Lcy02g007710 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g007710
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	Chr02: 11151124 .. 11151615 (-)
RNA-Seq Expression	Lcy02g007710
Synteny	Lcy02g007710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCCCTGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAG

mRNA sequence

ATGTCAAGCCCTGGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAG

Coding sequence (CDS)

ATGTCAAGCCCTGGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAG

Protein sequence

MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS

Homology

[Close]

BLAST of Lcy02g007710 vs. ExPASy TrEMBL
Match: M1DBW2 (30S ribosomal protein S12, chloroplastic OS=Solanum tuberosum OX=4113 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 70  MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 129

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS
Sbjct: 130 FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 189

Query: 121 VLPRLLAQS 130
           VLPRLLAQ+
Sbjct: 190 VLPRLLAQN 198

[Close]

BLAST of Lcy02g007710 vs. ExPASy TrEMBL
Match: A0A6D2K5V7 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS30720 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FFPISTHFTAPPEIPSAPTVL+LGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS
Sbjct: 61  FFPISTHFTAPPEIPSAPTVLKLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120

Query: 121 VLPRLLAQS 130
           VLPRLLAQS
Sbjct: 121 VLPRLLAQS 129

[Close]

BLAST of Lcy02g007710 vs. ExPASy TrEMBL
Match: A0A151S2A8 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_029344 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIR APSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 50  MSSPGGILNALATALHGSIRAAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 109

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTA+LKSHLQTLYAQSFRITLASS
Sbjct: 110 FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFRITLASS 169

Query: 121 VLPRLLAQS 130
           VLPRLLAQS
Sbjct: 170 VLPRLLAQS 178

[Close]

BLAST of Lcy02g007710 vs. ExPASy TrEMBL
Match: S8D511 (Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00222 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.2e-63
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 3   SPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFF 62
           SPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFF
Sbjct: 1   SPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFF 60

Query: 63  PISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVL 122
           PISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVL
Sbjct: 61  PISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVL 120

Query: 123 PRLLAQS 130
           PRLLAQ+
Sbjct: 121 PRLLAQN 127

[Close]

BLAST of Lcy02g007710 vs. ExPASy TrEMBL
Match: A0A5A7VJP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002460 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.2e-63
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 141 MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 200

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FF ISTHFTAPP+IPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS
Sbjct: 201 FFSISTHFTAPPKIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 260

Query: 121 VLPRLLAQS 130
           VLPRLLAQS
Sbjct: 261 VLPRLLAQS 269

[Close]

BLAST of Lcy02g007710 vs. NCBI nr
Match: CAA7043485.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FFPISTHFTAPPEIPSAPTVL+LGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS
Sbjct: 61  FFPISTHFTAPPEIPSAPTVLKLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120

Query: 121 VLPRLLAQS 130
           VLPRLLAQS
Sbjct: 121 VLPRLLAQS 129

[Close]

BLAST of Lcy02g007710 vs. NCBI nr
Match: KAG4944832.1 (hypothetical protein JHK85_049478 [Glycine max] >KAG4944833.1 hypothetical protein JHK85_049479 [Glycine max] >KAG5107057.1 hypothetical protein JHK82_044027 [Glycine max])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 60  MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 119

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTA+LKSHLQTLYAQSFRITLASS
Sbjct: 120 FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFRITLASS 179

Query: 121 VLPRLLAQS 130
           VLPRLLAQS
Sbjct: 180 VLPRLLAQS 188

[Close]

BLAST of Lcy02g007710 vs. NCBI nr
Match: KAG4976582.1 (hypothetical protein JHK86_036056 [Glycine max])

HSP 1 Score: 251.5 bits (641), Expect = 3.9e-63
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTA+LKSHLQTLYAQSFRITLASS
Sbjct: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFRITLASS 120

Query: 121 VLPRLLAQ 129
           VLPRLLAQ
Sbjct: 121 VLPRLLAQ 128

[Close]

BLAST of Lcy02g007710 vs. NCBI nr
Match: KYP48943.1 (hypothetical protein KK1_029344, partial [Cajanus cajan])

HSP 1 Score: 251.1 bits (640), Expect = 5.0e-63
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIR APSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 50  MSSPGGILNALATALHGSIRAAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 109

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTA+LKSHLQTLYAQSFRITLASS
Sbjct: 110 FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTANLKSHLQTLYAQSFRITLASS 169

Query: 121 VLPRLLAQS 130
           VLPRLLAQS
Sbjct: 170 VLPRLLAQS 178

[Close]

BLAST of Lcy02g007710 vs. NCBI nr
Match: KAA0068048.1 (hypothetical protein E6C27_scaffold138G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 8.6e-63
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 60
           MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV
Sbjct: 141 MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLV 200

Query: 61  FFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 120
           FF ISTHFTAPP+IPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS
Sbjct: 201 FFSISTHFTAPPKIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASS 260

Query: 121 VLPRLLAQS 130
           VLPRLLAQS
Sbjct: 261 VLPRLLAQS 269

The following BLAST results are available for this feature:

BLAST of Lcy02g007710 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g007710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M1DBW2	3.8e-64	99.22	30S ribosomal protein S12, chloroplastic OS=Solanum tuberosum OX=4113 PE=3 SV=1	[more]
A0A6D2K5V7	4.9e-64	99.22	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS30720 ...	[more]
A0A151S2A8	2.4e-63	98.45	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_029344 PE=4 S...	[more]
S8D511	4.2e-63	99.21	Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00222 PE=...	[more]
A0A5A7VJP9	4.2e-63	98.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy02g007710 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA7043485.1	1.0e-63	99.22	unnamed protein product [Microthlaspi erraticum]	[more]
KAG4944832.1	1.3e-63	99.22	hypothetical protein JHK85_049478 [Glycine max] >KAG4944833.1 hypothetical prote...	[more]
KAG4976582.1	3.9e-63	99.22	hypothetical protein JHK86_036056 [Glycine max]	[more]
KYP48943.1	5.0e-63	98.45	hypothetical protein KK1_029344, partial [Cajanus cajan]	[more]
KAA0068048.1	8.6e-63	98.45	hypothetical protein E6C27_scaffold138G002460 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy02g007710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38146	FAMILY NOT NAMED	coord: 3..92
None	No IPR available	PANTHER	PTHR38146:SF8	BNACNNG13060D PROTEIN	coord: 3..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g007710.1	Lcy02g007710.1	mRNA