Lcy02g006890 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g006890
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	agamous-like MADS-box protein AGL14
Location	Chr02: 9257655 .. 9258011 (-)
RNA-Seq Expression	Lcy02g006890
Synteny	Lcy02g006890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAGGAAGAAGAGTCTGATGAAGAAGGCTTATGAACTCTCAACGCTTTGTGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTTGGCTCCAAATGAAGATCGATCGCATTCGCAATCGGAACAGGAGATTCACACTTGGACTCCGAATCGCAGTAAGATCGAAGGTATGATTCGTGCCTACAAAAACAACTATTTCCGGAAGCAGAGGTGTTTCGATTTATATGATTTTTTCTTAGATTGGAAGAGAAAATTTGAAACGGAGATGTTTAAACTTCGTGAGAATGTCGACGAAATTGTTCGCCCTAATTCGGACAAGTGGCTTGAGTTTGATGAAGAAGGCTTATGA

mRNA sequence

ATGAAGAAGAGGAAGAAGAGTCTGATGAAGAAGGCTTATGAACTCTCAACGCTTTGTGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTTGGCTCCAAATGAAGATCGATCGCATTCGCAATCGGAACAGGAGATTCACACTTGGACTCCGAATCGCAGTAAGATCGAAGGTATGATTCGTGCCTACAAAAACAACTATTTCCGGAAGCAGAGGTGTTTCGATTTATATGATTTTTTCTTAGATTGGAAGAGAAAATTTGAAACGGAGATGTTTAAACTTCGTGAGAATGTCGACGAAATTGTTCGCCCTAATTCGGACAAGTGGCTTGAGTTTGATGAAGAAGGCTTATGA

Coding sequence (CDS)

ATGAAGAAGAGGAAGAAGAGTCTGATGAAGAAGGCTTATGAACTCTCAACGCTTTGTGACGTTCGGACATGCGTTCTCATCCACGACCCTTCTTTGGCTCCAAATGAAGATCGATCGCATTCGCAATCGGAACAGGAGATTCACACTTGGACTCCGAATCGCAGTAAGATCGAAGGTATGATTCGTGCCTACAAAAACAACTATTTCCGGAAGCAGAGGTGTTTCGATTTATATGATTTTTTCTTAGATTGGAAGAGAAAATTTGAAACGGAGATGTTTAAACTTCGTGAGAATGTCGACGAAATTGTTCGCCCTAATTCGGACAAGTGGCTTGAGTTTGATGAAGAAGGCTTATGA

Protein sequence

MKKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMIRAYKNNYFRKQRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLEFDEEGL

Homology

[Close]

BLAST of Lcy02g006890 vs. ExPASy Swiss-Prot
Match: Q9FIX0 (Agamous-like MADS-box protein AGL81 OS=Arabidopsis thaliana OX=3702 GN=AGL81 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 33/103 (32.04%), Postives = 49/103 (47.57%), Query Frame = 0


Query: 1   MKKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGM 60
           +  R +++ KKA EL TLCD+  CV+ + P             + E+ TW P R K+E +
Sbjct: 28  LSNRLETIFKKASELCTLCDIEACVIYYGP-------------DGELKTWPPEREKVEDI 87

Query: 61  IRAYK--NNYFRKQRCFDLYDFFLDWKRKFETE-MFKLRENVD 101
              Y   N   R+++   LYDF    K K   E   K+ +N D
Sbjct: 88  ALRYSQLNEALRRKKSVTLYDFLNKKKDKTNLEKKAKITDNDD 117

[Close]

BLAST of Lcy02g006890 vs. ExPASy Swiss-Prot
Match: Q9FIM0 (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 2  KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
          KKRK SL KKA E STLC V TC++++ P+ A +       SE EI  W  + +K+  +I
Sbjct: 22 KKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDV----VISEPEI--WPKDETKVRAII 80

Query: 62 RAYKN 67
          R YK+
Sbjct: 82 RKYKD 80

[Close]

BLAST of Lcy02g006890 vs. ExPASy TrEMBL
Match: A0A6J1F4C8 (agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC111442271 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.2e-25
Identity = 68/113 (60.18%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 2   KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
           K+RK SLMKKAYELSTLCDVRTCVLI+ P  AP+ED   S S  E HTW  NRS++E MI
Sbjct: 22  KQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDED--PSLSSVEFHTWPSNRSEVEHMI 81

Query: 62  RAYKNN--YFRKQRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
            AYKN    F+K++CFDL D+F D KRK  TEM K RE V +I+ P+ D+ L+
Sbjct: 82  HAYKNGNCNFQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLD 132

[Close]

BLAST of Lcy02g006890 vs. ExPASy TrEMBL
Match: A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.6e-24
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 2   KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
           K+RK SLMKKAYELSTLCDVRTCVLI+ P  AP+ED   S S  E HTW  NRS++E MI
Sbjct: 22  KQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDED--PSLSSVEFHTWPSNRSEVEHMI 81

Query: 62  RAYKNN--YFRKQRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
            AYKN     +K++CFDL D+F D KRK  TEM K RE V +I+ P+ D+ L+
Sbjct: 82  HAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLD 132

[Close]

BLAST of Lcy02g006890 vs. ExPASy TrEMBL
Match: A0A6J1CQM2 (uncharacterized protein LOC111013282 OS=Momordica charantia OX=3673 GN=LOC111013282 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19
Identity = 58/100 (58.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 2   KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
           +KR KSLMKKA+ELSTLCDVRTCVLIH P+   + DRS  +S    HTW PNR +IEG+I
Sbjct: 22  RKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSVVES----HTWPPNREEIEGII 81

Query: 62  RAYKNNYFRK--QRCFDLYDFFLDWKRKFETEMFKLRENV 100
           RAYK NY RK   + F LYDFF    +K E E  K  E +
Sbjct: 82  RAYKTNYLRKPSMKSFGLYDFFSGRMKKIEKERAKFSEEI 117

[Close]

BLAST of Lcy02g006890 vs. ExPASy TrEMBL
Match: A0A6J1CQB5 (uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.7e-18
Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 9   MKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMIRAYKNNY 68
           MKKA+ELSTLCDVRTCVLIH P  AP +D   S  E   HTW  NR +IEG+IRAYK +Y
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGP--APPQDGDCSAVES--HTWPLNREEIEGIIRAYKTSY 60

Query: 69  FRK--QRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
           F+K   + FDLY +F D  +K E E  K R + ++I  P+ D+ LE
Sbjct: 61  FQKPLMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLE 102

[Close]

BLAST of Lcy02g006890 vs. ExPASy TrEMBL
Match: A0A6J1CQB2 (uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.7e-18
Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 9   MKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMIRAYKNNY 68
           MKKA+ELSTLCDVRTCVLIH P  AP +D   S  E   HTW  NR +IEG+IRAYK +Y
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGP--APPQDGDCSAVES--HTWPLNREEIEGIIRAYKTSY 60

Query: 69  FRK--QRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
           F+K   + FDLY +F D  +K E E  K R + ++I  P+ D+ LE
Sbjct: 61  FQKPLMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLE 102

[Close]

BLAST of Lcy02g006890 vs. NCBI nr
Match: XP_022935361.1 (agamous-like MADS-box protein AGL14 [Cucurbita moschata])

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-24
Identity = 68/113 (60.18%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 2   KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
           K+RK SLMKKAYELSTLCDVRTCVLI+ P  AP+ED   S S  E HTW  NRS++E MI
Sbjct: 22  KQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDED--PSLSSVEFHTWPSNRSEVEHMI 81

Query: 62  RAYKNN--YFRKQRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
            AYKN    F+K++CFDL D+F D KRK  TEM K RE V +I+ P+ D+ L+
Sbjct: 82  HAYKNGNCNFQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLD 132

[Close]

BLAST of Lcy02g006890 vs. NCBI nr
Match: XP_023528957.1 (agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 9.4e-24
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 2   KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
           K+RK SLMKKAYELSTLCDVRTCVLI+ P  AP+ED   S S  E HTW  NRS++E MI
Sbjct: 22  KQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDED--PSLSSVEFHTWPSNRSEVEHMI 81

Query: 62  RAYKNN--YFRKQRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
            AYKN     +K++CFDL D+F D KRK  TEM K RE V +I+ P+ D+ L+
Sbjct: 82  HAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLD 132

[Close]

BLAST of Lcy02g006890 vs. NCBI nr
Match: XP_022983430.1 (agamous-like MADS-box protein AGL14 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 9.4e-24
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 2   KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
           K+RK SLMKKAYELSTLCDVRTCVLI+ P  AP+ED   S S  E HTW  NRS++E MI
Sbjct: 22  KQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDED--PSLSSVEFHTWPSNRSEVEHMI 81

Query: 62  RAYKNN--YFRKQRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
            AYKN     +K++CFDL D+F D KRK  TEM K RE V +I+ P+ D+ L+
Sbjct: 82  HAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLD 132

[Close]

BLAST of Lcy02g006890 vs. NCBI nr
Match: KAG6581223.1 (Agamous-like MADS-box protein AGL82, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 4.7e-23
Identity = 66/113 (58.41%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 2   KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
           K+RK SLMKKAYELSTLCDVRTCVLI+ P  AP+ED   S    E HTW  NRS++E MI
Sbjct: 22  KQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDED--PSLFSVEFHTWPSNRSEVEHMI 81

Query: 62  RAYKNN--YFRKQRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
            AYKN     +K++CFDL D+F D KRK  TEM K RE V +I+ P+ D+ L+
Sbjct: 82  HAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLD 132

[Close]

BLAST of Lcy02g006890 vs. NCBI nr
Match: XP_038887053.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-22
Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 2   KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
           KKRK SLMKKAYELSTLCDV+TCVL+H P+  P ED   SQS+ E HTW  +R+ +E MI
Sbjct: 22  KKRKNSLMKKAYELSTLCDVQTCVLVHGPASLPTED--PSQSDPEFHTWPSDRTHLEAMI 81

Query: 62  RAYKNN---YFRKQRCFDLYDFFLDWKRKFETEMFKLRENVDEIVRPNSDKWLE 113
           RAYK      F+K +CF L D+F D KRK E+E  KLRE   + + P  D+WL+
Sbjct: 82  RAYKTTRSCNFQKCKCFGLTDYFSDRKRKIESETCKLRE---KFMCPKWDEWLD 130

[Close]

BLAST of Lcy02g006890 vs. TAIR 10
Match: AT5G39750.1 (AGAMOUS-like 81 )

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 33/103 (32.04%), Postives = 49/103 (47.57%), Query Frame = 0


Query: 1   MKKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGM 60
           +  R +++ KKA EL TLCD+  CV+ + P             + E+ TW P R K+E +
Sbjct: 28  LSNRLETIFKKASELCTLCDIEACVIYYGP-------------DGELKTWPPEREKVEDI 87

Query: 61  IRAYK--NNYFRKQRCFDLYDFFLDWKRKFETE-MFKLRENVD 101
              Y   N   R+++   LYDF    K K   E   K+ +N D
Sbjct: 88  ALRYSQLNEALRRKKSVTLYDFLNKKKDKTNLEKKAKITDNDD 117

[Close]

BLAST of Lcy02g006890 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 2  KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
          KKRK SL KKA E STLC V TC++++ P+ A +       SE EI  W  + +K+  +I
Sbjct: 22 KKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDV----VISEPEI--WPKDETKVRAII 80

Query: 62 RAYKN 67
          R YK+
Sbjct: 82 RKYKD 80

[Close]

BLAST of Lcy02g006890 vs. TAIR 10
Match: AT5G39810.1 (AGAMOUS-like 98 )

HSP 1 Score: 48.9 bits (115), Expect = 3.2e-06
Identity = 31/101 (30.69%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 1   MKKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGM 60
           +  R +++ +KA EL TLCD+  CV+ + P             + E+ TW P R K+E +
Sbjct: 28  LSNRLETIFRKASELCTLCDIEACVIYYGP-------------DGELKTWPPEREKVEDI 87

Query: 61  IRAYK--NNYFRKQRCFDLYDFFLDWKRKFETE-MFKLREN 99
              Y   N   R+++   LYDF    K K   E   K+++N
Sbjct: 88  ALRYSQLNEALRRKKSVTLYDFLNKKKNKTNLEKKAKIKDN 115

[Close]

BLAST of Lcy02g006890 vs. TAIR 10
Match: AT5G55690.1 (MADS-box transcription factor family protein )

HSP 1 Score: 45.1 bits (105), Expect = 4.7e-05
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 2  KKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGMI 61
          KKRK  L KKA E STLC V TCV+++ PS      R+  +   E   W  + SK+  ++
Sbjct: 22 KKRKACLYKKASEFSTLCGVDTCVIVYGPS------RAGDEMVMEPELWPKDGSKVREIL 80

Query: 62 RAYKN 67
            Y++
Sbjct: 82 TKYRD 80

[Close]

BLAST of Lcy02g006890 vs. TAIR 10
Match: AT5G40220.1 (AGAMOUS-like 43 )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 27/89 (30.34%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 1  MKKRKKSLMKKAYELSTLCDVRTCVLIHDPSLAPNEDRSHSQSEQEIHTWTPNRSKIEGM 60
          +  R +++ KKA EL TLCD+  CV+ + P             + E+ TW P R K+  +
Sbjct: 21 LSNRLETIFKKASELCTLCDIEACVIYYGP-------------DGELKTWPPEREKVRDI 80

Query: 61 IRAYK--NNYFRKQRCFDLYDFFLDWKRK 88
             Y   N   R+++  +L+  FL+ K+K
Sbjct: 81 ALRYSQLNEALRRKKSVNLHG-FLNKKKK 95

The following BLAST results are available for this feature:

BLAST of Lcy02g006890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIX0	2.7e-05	32.04	Agamous-like MADS-box protein AGL81 OS=Arabidopsis thaliana OX=3702 GN=AGL81 PE=...	[more]
Q9FIM0	2.7e-05	44.62	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=...	[more]

BLAST of Lcy02g006890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4C8	9.2e-25	60.18	agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC11144227...	[more]
A0A6J1J5U6	4.6e-24	59.29	agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ...	[more]
A0A6J1CQM2	2.0e-19	58.00	uncharacterized protein LOC111013282 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CQB5	3.7e-18	53.77	uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQB2	3.7e-18	53.77	uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lcy02g006890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935361.1	1.9e-24	60.18	agamous-like MADS-box protein AGL14 [Cucurbita moschata]	[more]
XP_023528957.1	9.4e-24	59.29	agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo]	[more]
XP_022983430.1	9.4e-24	59.29	agamous-like MADS-box protein AGL14 [Cucurbita maxima]	[more]
KAG6581223.1	4.7e-23	58.41	Agamous-like MADS-box protein AGL82, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_038887053.1	2.3e-22	56.14	agamous-like MADS-box protein AGL82, partial [Benincasa hispida]	[more]

BLAST of Lcy02g006890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39750.1	1.9e-06	32.04	AGAMOUS-like 81	[more]
AT5G58890.1	1.9e-06	44.62	AGAMOUS-like 82	[more]
AT5G39810.1	3.2e-06	30.69	AGAMOUS-like 98	[more]
AT5G55690.1	4.7e-05	38.46	MADS-box transcription factor family protein	[more]
AT5G40220.1	1.8e-04	30.34	AGAMOUS-like 43	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 1..71 e-value: 7.2E-13 score: 50.1
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..58
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 2..31 e-value: 4.1E-11 score: 42.2
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..27 score: 10.666212
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..98
None	No IPR available	PANTHER	PTHR11945:SF176	AGAMOUS-LIKE MADS-BOX PROTEIN AGL82	coord: 2..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g006890.1	Lcy02g006890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
molecular_function	GO:0000987	cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding