Lcy02g007720 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g007720
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribosomal_S7 domain-containing protein
Location	Chr02: 11151914 .. 11153709 (-)
RNA-Seq Expression	Lcy02g007720
Synteny	Lcy02g007720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGGTACAAGATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAAGTGGGGCCTGCATGAAGGAGTCAGATGCTTCTTCTATTCTTTTATTCTTTTCCTTGGCGTAGCTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAAATCATCGCACCTACGGTCCAACCAATTGGGAGAGAATCAATAGATTCCTTTTCGGGAGCGATTCATCCTTCCCGAACGCAGCATACAACTCTCCGTTGTACTGCGCTCTCCAAGTGTGCTTGTTCCCCCCTTCTTCCTTACCATGGCAAGTCTTTGTGAAATAACTCCGATGAGAAGAAAAAAGAAGGCGTTAAGAAACCCTCCTGGCCCAACCCTAGACACTCTAAGATCCTTTTTCAAACCTGCTCCCATTTCGAGTCAAGAGATAGATAAATAGACACATCCCATTGCACTGATCGGGGGTGTTCGTAGTGACTGAGGGGGTCGACGACCAAGAAGTGAGTTATTTATCAGCCAAACATTCTTCTTACGGCTAGATCCAATCTCCTGGTCCCTGCGGAAGAAAGGAAAAAGAATTTCACGTTCTTCCTTTCGCTTTCGGGAAGGGAGGATTAAGAAAATCCTATTGATTGCAGCTTTCTCCAGACCTCCGGGAAAAGCATGAAAAAAAAGGCTCGAATGGTACGATCCCTCCGTCACCCCAGAATGAAAGGGGCGATCTCGTAGTTCTTGGTCTGTGAAGATACGTTGTTAGGTGCTCCGTTTTATTTTCCCATTGAGGCCGAACCTAAACCTGTGCTCGAGAGATAGCTGTCCATATACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCCGAGGTGGTCCCCCCCGGACCGCCCGGATCCCACGAGTGAATAGAAAGTTGGATCTACATTGGATCTCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGGTTTCAAACCCCGGTTCGAACAGGAGAAGTACGCCATGCTAATGTGCCTTGGATGATCCACATCTCAGGGTCAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCACAACGACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTCGTGCGGGCCTCCCGCTGGGGGCCCGCTATGCCAAAAGCGAGAGAAACCCCATCCCTCTCTTTCCTTTTTTCGCCCCCATGTCGCCACACGGGAGGGACATGGGGACGTAAAAAAGGGGATCCTATCAACTTGTTCCGACCTAGGATAATAAGCTCATGAGCTTAGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCCATCTCCAAGTTTAACTCAGACGTAGCTCGCTTCTTTTTGGGTGTGAAGCAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

mRNA sequence

ATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGCTTTCTCCAGACCTCCGGGAAAAGCATGAAAAAAAAGGCTCGAATGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

Coding sequence (CDS)

ATGTTTCGGTCCTCTTCCCCATTACTTAGAAAAAGTGAGCCACCGGTTCAGCTTTCTCCAGACCTCCGGGAAAAGCATGAAAAAAAAGGCTCGAATGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

Protein sequence

MFRSSSPLLRKSEPPVQLSPDLREKHEKKGSNVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

Homology

[Close]

BLAST of Lcy02g007720 vs. ExPASy TrEMBL
Match: A0A218VSE2 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004983 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           +SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 1   MSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 60

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 61  GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 95

[Close]

BLAST of Lcy02g007720 vs. ExPASy TrEMBL
Match: A0A5N6P537 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_12293 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.6e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 89  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 148

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADR+LLAIPASCRRVAA NPN
Sbjct: 149 GGVYKARERIHRRMADRQLLAIPASCRRVAACNPN 183

[Close]

BLAST of Lcy02g007720 vs. ExPASy TrEMBL
Match: A0A078E1E5 (BnaC09g29260D protein OS=Brassica napus OX=3708 GN=BnaC09g29260D PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           VSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASSHSVT
Sbjct: 8   VSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASSHSVT 67

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 68  GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of Lcy02g007720 vs. ExPASy TrEMBL
Match: A0A6D2HHK8 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS412 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           VSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASSHSVT
Sbjct: 8   VSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASSHSVT 67

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 68  GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of Lcy02g007720 vs. ExPASy TrEMBL
Match: A0A151S2B1 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_029343 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 38  TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 97
           TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK
Sbjct: 1   TQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYK 60

Query: 98  ARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           ARERIHRRMADRRLLAIPASCRRVAAYNPN
Sbjct: 61  ARERIHRRMADRRLLAIPASCRRVAAYNPN 90

[Close]

BLAST of Lcy02g007720 vs. NCBI nr
Match: KAG4154841.1 (hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 611 VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 670

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 671 GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 705

[Close]

BLAST of Lcy02g007720 vs. NCBI nr
Match: KAG4211951.1 (hypothetical protein ERO13_A02G134101v2 [Gossypium hirsutum])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 632 VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 691

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 692 GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 726

[Close]

BLAST of Lcy02g007720 vs. NCBI nr
Match: OWM63425.1 (hypothetical protein CDL15_Pgr022170 [Punica granatum] >OWM76771.1 hypothetical protein CDL15_Pgr004983 [Punica granatum])

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           +SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 1   MSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 60

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 61  GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 95

[Close]

BLAST of Lcy02g007720 vs. NCBI nr
Match: KAD5960821.1 (hypothetical protein E3N88_12293 [Mikania micrantha])

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 89  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 148

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADR+LLAIPASCRRVAA NPN
Sbjct: 149 GGVYKARERIHRRMADRQLLAIPASCRRVAACNPN 183

[Close]

BLAST of Lcy02g007720 vs. NCBI nr
Match: CAF1728903.1 (unnamed protein product [Brassica napus] >VDD65840.1 unnamed protein product [Brassica oleracea] >CAF1751061.1 unnamed protein product [Brassica napus] >CAF1831100.1 unnamed protein product [Brassica napus] >CDY19670.1 BnaC09g29260D [Brassica napus])

HSP 1 Score: 181.0 bits (458), Expect = 6.3e-42
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 33  VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 92
           VSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASSHSVT
Sbjct: 8   VSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASSHSVT 67

Query: 93  GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 128
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 68  GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

The following BLAST results are available for this feature:

BLAST of Lcy02g007720 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g007720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218VSE2	1.2e-43	97.89	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004983 PE=4 SV=1	[more]
A0A5N6P537	1.6e-43	97.89	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_12293 PE=4 SV=1	[more]
A0A078E1E5	3.1e-42	95.79	BnaC09g29260D protein OS=Brassica napus OX=3708 GN=BnaC09g29260D PE=4 SV=1	[more]
A0A6D2HHK8	3.1e-42	95.79	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS412 PE...	[more]
A0A151S2B1	3.1e-42	100.00	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_029343 PE=4 S...	[more]

BLAST of Lcy02g007720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4154841.1	1.2e-43	98.95	hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum]	[more]
KAG4211951.1	1.2e-43	98.95	hypothetical protein ERO13_A02G134101v2 [Gossypium hirsutum]	[more]
OWM63425.1	2.6e-43	97.89	hypothetical protein CDL15_Pgr022170 [Punica granatum] >OWM76771.1 hypothetical ...	[more]
KAD5960821.1	3.3e-43	97.89	hypothetical protein E3N88_12293 [Mikania micrantha]	[more]
CAF1728903.1	6.3e-42	95.79	unnamed protein product [Brassica napus] >VDD65840.1 unnamed protein product [Br...	[more]

BLAST of Lcy02g007720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR38146:SF11	BNAC09G29260D PROTEIN	coord: 31..127
None	No IPR available	PANTHER	PTHR38146	FAMILY NOT NAMED	coord: 31..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g007720.1	Lcy02g007720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast