDRATGRFAETFADVGSN---EPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVCASRPS 250

Query: 248 RPS---TAGSSQSRKR-SRASYEAEALIL 255
           R S   T  S   RKR S+  +E EA+ L
Sbjct: 251 RASEGRTGSSGSKRKRGSQRDFELEAIHL 274

[Close]

BLAST of Lcy02g008240 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-40
Identity = 81/156 (51.92%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 8   DEGDVGRSEPVPLDGENITFIQSSTEWTQKRDDLANRMF-NALMAGADKQQKHIWTRQEE 67
           DEGD   +       E+I +I+++ EW+Q RDDLA  MF +  M+ +++  +H+WTR+EE
Sbjct: 295 DEGD--STYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWHMSTSNRAPRHVWTREEE 354

Query: 68  ARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQ 127
             LVE L+ELV  GGW+ DNGTFR+GYLA+L RM+ +K+  C + +T+VIDC++++LKR 
Sbjct: 355 GTLVECLMELVSMGGWKSDNGTFRSGYLAQLVRMMAEKL-RCQVRATTVIDCRIKTLKRT 414

Query: 128 YSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK 163
           + AI+EM GP CSGFGWNDE KCI AE+E++D WV+
Sbjct: 415 FQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 447

[Close]

BLAST of Lcy02g008240 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 94/226 (41.59%), Postives = 133/226 (58.85%), Query Frame = 0


Query: 50  MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCT 109
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 110 IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK------- 169
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+       
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 170 ----------DLAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDI 229
                     +L +VF +D A+G      A    N   + GG  +     D     PP  
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSN---EPGGGYDRFDMGDGNEDFPPVY 180

Query: 230 NLAADMDFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALIL 255
           +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ L
Sbjct: 181 SQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL 223

[Close]

BLAST of Lcy02g008240 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 94/226 (41.59%), Postives = 133/226 (58.85%), Query Frame = 0


Query: 50  MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCT 109
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 110 IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK------- 169
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+       
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 170 ----------DLAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDI 229
                     +L +VF +D A+G      A    N   + GG  +     D     PP  
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSN---EPGGGYDRFDMGDGNEDFPPVY 180

Query: 230 NLAADMDFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALIL 255
           +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ L
Sbjct: 181 SQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL 223

[Close]

BLAST of Lcy02g008240 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 94/226 (41.59%), Postives = 133/226 (58.85%), Query Frame = 0


Query: 50  MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCT 109
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 110 IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK------- 169
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+       
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 170 ----------DLAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDI 229
                     +L +VF +D A+G      A    N   + GG  +     D     PP  
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSN---EPGGGYDRFDMGDGNEDFPPVY 180

Query: 230 NLAADMDFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALIL 255
           +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ L
Sbjct: 181 SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHL 223

[Close]

BLAST of Lcy02g008240 vs. NCBI nr
Match: KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 3.5e-44
Identity = 110/269 (40.89%), Postives = 157/269 (58.36%), Query Frame = 0


Query: 8   DEGDVGRSEPVPLDGENITFIQSSTEWTQKRDDLANRMFNAL-MAGADKQQKHIWTRQEE 67
           DEGD   +       E+I +I+++ EW+Q RD+LA  MF    M+ +++  +H+WTR+EE
Sbjct: 11  DEGD--STYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWHMSTSNRAPRHVWTREEE 70

Query: 68  ARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQ 127
             LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C + +T+VIDC++++LKR 
Sbjct: 71  GTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRT 130

Query: 128 YSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK-----------------DLAFVFD 187
           + AI+EM GP CSGFGWNDE KCI AE+E++D WV+                 +L +VF 
Sbjct: 131 FQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFC 190

Query: 188 KDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDINLAADMDFEDVPITPTS 247
           +D A+G      A    N   + GG  +     D     PP  +   D+  +DV  +  S
Sbjct: 191 RDRATGRFAETFADVGSN---EPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVCASRPS 250

Query: 248 RPS---TAGSSQSRKR-SRASYEAEALIL 255
           R S   T  S   RKR S+  +E EA+ L
Sbjct: 251 RASEGRTGSSGSKRKRGSQRDFELEAIHL 274

[Close]

BLAST of Lcy02g008240 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 6.9e-40
Identity = 81/156 (51.92%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 8   DEGDVGRSEPVPLDGENITFIQSSTEWTQKRDDLANRMF-NALMAGADKQQKHIWTRQEE 67
           DEGD   +       E+I +I+++ EW+Q RDDLA  MF +  M+ +++  +H+WTR+EE
Sbjct: 295 DEGD--STYATTTASEDIQYIETTNEWSQWRDDLAASMFIDWHMSTSNRAPRHVWTREEE 354

Query: 68  ARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKVRSLKRQ 127
             LVE L+ELV  GGW+ DNGTFR+GYLA+L RM+ +K+  C + +T+VIDC++++LKR 
Sbjct: 355 GTLVECLMELVSMGGWKSDNGTFRSGYLAQLVRMMAEKL-RCQVRATTVIDCRIKTLKRT 414

Query: 128 YSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK 163
           + AI+EM GP CSGFGWNDE KCI AE+E++D WV+
Sbjct: 415 FQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 447

[Close]

BLAST of Lcy02g008240 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 9.0e-40
Identity = 109/272 (40.07%), Postives = 155/272 (56.99%), Query Frame = 0


Query: 1   MGLDVGLDEGDVGRSEPVPLDGENITFIQSSTEWTQKRDDLANRMFNALMAGADKQQKHI 60
           MG+   LD  D      V LD ++I F++SS EWT+ RDDLA      +MAG  K+ KH+
Sbjct: 1   MGISAMLDVPDEENFASVGLDEDHIEFVESSEEWTKFRDDLA---VEIIMAGNGKKSKHV 60

Query: 61  WTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCTIESTSVIDCKV 120
           W++ E+A+LVE+L+ LV E GWR DNGTFR GYL  L++++ +K+P C + + + I+CKV
Sbjct: 61  WSKVEDAKLVEALLYLV-ETGWRFDNGTFRPGYLQHLEQILHEKVPGCAL-NHNTIECKV 120

Query: 121 RSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWV-----------------KD 180
           RSLK+QY+A+SEML    SG GWN+EFKC+  ERE++D WV                  D
Sbjct: 121 RSLKKQYNAVSEMLSQ--SGLGWNEEFKCVHVEREIFDLWVWSHPNAKRMWNKPFPHYDD 180

Query: 181 LAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVP--APPDINLAADMDFE 240
           L+ +F KD A G       + +EN +             DC+ P     +  L  D   E
Sbjct: 181 LSTIFGKDRAVG-------QSSENPY-----------VMDCHTPEVRQTESPLNQDEIDE 240

Query: 241 DVPITPTSRPST-AGSSQSRKRSRASYEAEAL 253
           +     T R S  A SS+S KR+R+S++ E +
Sbjct: 241 EPAEQSTGRASVPAESSRSNKRNRSSFQVEMI 247

[Close]

BLAST of Lcy02g008240 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 3.8e-38
Identity = 94/226 (41.59%), Postives = 133/226 (58.85%), Query Frame = 0


Query: 50  MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCT 109
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 110 IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK------- 169
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+       
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 170 ----------DLAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDI 229
                     +L +VF +D A+G      A    N   + GG  +     D     PP  
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSN---EPGGGYDRFDMGDGNEDFPPVY 180

Query: 230 NLAADMDFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALIL 255
           +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ L
Sbjct: 181 SQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHL 223

[Close]

BLAST of Lcy02g008240 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 3.8e-38
Identity = 94/226 (41.59%), Postives = 133/226 (58.85%), Query Frame = 0


Query: 50  MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPSCT 109
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 110 IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVK------- 169
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+       
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 170 ----------DLAFVFDKDWASGGACNVPAKQAENTHGDDGGDQNVQAEQDCYVPAPPDI 229
                     +L +VF +D A+G      A    N   + GG  +     D     PP  
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSN---EPGGGYDRFDMGDGNEDFPPVY 180

Query: 230 NLAADMDFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALIL 255
           +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ L
Sbjct: 181 SQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL 223

The following BLAST results are available for this feature:

BLAST of Lcy02g008240 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g008240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T091	1.7e-44	40.89	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SYW1	3.4e-40	51.92	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TRV1	1.8e-38	41.59	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	1.8e-38	41.59	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCN9	1.8e-38	41.59	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy02g008240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036924.1	3.5e-44	40.89	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036474.1	6.9e-40	51.92	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_038892629.1	9.0e-40	40.07	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
TYJ96194.1	3.8e-38	41.59	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p...	[more]
KAA0032766.1	3.8e-38	41.59	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy02g008240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 61..159 e-value: 5.8E-7 score: 30.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..254
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 54..222
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 54..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g008240.1	Lcy02g008240.1	mRNA