Lcy02g007560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g007560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zinc finger CCHC domain-containing protein 10
Location	Chr02: 10380592 .. 10382566 (+)
RNA-Seq Expression	Lcy02g007560
Synteny	Lcy02g007560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTCTTCTTCACTTCTTCTTCAAGCCGTTTCCTCCTCCAGCAGCTCAGCGTCGCCGTCTTTCTTCCGCTCGTGCCGCCGCCACTGTCGTCTTTCTTCCGTTCGTGCCGCCACAGCCTCCCTCGATTTTCTCCTCCCTTGCTGTTACCGGTATTTTCCCAATCTCCATCTATGCCTTTCTGCTTACTTGAAAAACACAAATTAGGTTTTGAGACGATGCATTCTTGGCAGAGAGAAAAGGAGTTGGATTGAAAGAAAAAACCAAACCAGATTGAAGGGGAATTGGATTGAGAAAAAAATATATTTCTTCTGCTTAGCCGAGATCGCCTTCTATTGCCTTGCCAACTGGATTCCGCTTCATCTTCGATCCCCAAGGTATGTTCTAACTGCGATTCCTCTTCTTTCAACTGTTTTTGAGGGATTGGTAGCTGCAAACTTTGCCAAATTTGACTCGATCTTCCGATTTTCCCCTTTGGTTTACGAACCATCGATTAGAAGTCGGCGGCGTTCTATTTCGATTACGATCCCTCAATCAGAAATGTTACAATTTTCTTTGATTATGTTGTTTAGGCTAAAATTTCATCTTATTTTTTTCGCTTTTACGGTAACTGGTAGTAACCCTAATACTTCTTGCTCTATTTTTTGTTCTTTCTTTGTTTTTTGTACGTTCAATGTGCTCTTAATCTGGAGATTTCCTACGATCTTATTCTTTCAATTTATTTTCCATCTGGGTATTTACATTCAGATGTTGAAGCTGCCGCATGTCTTATAAGAAGGAAACCTAATGCTTCCCACTTCCTGTTTTGTTGTATTCTCTTAATTTGGGAATTCATCGCAATCTTATTCTTCAATTTCCGTTTGTTCTTTGCCAGTGTATTTAGATTCAGTCATTGAAACAAAGCATGTCTAGTAAGAAGGAGGAGAAGTCACAAGCTGCTGCTGAAAGGATTAAGGCTGCAGCTCTTAGTGCTGCAAAAGGCCTTAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAAAAGGAAGAAGGCCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAGAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGCCTCTATGTCTAGTACTGGTGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGACACTGGACGTATGAATGCAAAAATGAACGAGTTTACATATCGCGACCATCTCGAACTCAACAACTAAAAAATCCCAAGTTGAGGATGAAGATGACAGTCTCATATGAGTTGGACAACCCAGATTCTGGTAAGGAGAAGAAAGCCGAGAAGCATTTGAAGAAGAAAAGTAAAAGAAAGCATCGGTCCAACGCAAGATCCAATAGCGATAGTGAGGCGTCTGTTTTTGAGACCGATAGTGGGTCATCCTCAGTTACGGGTTCTGATGATTCTTCTGAAGAAAGCAGTTCAGACTACAGTTCTTTATCTGAATCAGAATCAGAAAGAAGTCGGAGTAGGAGAAAGAAGCAGAAGAGGGGAAGGAGAAAGAGGAGGTACAGCTCTTCTGAATCTTCTGATTCAGACTCAGGGTCTGAATCCGAATCTGATTATGAGGACAAACGTAGTAGGAGGAAGAGCCGAAGGCACAACAGAAGACGCTAGCTTTAGCTAAGATATTCGATCAAGTGAAGCGAATTAGAAGGGTCCATATATTTGCAACTCTAGTCATTCTAGAGGTTTGAGTTCATTCCGTTTCTTGTTTTTAGTTGTTCAACCTGAACTAGGGACACTCTGAATAGAAGAGTTGTAATGTGTAAACTGGAGTTTGGGCTTTTTTTTCTAATTGTATAAATTGTTGATGCTTCCCTAGCTTTTATGTTACGGATGCTGGTAGAAGCAAGGATGTTGCTTTTTGAATAAATTTAGTTAGGCTATGTTTGGGAG

mRNA sequence

ACGTCTTCTTCACTTCTTCTTCAAGCCGTTTCCTCCTCCAGCAGCTCAGCGTCGCCGTCTTTCTTCCGCTCGTGCCGCCGCCACTGTCGTCTTTCTTCCGTTCGTGCCGCCACAGCCTCCCTCGATTTTCTCCTCCCTTGCTGTTACCGAGAGAAAAGGAGTTGGATTGAAAGAAAAAACCAAACCAGATTGAAGGGGAATTGGATTGAGAAAAAAATATATTTCTTCTGCTTAGCCGAGATCGCCTTCTATTGCCTTGCCAACTGGATTCCGCTTCATCTTCGATCCCCAAGTGTATTTAGATTCAGTCATTGAAACAAAGCATGTCTAGTAAGAAGGAGGAGAAGTCACAAGCTGCTGCTGAAAGGATTAAGGCTGCAGCTCTTAGTGCTGCAAAAGGCCTTAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAAAAGGAAGAAGGCCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAGAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGCCTCTATGTCTAGTACTGGTGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGACACTGGACGTATGAATGCAAAAATGAACGAGTTTACATATCGCGACCATCTCGAACTCAACAACTAAAAAATCCCAAGTTGAGGATGAAGATGACAGTCTCATATGAGTTGGACAACCCAGATTCTGGTAAGGAGAAGAAAGCCGAGAAGCATTTGAAGAAGAAAAGTAAAAGAAAGCATCGGTCCAACGCAAGATCCAATAGCGATAGTGAGGCGTCTGTTTTTGAGACCGATAGTGGGTCATCCTCAGTTACGGGTTCTGATGATTCTTCTGAAGAAAGCAGTTCAGACTACAGTTCTTTATCTGAATCAGAATCAGAAAGAAGTCGGAGTAGGAGAAAGAAGCAGAAGAGGGGAAGGAGAAAGAGGAGGTACAGCTCTTCTGAATCTTCTGATTCAGACTCAGGGTCTGAATCCGAATCTGATTATGAGGACAAACGTAGTAGGAGGAAGAGCCGAAGGCACAACAGAAGACGCTAGCTTTAGCTAAGATATTCGATCAAGTGAAGCGAATTAGAAGGGTCCATATATTTGCAACTCTAGTCATTCTAGAGGTTTGAGTTCATTCCGTTTCTTGTTTTTAGTTGTTCAACCTGAACTAGGGACACTCTGAATAGAAGAGTTGTAATGTGTAAACTGGAGTTTGGGCTTTTTTTTCTAATTGTATAAATTGTTGATGCTTCCCTAGCTTTTATGTTACGGATGCTGGTAGAAGCAAGGATGTTGCTTTTTGAATAAATTTAGTTAGGCTATGTTTGGGAG

Coding sequence (CDS)

ATGTCTAGTAAGAAGGAGGAGAAGTCACAAGCTGCTGCTGAAAGGATTAAGGCTGCAGCTCTTAGTGCTGCAAAAGGCCTTAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAAAAGGAAGAAGGCCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAGAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGCCTCTATGTCTAGTACTGGTGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGACACTGGACGTATGAATGCAAAAATGAACGAGTTTACATATCGCGACCATCTCGAACTCAACAACTAAAAAATCCCAAGTTGAGGATGAAGATGACAGTCTCATATGAGTTGGACAACCCAGATTCTGGTAAGGAGAAGAAAGCCGAGAAGCATTTGAAGAAGAAAAGTAAAAGAAAGCATCGGTCCAACGCAAGATCCAATAGCGATAGTGAGGCGTCTGTTTTTGAGACCGATAGTGGGTCATCCTCAGTTACGGGTTCTGATGATTCTTCTGAAGAAAGCAGTTCAGACTACAGTTCTTTATCTGAATCAGAATCAGAAAGAAGTCGGAGTAGGAGAAAGAAGCAGAAGAGGGGAAGGAGAAAGAGGAGGTACAGCTCTTCTGAATCTTCTGATTCAGACTCAGGGTCTGAATCCGAATCTGATTATGAGGACAAACGTAGTAGGAGGAAGAGCCGAAGGCACAACAGAAGACGCTAG

Protein sequence

MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRPSRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKHLKKKSKRKHRSNARSNSDSEASVFETDSGSSSVTGSDDSSEESSSDYSSLSESESERSRSRRKKQKRGRRKRRYSSSESSDSDSGSESESDYEDKRSRRKSRRHNRRR

Homology

[Close]

BLAST of Lcy02g007560 vs. ExPASy Swiss-Prot
Match: Q9CX48 (Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc10 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 66/166 (39.76%), Postives = 87/166 (52.41%), Query Frame = 0


Query: 96  QCQKCYQVGHWTYECKNERVYISRPSRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKH 155
           +CQKC + GHWTYECK +R Y+ RPSRT +LK      +  +  +     S  E   EK 
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKKALKEKENRLLLQ-----SIGETNIEKK 81

Query: 156 LKKKSKRKH-RSNARSNSDSEASVFETDSGSSSVTGSDDSSEESSSD---YSSLSESESE 215
           +KKK + K   S++ S+SDS AS    +S S S T +  SSE+S SD    SS S S S 
Sbjct: 82  IKKKKRSKSVTSSSTSSSDSSAS----ESSSESETSASSSSEDSDSDESLSSSSSSSSSS 141

Query: 216 RSRSRRKKQKRGRRKRRYSSSESSDSDSGSESESDYEDKRSRRKSR 258
              S              SSS SS S S SES SD E ++ ++K +
Sbjct: 142 ACSSSSSSSSSSSSSDSDSSSSSSSSSSSSESSSDDEPQKKKKKKK 178

[Close]

BLAST of Lcy02g007560 vs. ExPASy Swiss-Prot
Match: Q5EB97 (Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Zcchc10 PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-06
Identity = 64/161 (39.75%), Postives = 83/161 (51.55%), Query Frame = 0


Query: 96  QCQKCYQVGHWTYECKNERVYISRPSRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKH 155
           +CQKC + GHWTYECK +R Y+ RPSRT +LK   L+ K     +    ++  E+K    
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKK-ALKEKENRLLQQSMGETNTERKT--- 81

Query: 156 LKKKSKRKHRSNARSNSDSEASVFETDSGSSSVTGSDDSSEESSSDYS-SLSESESERSR 215
             KK +R     + S+SDS AS    +S S S T +  SSE+S +D S S S S S  S 
Sbjct: 82  --KKKRRPKSVTSTSSSDSSAS----ESSSESETSASSSSEDSDADGSLSSSSSSSAYSS 141

Query: 216 SRRKKQKRGRRKRRYSSSESSDSDSGSESESDYEDKRSRRK 256
           S               SS SS S S SES SD E  + R+K
Sbjct: 142 SSSSSSSSSSSSSDSDSSSSSSSSSSSESSSDDEPPKKRKK 172

[Close]

BLAST of Lcy02g007560 vs. ExPASy Swiss-Prot
Match: Q8TBK6 (Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.8e-05
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 0


Query: 96  QCQKCYQVGHWTYECKNERVYISRPSRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKH 155
           +CQKC + GHWTYEC  +R Y+ RPSRT +LK      +  +  +    ++  E+KA   
Sbjct: 44  RCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKA--- 103

Query: 156 LKKKSKRKHRSNARSNSDSEASVFETDSGSSSVTGSDDSSEESSSDYSSLSESESERSRS 215
            KKK  +   S++ S+SDS AS     S  S  T +  SSE+S +D SS S S S  S +
Sbjct: 104 -KKKRSKSVTSSSSSSSDSSAS---DSSSESEETSTSSSSEDSDTDESSSSSSSSASSTT 163

Query: 216 RRKKQKRGRRKRRYSSSESSDSDSGSESESDYEDKRSRRK 256
                          SS SS S + ++S SD E  + ++K
Sbjct: 164 SSSSSDSDS-----DSSSSSSSSTSTDSSSDDEPPKKKKK 191

[Close]

BLAST of Lcy02g007560 vs. ExPASy TrEMBL
Match: A0A6J1CAJ2 (zinc finger CCHC domain-containing protein 10 OS=Momordica charantia OX=3673 GN=LOC111009881 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 6.2e-106
Identity = 243/265 (91.70%), Postives = 251/265 (94.72%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDLKASMSS GGAAAQCQKCYQVGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSAGGAAAQCQKCYQVGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKHLKKKSKRKHRSNARSNSDSEASVFE 180
           SRTQQLKNPKLRMKM+ SYELDNPDSGKEKK  +   KKSKRKHRSNA+S SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMSESYELDNPDSGKEKKKTEKHSKKSKRKHRSNAKSGSDSEASVFE 180

Query: 181 TDSGSSSVTGSDDSSEESSSDYSSLSESESE-RSRSRRKKQKRGRRKRRY-SSSESSDSD 240
           TDSGSSSVTGSDDSSE SSSDYSS SESESE RSR RRKKQK+GRRKRRY SSSESSDSD
Sbjct: 181 TDSGSSSVTGSDDSSEGSSSDYSSSSESESERRSRRRRKKQKKGRRKRRYSSSSESSDSD 240

Query: 241 SGSESESDYEDKRSRRKSRRHNRRR 264
           SGSESESD +D+RS+RKSRRH+RRR
Sbjct: 241 SGSESESDSDDERSKRKSRRHSRRR 265

[Close]

BLAST of Lcy02g007560 vs. ExPASy TrEMBL
Match: A0A0A0LJ33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 8.1e-106
Identity = 239/264 (90.53%), Postives = 250/264 (94.70%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMS  GGAAAQCQKCYQ+GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKHLKKKSKRKHRSNARSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VS ELDNPD G+EKK +KH KKKSKRKHRSNA+SNSDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEKKPKKHSKKKSKRKHRSNAKSNSDSEASVFE 180

Query: 181 TDSGSSSVTGSDDSSEESSSDYSSLSESESERSRSRRKKQKRGRRKRRY-SSSESSDSDS 240
           TDSGSSSVT SDDSSEESSSDYSS SESESERSR RRKKQKRGRRKRRY SSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDYEDKRSRRKSRRHNRRR 264
            SESESD +++RSRRKSRRH+R+R
Sbjct: 241 RSESESDSDNERSRRKSRRHSRKR 264

[Close]

BLAST of Lcy02g007560 vs. ExPASy TrEMBL
Match: A0A1S3CDQ2 (zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC103499707 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 2.0e-104
Identity = 237/264 (89.77%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMSS GGAAAQCQKCYQ+GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKHLKKKSKRKHRSNARSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VS ELDNPD G+E+K +KH K KSKRKHRSNA+S+SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSVTGSDDSSEESSSDYSSLSESESERSRSRRKKQKRGRRKRRY-SSSESSDSDS 240
           TDSGSSSVT SDDSSEESSSDYSS SESE ERSR RRKKQKRGRRKRRY SSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDYEDKRSRRKSRRHNRRR 264
            SESESD +++RSRRKSRRH+RRR
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Lcy02g007560 vs. ExPASy TrEMBL
Match: A0A5A7TW64 (Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001260 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 2.0e-104
Identity = 237/264 (89.77%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMSS GGAAAQCQKCYQ+GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKHLKKKSKRKHRSNARSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VS ELDNPD G+E+K +KH K KSKRKHRSNA+S+SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSVTGSDDSSEESSSDYSSLSESESERSRSRRKKQKRGRRKRRY-SSSESSDSDS 240
           TDSGSSSVT SDDSSEESSSDYSS SESE ERSR RRKKQKRGRRKRRY SSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDYEDKRSRRKSRRHNRRR 264
            SESESD +++RSRRKSRRH+RRR
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Lcy02g007560 vs. ExPASy TrEMBL
Match: A0A6J1H6H5 (zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111460472 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 3.2e-102
Identity = 238/268 (88.81%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMSS GGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKK--AEKHLKKKSKRKHRSNARSNSDSEASV 180
           SRTQQLKNPKLRMKM VS ELDNPDSG E+K   +K LKKKSKRKHRS  +SNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSLSESESERS--RSRRKKQKRGRRKRRY-SSSESS 240
           FETDSGSSSVTGSDDSSEESSSDYSS S+SESERS  R RRKKQKRGRRKRRY SSS+SS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDYEDKRSRRKSRRHNRRR 264
           DSDSGSESESD + +RSRRKSRRH+R+R
Sbjct: 241 DSDSGSESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Lcy02g007560 vs. NCBI nr
Match: XP_022138805.1 (zinc finger CCHC domain-containing protein 10 [Momordica charantia])

HSP 1 Score: 393.7 bits (1010), Expect = 1.3e-105
Identity = 243/265 (91.70%), Postives = 251/265 (94.72%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDLKASMSS GGAAAQCQKCYQVGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSAGGAAAQCQKCYQVGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKHLKKKSKRKHRSNARSNSDSEASVFE 180
           SRTQQLKNPKLRMKM+ SYELDNPDSGKEKK  +   KKSKRKHRSNA+S SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMSESYELDNPDSGKEKKKTEKHSKKSKRKHRSNAKSGSDSEASVFE 180

Query: 181 TDSGSSSVTGSDDSSEESSSDYSSLSESESE-RSRSRRKKQKRGRRKRRY-SSSESSDSD 240
           TDSGSSSVTGSDDSSE SSSDYSS SESESE RSR RRKKQK+GRRKRRY SSSESSDSD
Sbjct: 181 TDSGSSSVTGSDDSSEGSSSDYSSSSESESERRSRRRRKKQKKGRRKRRYSSSSESSDSD 240

Query: 241 SGSESESDYEDKRSRRKSRRHNRRR 264
           SGSESESD +D+RS+RKSRRH+RRR
Sbjct: 241 SGSESESDSDDERSKRKSRRHSRRR 265

[Close]

BLAST of Lcy02g007560 vs. NCBI nr
Match: XP_011649249.1 (zinc finger CCHC domain-containing protein 10 [Cucumis sativus] >KGN61833.1 hypothetical protein Csa_006617 [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 1.7e-105
Identity = 239/264 (90.53%), Postives = 250/264 (94.70%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMS  GGAAAQCQKCYQ+GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKHLKKKSKRKHRSNARSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VS ELDNPD G+EKK +KH KKKSKRKHRSNA+SNSDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEKKPKKHSKKKSKRKHRSNAKSNSDSEASVFE 180

Query: 181 TDSGSSSVTGSDDSSEESSSDYSSLSESESERSRSRRKKQKRGRRKRRY-SSSESSDSDS 240
           TDSGSSSVT SDDSSEESSSDYSS SESESERSR RRKKQKRGRRKRRY SSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDYEDKRSRRKSRRHNRRR 264
            SESESD +++RSRRKSRRH+R+R
Sbjct: 241 RSESESDSDNERSRRKSRRHSRKR 264

[Close]

BLAST of Lcy02g007560 vs. NCBI nr
Match: XP_008460988.2 (PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >XP_008460989.1 PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >KAA0045615.1 zinc finger CCHC domain-containing protein 10 [Cucumis melo var. makuwa])

HSP 1 Score: 388.7 bits (997), Expect = 4.1e-104
Identity = 237/264 (89.77%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMSS GGAAAQCQKCYQ+GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKKAEKHLKKKSKRKHRSNARSNSDSEASVFE 180
           SRTQQLKNPKLRMKM VS ELDNPD G+E+K +KH K KSKRKHRSNA+S+SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSVTGSDDSSEESSSDYSSLSESESERSRSRRKKQKRGRRKRRY-SSSESSDSDS 240
           TDSGSSSVT SDDSSEESSSDYSS SESE ERSR RRKKQKRGRRKRRY SSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDYEDKRSRRKSRRHNRRR 264
            SESESD +++RSRRKSRRH+RRR
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Lcy02g007560 vs. NCBI nr
Match: XP_022959515.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata])

HSP 1 Score: 381.3 bits (978), Expect = 6.6e-102
Identity = 238/268 (88.81%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMSS GGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKK--AEKHLKKKSKRKHRSNARSNSDSEASV 180
           SRTQQLKNPKLRMKM VS ELDNPDSG E+K   +K LKKKSKRKHRS  +SNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSLSESESERS--RSRRKKQKRGRRKRRY-SSSESS 240
           FETDSGSSSVTGSDDSSEESSSDYSS S+SESERS  R RRKKQKRGRRKRRY SSS+SS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDYEDKRSRRKSRRHNRRR 264
           DSDSGSESESD + +RSRRKSRRH+R+R
Sbjct: 241 DSDSGSESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Lcy02g007560 vs. NCBI nr
Match: KAG7013679.1 (Zinc finger CCHC domain-containing protein 10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 378.3 bits (970), Expect = 5.6e-101
Identity = 237/268 (88.43%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTGGAAAQCQKCYQVGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMSS GGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMTVSYELDNPDSGKEKK--AEKHLKKKSKRKHRSNARSNSDSEASV 180
           SRTQQLKNPKLRMKM VS ELDNPDSG E+K   +K LKKKSKRKHRS  +SNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSLSESESERS--RSRRKKQKRGRRKRRY-SSSESS 240
           FETDSGSSSVTGSDDSSEESSSDYSS S+SESERS  R RRKKQKRGRRKRRY SSS+SS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDYEDKRSRRKSRRHNRRR 264
           DSDS SESESD + +RSRRKSRRH+R+R
Sbjct: 241 DSDSESESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Lcy02g007560 vs. TAIR 10
Match: AT5G49400.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 261.5 bits (667), Expect = 7.1e-70
Identity = 182/282 (64.54%), Postives = 212/282 (75.18%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MS+ K+EKSQ AA+RIKAA L+AAKGLSR QAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSTG---GAAAQCQKCYQVGHWTYECKNERVYI 120
           E KRQMYLMSTEKAVRLGERKD   S S+ G    AA+QCQKC+Q GHWTYECKNERVYI
Sbjct: 61  ELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYI 120

Query: 121 SRPSRTQQLKNPKLRMKMTV--------SYELDNPDSGKEKKAEKHLKKKSKRKHRSNAR 180
           SRPSRTQQLKNPKLR K +V          E + PD+   K   +   KKSKRKHRS + 
Sbjct: 121 SRPSRTQQLKNPKLRTKPSVDDLDGSDDDDEEERPDATNGKAEVEKRSKKSKRKHRSKSD 180

Query: 181 SNSDSEASVFETDSGSSSVTGSDDSSEESSSDYSSLSESESERSR------SRRKKQKRG 240
           S SDSEASVFETD        SD SS ESSS+YSS S+SE ER R      S++K+++R 
Sbjct: 181 SESDSEASVFETD--------SDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRK 240

Query: 241 RRKRRY--SSSESSDSDSGSESESDYEDKRSRRKSRRHNRRR 264
            R+RRY  SSSESS+S+S S+S+SD +  R ++KS+RH+ +R
Sbjct: 241 ERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKR 274

The following BLAST results are available for this feature:

BLAST of Lcy02g007560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CX48	1.1e-06	39.76	Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc1...	[more]
Q5EB97	3.2e-06	39.75	Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Z...	[more]
Q8TBK6	7.8e-05	35.63	Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10...	[more]

BLAST of Lcy02g007560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAJ2	6.2e-106	91.70	zinc finger CCHC domain-containing protein 10 OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LJ33	8.1e-106	90.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1	[more]
A0A1S3CDQ2	2.0e-104	89.77	zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5A7TW64	2.0e-104	89.77	Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1H6H5	3.2e-102	88.81	zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of Lcy02g007560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138805.1	1.3e-105	91.70	zinc finger CCHC domain-containing protein 10 [Momordica charantia]	[more]
XP_011649249.1	1.7e-105	90.53	zinc finger CCHC domain-containing protein 10 [Cucumis sativus] >KGN61833.1 hypo...	[more]
XP_008460988.2	4.1e-104	89.77	PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >XP_0084...	[more]
XP_022959515.1	6.6e-102	88.81	zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata]	[more]
KAG7013679.1	5.6e-101	88.43	Zinc finger CCHC domain-containing protein 10 [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of Lcy02g007560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49400.1	7.1e-70	64.54	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13917	zf-CCHC_3	coord: 92..129 e-value: 6.0E-20 score: 70.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..263
IPR039715	Zinc finger CCHC domain-containing protein 10	PANTHER	PTHR13491	ZCCHC10 PROTEIN	coord: 1..253
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 88..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g007560.1	Lcy02g007560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding