Lcy02g006900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g006900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	agamous-like MADS-box protein AGL14
Location	Chr02: 9260014 .. 9262111 (-)
RNA-Seq Expression	Lcy02g006900
Synteny	Lcy02g006900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGCTTATGAGCTCTCAACGCTTTGCGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGAGCCAAATGAAGATCGATCACGTTCGCAATCGGAACGGGAGATTCACACTTGGCCTCCGAATCACAGCAAGATCCAAGGTATAGTTCGTGCCTACAAAAACAACTATTTTCGGAAGCATAAGTGTTTCGATTTATATGATTTTTTTCGGACCGGAAGAGGAAAGTTGAAACTGAGATGTGTAAGCTTCGTGACAATGTCGATGAAATTGTTTGCCCTAATTCAGACAAGTGGCTTGAGTCTTTGTCGGAATTTAAATTGAGAGAGTTCATGGATGGATTGGATTCGAGGCGCATGAAGGAGAGTGAAGGAGATGAGAAACGAAGGGTTGCCGGCGAGAAGAAAAAACTAAGGGGAGGGGTTCTGTTTTGCGCCGGCGATGGGAGGATTTCTTCCTCCCTCTCACTCTTTTATTAAAAAAAAAAAAAGAAAGGTAGAAAAAGGGAAAGAAAAGAAGAAAGAAAAGAAAAGAAAGGAAAAAAAAAAGTTTGATGAAGAAGAGAAAGAAGAGTCTGATGAAGAAGACTTATGAACTCTCGACGCTTTGCGACGTTCAGACATGCGTTCTCATCCACGACCCTTCTTCGGCGCCAAATGAAGATCGATCACGTTCGCAATCGGAACGGGAGATTCACACTTGACCTCTGAATCACAGCAAGATCCAAGATATGATTCGTGCCTACAAAAACAACTATTTTCGGAAGCATAAGTGTTTCAATTTATATGATTTTTTTCAGACCGGAAGAGGAAAGTTGAAACTGAGATGTGTAAGCTTCGTGACAATGTCGACGAAATTGTTTGCCCTAATTCAGACAAGTGGCTTGAGTCTTTGTCGGAATTTCAATTGAGAGAGTTCATGGATGGATTGGATTCGCGGCGCATGAAGGAGAGTGGAGGAGATGAGAAACGAAGGGTTGCCGGCGAGAAGAAAAAACTAAGGGGAGGGGTTCTGTTTTGCGCCGGCAATGGGAGGATTTCTTCCTCCCTCTCACTCTTTTATTAAAAAAAAAAAAAAAGAAAGGTAGAGAAAGGGAAAGAAAAGAAGAAAGAAAAGAAAAGAAAGGAAAAAAAAAGTTTGATGAAGAAGAGAAAGAAGAGTCTGATTAAGAAGACTTATGAACTCTCGACGCTTTGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGTTCCAAATGAAGATCAATCGCGTTCACAATCGGAACAGAAGATTCACACTTGGCCTCCGAATCGCAGCAAGATCGAAGGTATGATTCGTGCCTACAAAAACAAATATTTTCGGAAGCAGAGGTGCTTCGATTTATATGATTTTTTCTCGGACCGAAAGAGAAAAGTTGAAACGGACATGTGTAAACTTCGTGAGAATGTCGACGAAATTGTTTGCCCTAATTTGGACAAGTGGCTTGAGTCTTTGTCGGAATGTCAATTGAGAGAGTTCATGGATGGATTGGATTCGCGGCGCATGAAGGAGAGTGAGGGAGATGAGAAACGAAGGGTTGCCGGCGAGAAGAAAAAACTAAGGGGAGGGGTTCTGTTTTGCGCCGGCGATGGGAGGATTTCTTCCTCCCTCTTACTCTTTTTTATTAAAAAAAAAAAAAAAAGAAAGGTAGAGAAAGGGAAAGAAAAGAAGAAAGAAAAGAAAAGAAAGGTAAAAAAAGTTTGATGAAGAAGAGAAAGACGAGTCTGATGAAGAAGACTTATGAACTCTCGACGCTTTGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGTGCGAAACGAAGATCGATTGCGTTCACAATCGGAACAGGAGATTCACACTTGGCCTCCGAATCGCATCAAGATCGAAGGTATGATTCGTGCCTACAAAAACAAATATTTCCGGAAGAAGAGGTGCTTCGATTTATATGATTTTTTCTCGGACGAAAAGAGAAAAGTTGAAACAGAGATGTGTAAGCTTCGTGAGAATGTCGACGAACTTGTTTGTCCTAATTCAGACAAGTGGGTTGAGTCTGATGAAGAAAGTTTATGA

mRNA sequence

ATGAAGAAGGCTTATGAGCTCTCAACGCTTTGCGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGAGCCAAATGAAGATCGATCACGTTCGCAATCGGAACGGGAGATTCACACTTGGCCTCCGAATCACAGCAAGATCCAAGAGGAAAGTTGAAACTGAGATGTGTAAGCTTCGTGACAATGTCGATGAAATTGTTTGCCCTAATTCAGACAAGTGGCTTGAGTCTTTGTCGGAATTTAAATTGAGAGAGTTCATGGATGGATTGGATTCGAGGCGCATGAAGGAGAGTGAAGGAGATGAGAAACGAAGGACATGCGTTCTCATCCACGACCCTTCTTCGGCGCCAAATGAAGATCGATCACACCGGAAGAGGAAAGTTGAAACTGAGATGTGTAAGCTTCGTGACAATGTCGACGAAATTGTTTGCCCTAATTCAGACAAGTGGCTTGAGTCTTTGTCGGAATTTCAATTGAGAGAGTTCATGGATGGATTGGATTCGCGGCGCATGAAGGAGAGTGGAGGAGATGAGAAACGAAGGAGTCTGATTAAGAAGACTTATGAACTCTCGACGCTTTGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGTTCCAAATGAAGATCAATCGCGTTCACAATCGGAACAGAAGATTCACACTTGGCCTCCGAATCGCAGCAAGATCGAAGGTATGATTCGTGCCTACAAAAACAAATATTTTCGGAAGCAGAGGTGCTTCGATTTATATGATTTTTTCTCGGACCGAAAGAGAAAAGTTGAAACGGACATGTGTAAACTTCGTGAGAATGTCGACGAAATTGTTTGCCCTAATTTGGACAAGTGGCTTGAGTCTTTGTCGGAATGTCAATTGAGAGAGTTCATGGATGGATTGGATTCGCGGCGCATGAAGGAGAGTGAGGGAGATGAGAAACGAAGGGTTGCCGGCGAGAAGAAAAAACTAAGGGGAGGGAAGACTTATGAACTCTCGACGCTTTGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGTGCGAAACGAAGATCGATTGCGTTCACAATCGGAACAGGAGATTCACACTTGGCCTCCGAATCGCATCAAGATCGAAGGTATGATTCGTGCCTACAAAAACAAATATTTCCGGAAGAAGAGGTGCTTCGATTTATATGATTTTTTCTCGGACGAAAAGAGAAAAGTTGAAACAGAGATGTGTAAGCTTCGTGAGAATGTCGACGAACTTGTTTGTCCTAATTCAGACAAGTGGGTTGAGTCTGATGAAGAAAGTTTATGA

Coding sequence (CDS)

ATGAAGAAGGCTTATGAGCTCTCAACGCTTTGCGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGAGCCAAATGAAGATCGATCACGTTCGCAATCGGAACGGGAGATTCACACTTGGCCTCCGAATCACAGCAAGATCCAAGAGGAAAGTTGAAACTGAGATGTGTAAGCTTCGTGACAATGTCGATGAAATTGTTTGCCCTAATTCAGACAAGTGGCTTGAGTCTTTGTCGGAATTTAAATTGAGAGAGTTCATGGATGGATTGGATTCGAGGCGCATGAAGGAGAGTGAAGGAGATGAGAAACGAAGGACATGCGTTCTCATCCACGACCCTTCTTCGGCGCCAAATGAAGATCGATCACACCGGAAGAGGAAAGTTGAAACTGAGATGTGTAAGCTTCGTGACAATGTCGACGAAATTGTTTGCCCTAATTCAGACAAGTGGCTTGAGTCTTTGTCGGAATTTCAATTGAGAGAGTTCATGGATGGATTGGATTCGCGGCGCATGAAGGAGAGTGGAGGAGATGAGAAACGAAGGAGTCTGATTAAGAAGACTTATGAACTCTCGACGCTTTGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGTTCCAAATGAAGATCAATCGCGTTCACAATCGGAACAGAAGATTCACACTTGGCCTCCGAATCGCAGCAAGATCGAAGGTATGATTCGTGCCTACAAAAACAAATATTTTCGGAAGCAGAGGTGCTTCGATTTATATGATTTTTTCTCGGACCGAAAGAGAAAAGTTGAAACGGACATGTGTAAACTTCGTGAGAATGTCGACGAAATTGTTTGCCCTAATTTGGACAAGTGGCTTGAGTCTTTGTCGGAATGTCAATTGAGAGAGTTCATGGATGGATTGGATTCGCGGCGCATGAAGGAGAGTGAGGGAGATGAGAAACGAAGGGTTGCCGGCGAGAAGAAAAAACTAAGGGGAGGGAAGACTTATGAACTCTCGACGCTTTGCGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTCGGTGCGAAACGAAGATCGATTGCGTTCACAATCGGAACAGGAGATTCACACTTGGCCTCCGAATCGCATCAAGATCGAAGGTATGATTCGTGCCTACAAAAACAAATATTTCCGGAAGAAGAGGTGCTTCGATTTATATGATTTTTTCTCGGACGAAAAGAGAAAAGTTGAAACAGAGATGTGTAAGCTTCGTGAGAATGTCGACGAACTTGTTTGTCCTAATTCAGACAAGTGGGTTGAGTCTGATGAAGAAAGTTTATGA

Protein sequence

MKKAYELSTLCATFGHAFSSTTLLRSQMKIDHVRNRNGRFTLGLRITARSKRKVETEMCKLRDNVDEIVCPNSDKWLESLSEFKLREFMDGLDSRRMKESEGDEKRRTCVLIHDPSSAPNEDRSHRKRKVETEMCKLRDNVDEIVCPNSDKWLESLSEFQLREFMDGLDSRRMKESGGDEKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPPNRSKIEGMIRAYKNKYFRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKWLESLSECQLREFMDGLDSRRMKESEGDEKRRVAGEKKKLRGGKTYELSTLCDVRTCVLIHDPSSVRNEDRLRSQSEQEIHTWPPNRIKIEGMIRAYKNKYFRKKRCFDLYDFFSDEKRKVETEMCKLRENVDELVCPNSDKWVESDEESL

Homology

[Close]

BLAST of Lcy02g006900 vs. ExPASy TrEMBL
Match: A0A6J1F4C8 (agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC111442271 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.1e-33
Identity = 81/139 (58.27%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 170 SRRMKESGGDEKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPP 229
           +R+ + S   +++ SL+KK YELSTLCDVRTCVLI+ P   P+ED S S  E   HTWP 
Sbjct: 13  NRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSLSSVE--FHTWPS 72

Query: 230 NRSKIEGMIRAYKNK--YFRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKW 289
           NRS++E MI AYKN    F+K++CFDL D+FSDRKRK+ T+MCK RE V +I+ P+ D+ 
Sbjct: 73  NRSEVEHMIHAYKNGNCNFQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDER 132

Query: 290 LESLSECQLREFMDGLDSR 307
           L+ LSE QLREFM+GLDSR
Sbjct: 133 LDCLSEQQLREFMNGLDSR 149

[Close]

BLAST of Lcy02g006900 vs. ExPASy TrEMBL
Match: A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-32
Identity = 80/139 (57.55%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 170 SRRMKESGGDEKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPP 229
           +R+ + S   +++ SL+KK YELSTLCDVRTCVLI+ P   P+ED S S  E   HTWP 
Sbjct: 13  NRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSLSSVE--FHTWPS 72

Query: 230 NRSKIEGMIRAYKNK--YFRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKW 289
           NRS++E MI AYKN     +K++CFDL D+FSDRKRK+ T+MCK RE V +I+ P+ D+ 
Sbjct: 73  NRSEVEHMIHAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDER 132

Query: 290 LESLSECQLREFMDGLDSR 307
           L+ LSE QLREFM+GLDSR
Sbjct: 133 LDCLSEQQLREFMNGLDSR 149

[Close]

BLAST of Lcy02g006900 vs. ExPASy TrEMBL
Match: A0A6J1CQB5 (uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.8e-24
Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 186 IKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPPNRSKIEGMIRAYKNKY 245
           +KK +ELSTLCDVRTCVLIH P+   + D S  +S    HTWP NR +IEG+IRAYK  Y
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVES----HTWPLNREEIEGIIRAYKTSY 60

Query: 246 FRK--QRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKWLESLSECQLREFMDGL 305
           F+K   + FDLY +FSDR +K+E +  K R + ++I CP+ D+ LE LS  QLR  M+ L
Sbjct: 61  FQKPLMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDL 119

Query: 306 DSR 307
            S+
Sbjct: 121 GSK 119

[Close]

BLAST of Lcy02g006900 vs. ExPASy TrEMBL
Match: A0A6J1CQB2 (uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.8e-24
Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 186 IKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPPNRSKIEGMIRAYKNKY 245
           +KK +ELSTLCDVRTCVLIH P+   + D S  +S    HTWP NR +IEG+IRAYK  Y
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVES----HTWPLNREEIEGIIRAYKTSY 60

Query: 246 FRK--QRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKWLESLSECQLREFMDGL 305
           F+K   + FDLY +FSDR +K+E +  K R + ++I CP+ D+ LE LS  QLR  M+ L
Sbjct: 61  FQKPLMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDL 119

Query: 306 DSR 307
            S+
Sbjct: 121 GSK 119

[Close]

BLAST of Lcy02g006900 vs. ExPASy TrEMBL
Match: A0A6J1CNU9 (uncharacterized protein LOC111013182 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.8e-24
Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 186 IKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPPNRSKIEGMIRAYKNKY 245
           +KK +ELSTLCDVRTCVLIH P+   + D S  +S    HTWP NR +IEG+IRAYK  Y
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVES----HTWPLNREEIEGIIRAYKTSY 60

Query: 246 FRK--QRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKWLESLSECQLREFMDGL 305
           F+K   + FDLY +FSDR +K+E +  K R + ++I CP+ D+ LE LS  QLR  M+ L
Sbjct: 61  FQKPLMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDL 119

Query: 306 DSR 307
            S+
Sbjct: 121 GSK 119

[Close]

BLAST of Lcy02g006900 vs. NCBI nr
Match: XP_022935361.1 (agamous-like MADS-box protein AGL14 [Cucurbita moschata])

HSP 1 Score: 152.9 bits (385), Expect = 6.3e-33
Identity = 81/139 (58.27%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 170 SRRMKESGGDEKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPP 229
           +R+ + S   +++ SL+KK YELSTLCDVRTCVLI+ P   P+ED S S  E   HTWP 
Sbjct: 13  NRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSLSSVE--FHTWPS 72

Query: 230 NRSKIEGMIRAYKNK--YFRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKW 289
           NRS++E MI AYKN    F+K++CFDL D+FSDRKRK+ T+MCK RE V +I+ P+ D+ 
Sbjct: 73  NRSEVEHMIHAYKNGNCNFQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDER 132

Query: 290 LESLSECQLREFMDGLDSR 307
           L+ LSE QLREFM+GLDSR
Sbjct: 133 LDCLSEQQLREFMNGLDSR 149

[Close]

BLAST of Lcy02g006900 vs. NCBI nr
Match: XP_038887053.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-32
Identity = 75/142 (52.82%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 168 LDSRRMKESGGDEKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTW 227
           + +R+ + S   +++ SL+KK YELSTLCDV+TCVL+H P+S+P ED   SQS+ + HTW
Sbjct: 11  IPNRKSRISTFKKRKNSLMKKAYELSTLCDVQTCVLVHGPASLPTEDP--SQSDPEFHTW 70

Query: 228 PPNRSKIEGMIRAYKNK---YFRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNL 287
           P +R+ +E MIRAYK      F+K +CF L D+FSDRKRK+E++ CKLRE   + +CP  
Sbjct: 71  PSDRTHLEAMIRAYKTTRSCNFQKCKCFGLTDYFSDRKRKIESETCKLRE---KFMCPKW 130

Query: 288 DKWLESLSECQLREFMDGLDSR 307
           D+WL+ LSE +LREFM+GLD++
Sbjct: 131 DEWLDRLSEHELREFMEGLDAK 147

[Close]

BLAST of Lcy02g006900 vs. NCBI nr
Match: XP_038887059.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 2.4e-32
Identity = 75/142 (52.82%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 168 LDSRRMKESGGDEKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTW 227
           + +R+ + S   +++ SL+KK YELSTLCDV+TCVL+H P+S+P ED   SQS+ + HTW
Sbjct: 11  IPNRKSRISTFKKRKNSLMKKAYELSTLCDVQTCVLVHGPASLPTEDP--SQSDLEFHTW 70

Query: 228 PPNRSKIEGMIRAYKNK---YFRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNL 287
           P +R+ +E MIRAYK      F+K +CF L D+FSDRKRK+E++ CKLRE   + +CP  
Sbjct: 71  PSDRTHLEAMIRAYKTTRSCNFQKCKCFGLTDYFSDRKRKIESETCKLRE---KFMCPKW 130

Query: 288 DKWLESLSECQLREFMDGLDSR 307
           D+WL+ LSE +LREFM+GLD++
Sbjct: 131 DEWLDRLSEHELREFMEGLDAK 147

[Close]

BLAST of Lcy02g006900 vs. NCBI nr
Match: XP_023528957.1 (agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 3.1e-32
Identity = 80/139 (57.55%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 170 SRRMKESGGDEKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPP 229
           +R+ + S   +++ SL+KK YELSTLCDVRTCVLI+ P   P+ED S S  E   HTWP 
Sbjct: 13  NRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSLSSVE--FHTWPS 72

Query: 230 NRSKIEGMIRAYKNK--YFRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKW 289
           NRS++E MI AYKN     +K++CFDL D+FSDRKRK+ T+MCK RE V +I+ P+ D+ 
Sbjct: 73  NRSEVEHMIHAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDER 132

Query: 290 LESLSECQLREFMDGLDSR 307
           L+ LSE QLREFM+GLDSR
Sbjct: 133 LDCLSEQQLREFMNGLDSR 149

[Close]

BLAST of Lcy02g006900 vs. NCBI nr
Match: XP_022983430.1 (agamous-like MADS-box protein AGL14 [Cucurbita maxima])

HSP 1 Score: 150.6 bits (379), Expect = 3.1e-32
Identity = 80/139 (57.55%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 170 SRRMKESGGDEKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPP 229
           +R+ + S   +++ SL+KK YELSTLCDVRTCVLI+ P   P+ED S S  E   HTWP 
Sbjct: 13  NRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSLSSVE--FHTWPS 72

Query: 230 NRSKIEGMIRAYKNK--YFRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKW 289
           NRS++E MI AYKN     +K++CFDL D+FSDRKRK+ T+MCK RE V +I+ P+ D+ 
Sbjct: 73  NRSEVEHMIHAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDER 132

Query: 290 LESLSECQLREFMDGLDSR 307
           L+ LSE QLREFM+GLDSR
Sbjct: 133 LDCLSEQQLREFMNGLDSR 149

[Close]

BLAST of Lcy02g006900 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 46.2 bits (108), Expect = 7.8e-05
Identity = 37/127 (29.13%), Postives = 59/127 (46.46%), Query Frame = 0


Query: 180 EKRRSLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPPNRSKIEGMIR 239
           +++ SL KK  E STLC V TC++++ P+     D   S+ E     WP + +K+  +IR
Sbjct: 23  KRKASLYKKAQEFSTLCGVETCLIVYGPTKA--TDVVISEPE----IWPKDETKVRAIIR 82

Query: 240 AYKNKY---FRKQRCFDLYDFFSDRKRKVETDMCKLRENVDEIVCPNLDKWLESLSECQL 299
            YK+      RK+   + +     +  +V T     REN           W E L +C  
Sbjct: 83  KYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKREN-------KYSSWEEKLDKCS- 135

Query: 300 REFMDGL 304
           RE + G+
Sbjct: 143 REQLHGI 135

[Close]

BLAST of Lcy02g006900 vs. TAIR 10
Match: AT5G26880.1 (AGAMOUS-like 26 )

HSP 1 Score: 43.1 bits (100), Expect = 6.6e-04
Identity = 21/67 (31.34%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 184 SLIKKTYELSTLCDVRTCVLIHDPSSVPNEDQSRSQSEQKIHTWPPNRSKIEGMIRAYKN 243
           ++ KK  ELSTLCD+  CV+++            S+  + I TWP ++SK+  M   +  
Sbjct: 247 TMFKKALELSTLCDIEVCVILY------------SRDGELIKTWPEDQSKVRDMAERFSK 301

Query: 244 KYFRKQR 251
            + R++R
Sbjct: 307 LHERERR 301

The following BLAST results are available for this feature:

BLAST of Lcy02g006900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g006900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4C8	3.1e-33	58.27	agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC11144227...	[more]
A0A6J1J5U6	1.5e-32	57.55	agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ...	[more]
A0A6J1CQB5	5.8e-24	52.03	uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQB2	5.8e-24	52.03	uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CNU9	5.8e-24	52.03	uncharacterized protein LOC111013182 isoform X4 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lcy02g006900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935361.1	6.3e-33	58.27	agamous-like MADS-box protein AGL14 [Cucurbita moschata]	[more]
XP_038887053.1	1.8e-32	52.82	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]
XP_038887059.1	2.4e-32	52.82	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]
XP_023528957.1	3.1e-32	57.55	agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo]	[more]
XP_022983430.1	3.1e-32	57.55	agamous-like MADS-box protein AGL14 [Cucurbita maxima]	[more]

BLAST of Lcy02g006900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58890.1	7.8e-05	29.13	AGAMOUS-like 82	[more]
AT5G26880.1	6.6e-04	31.34	AGAMOUS-like 26	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 180..263 e-value: 6.4E-8 score: 34.6
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 180..239
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 182..208 e-value: 3.2E-6 score: 26.6
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 165..218 score: 9.012112
None	No IPR available	PANTHER	PTHR48019:SF34	SUBFAMILY NOT NAMED	coord: 316..418
None	No IPR available	PANTHER	PTHR48019:SF34	SUBFAMILY NOT NAMED	coord: 180..306
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 180..306
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 316..418

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g006900.1	Lcy02g006900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
molecular_function	GO:0000987	cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding