Lcy02g005790 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g005790
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	cytochrome c oxidase subunit 5b-1, mitochondrial-like
Location	Chr02: 7475018 .. 7479506 (-)
RNA-Seq Expression	Lcy02g005790
Synteny	Lcy02g005790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGGAGATTGCTCTCTTCGCAGCTCAAAGCCCTAAAACCTCTTCCTTCTTCATCCACCGCAGCATCTGCTCCCTCGCGATCCATTTCCGGAGCCTCACGACTTGCCCTTCCTTCTTCATCTCACGTTTCTCCCTCGCCTCCCGTTTCGCTCTTCCCTCGCCATTACGGCGCCGAGGCCGGTAGATCCTACTCTACGCTTTCGATTTTCATACTCATAACTCATGGATTATTACTTTTTGTACTGTTTTGTTTCAAAATGAATCTGTAGTATGAGTGCGGACGTGGATTTGGTCTCGTGTGATTATTGATTTGGTTTTTGTTGTAAATTAGTTGATGCTGGCTTGAAGAAGGTTGAGGATGTAATGCCGATTGCAACCGGACACGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGTTATATTTCTTGTTTTTTGTTGCGTGCTTTCATTTTTCGATTTTGATGTTGAAAAAAAACAGCGGAATAGAAGCTGAAAAGAGGCAAGTAAAAGATGGTTTCCGTCAATTTCATGGAAAGGTCAATGTCGAACTTCTACGTATATCTTGTTATTTATATTAGTGGACGATCGATTTATCGAACAAATTGATTTCCGCTGTTCCTTGAATTGGTTGAAGAAACGATCTAGGATATTTCGTGACGAAAAGAATTTCCTGTATGAGGCCTGAGGATGTGAGCTCATTTCTATTTCAAATATGTAGATAGATTCTACAGAGGTATAGGTGTAATAGTCAACGAATAAAAGAAGTAGCCTACAACCAATGTACACGTGTGCTGAAAGGTACAACAGAATGATTGAGCAATCATTACAATGCACAAGCTGAGCCAACAACCTTCTGGGTCTGTTTGGCTAAAGGTTCTGGAATGATAGGTACCAAACGACACAACATCGTCCAGTCAAGTTGTCGTATTTAGTGGGCTACTTAAATTTCTTGACACATTTCTCATGTTAGACCAAGTCTGGTTTATGTAAATATTTTCGTTGGTTTGCATCTGATGTATTTCTCACTCTGGTGGCAAGTCTCATTTCAATTGGTTTTATGTTTGCAGGGTAGAGACATCCTTGATATAAACAACCCTGTTGGCCCTTTTGGCACTAAGGTTGGTATAGTTTGCAGTTAATTTTATTTTCGCACACTTTGGGTTGTGTCTTATGCCGCTCAAGTAGGCCCTTTTGCTTCCTCTCTCCATACTCCATATTGATGTTTTATTTGTTATAAATAAAGCAACATGAGATGGTGAATTATACTTTTCATGTTGTGTATGCGTGTGTGTTTACCCATAATTTATGTGCCAAATTATTGTTAGAGTCTGAGGGCTTTTGGGTTACTCAAAAAGGTAAGCATGCTCTCTTTAGTTTGGATATATCTGGAAGAAGATTGACTGATAAAAGATTGAACTTTTGGATGTATTCAGTTCGAACTATGTGTTTGGCAATTTGGTAAGAAAGAAATAGCGTTATTTTCTAAGACAAATTTATTGCTTGAGTTTTTGGGTATTAGTCTTATTTTTCACTTTATGTTTGTCTAAGAATATACTAATTTGGCCAACTTCAGCATAGTGCAACTGGCATAAAAGTTTGTACCAAATGACCAAGAGGTTTGTGGTTCAAATCCTTCATCTCACACATGTTGTAAATATATATATATATATATATATATATATATACTAATGTGTGGTCTCACTAGTTGAGGAGGAACTGGAACTATGTTTTGCTCTGTTTACTATGGATGGTCTATCTACTTTTTTATTTTTTTCCTTGATTAGAAACAAATTTCATTGATAAATAAAATATATAGGAGTTTCCAAAAGGTTCCCCGGTTTTGCTATGATTGAAGATAAGGGGTAGTTACAAAAAAAAAACTTTTATCATAAGAGGCTCAATAAGAACTAAGAAGCCACAAATATCTCAAGGTCCGATTTTTTTTCTACAAGACTCCAATTTTGGAAACTGTACTGCTTCTTTCCAACCACACCTTCCAAAAGAAATGGGAAAATACCATTATTCCGTAGGTTTCTTTCCTTATCTTGGATCTTTGACCTGTCGACATTTGAGGAGTAAAATCCTTAATTACCCAAAGCCACTTAGAGAAATGGCAGTTCAATAAAACTTGTTCTGCAGGATCTTCATTCTTTTTATGTAAAATAGGCGTTTTGGGAAAAATATAGGGGAGAGTTCTTTGAGCAACACCATTTGTGTTGATCCTTTTGGGAAAATTGACCAAGGGAACACCTTGCACATTTTAGATAGCTTGCTGTACGAAATATTTTGTATAAATCCAGGAGAATGGAGGTTCTTCAAAAACCAAAATGAGTTGGGAAGGTAACTGAAAAGGAACTGGAAGAAGTGAGATTTCAAGCTTTTGAAGCCTGGTTAAGGAGACGTGAATTGCATCTAACCCACTACCAAGGATAGCTCGCTCTTCAATTTCTCTACCTGTCATTCTTATTTGAACAGAAACTTCAGACCAAGGTCACCCTTACCCCACAAGTCTTGCCAGTGCTCCTTCCCAGTCAGCAACCTCATATAGCCATCTAAACTTCTCACTGAAAGTATAGGAACTTCCTTTTGTAAATTGACCAGTGAAGTCGCTTCCATATTTGCGAGCAACCATATTTGTGCGCTCGGTTTGGAACAATTTGTTTGAGATTTTTGAGCTTCAATTCGCTAGACACAGGGATCTCAGAGAGATGATCGATGAGTTCCTTCCCCATCCTCCTTTTCGGGACCAAGGAAATTTCTTATGGCAAGCTGGGATTTGTGCTATCATTTGGGGTTTGTGGGGGGAGAGAAATAACAGAATTTTTAGAGGGAAGGAGAGTAATGCGGAGGATGTTTGGGACATTATTAAATATTCTGTCTCTTTATGGGTGTCGGTGACGCGTTTATTTTGTAATTATCCTTTAGGTCTTATTTTGTTAGGTTGGCGTCCCTTTATCTAAGGGGATTTCCTTTTGGGGCTTGGTTTTTTTGTATGCCCCTGTTGGTTCATTATCAAAAAAATATTTGCGAGCAACCACCTTGGCCTGAAAGAAAACTATGTGCCCCAGGAATATTCCTTTGTGAATTGCCTGGTGAAGTTCTTTCCATGTTTGTTAGCAATTACTATAACGCGGAAGAGAACTAGGCTCCTTAGGAAGTCTCCATGACCATTTGCAAAGAAGAACAAACCATATTCCATGTTTTGTATTCCAAATGCTTAGATCTCCGTTCTCGAGAGGGAGAGAGACCACAGACCATATTGCATCTAACAAGGTGAAAAATGAAAGAAAGAAAGTGTAAGGGGAAGTTGGAAAAAAATTCTCATTTTCTTGATTAGAGTATATCCTCTTGCTGCCACCCAAGCGAGGATTTTTACTGCAGTTGTTTCCATTTTATTTATTTATTTTAAAACTATGTCATTTCTGTTTTGTTTGTAGCTGGGTGTTTATTTTGCATTCTGTGACCTTGAATGTTAATACTTCTATTGAGGGTTTACTTTGCTCCAATAAAGCCGGTAACTTTCTTAGCGATATACTGTGAGAGGATGTGCATGAAGGAATAAGTTTAGTTGCATGAATTATTTCCTTGGATGAAATCTAAGTCCTTTCTTATTTCTTTAGGAAGCTCCTGCTGTTATTAAGTCATATTATGATGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGGTGGGTACTTGCAATCTCTCTTTTTTTATCCATGCTCATCATTTTTATGCAAGTCTGTCAAAATTTTACATGAGTAAATCTTGCGTTCTTCCTCTACACATGAGGAATTCCAACTTACTGCTGTTGCTTCCTTTCAACTTGTAGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAAGAAAGGCGAGCCACATGAATGCCCTGTGTGCACACAGTACTTTATGGTGAGAATTTATTGTAAATTATTACGTTATGTTGTCTTGATATAGAATGCTGGAAATGAACTTAAAAGAAAAAAACTAAATTTCAACGATAGAATAAACCTTACCAAAGATTACAAACTGTTATTATGAGTCTTTATGCATGCCCAACTCGAGCATAGCTCAACTAGTTAGGACATTATACTTCGACCATAATGTTGGAGGTTCGAATTTTTATCTCATATGTTTGAATGAGAAAAAAAAGAAGTTATTTATGCTTGATAAATTATATATACGTATATTTAATTACAAAAAGAATTACTTCTGTTCCTCCTTGCAAATGTGAGGTTCATGGTGGGTCAATTGCGTTCTGGTTATTATTTGAATGCATGATTCTATGGAGTCTCAGTGAGTTTTACTGTTAGTTCTCTCTCTCTAATTATCCCACTCCTTGAATGGGATAAAGGCATTGATGTCTTAATTAGTAATTACTTAGAAGTGCCGAATTTTTATAATTATGTAAATTGTGTTCGCAGCTGGAAGTGGTGGGACCTGGAGGTTCGCCAGATGGTTATGGAGATGATGATCACCATCATTGA

mRNA sequence

ATGTGGAGGAGATTGCTCTCTTCGCAGCTCAAAGCCCTAAAACCTCTTCCTTCTTCATCCACCGCAGCATCTGCTCCCTCGCGATCCATTTCCGGAGCCTCACGACTTGCCCTTCCTTCTTCATCTCACGTTTCTCCCTCGCCTCCCGTTTCGCTCTTCCCTCGCCATTACGGCGCCGAGGCCGTTGATGCTGGCTTGAAGAAGGTTGAGGATGTAATGCCGATTGCAACCGGACACGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGGTAGAGACATCCTTGATATAAACAACCCTGTTGGCCCTTTTGGCACTAAGGAAGCTCCTGCTGTTATTAAGTCATATTATGATGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAAGAAAGGCGAGCCACATGAATGCCCTGTGTGCACACAGTACTTTATGCTGGAAGTGGTGGGACCTGGAGGTTCGCCAGATGGTTATGGAGATGATGATCACCATCATTGA

Coding sequence (CDS)

ATGTGGAGGAGATTGCTCTCTTCGCAGCTCAAAGCCCTAAAACCTCTTCCTTCTTCATCCACCGCAGCATCTGCTCCCTCGCGATCCATTTCCGGAGCCTCACGACTTGCCCTTCCTTCTTCATCTCACGTTTCTCCCTCGCCTCCCGTTTCGCTCTTCCCTCGCCATTACGGCGCCGAGGCCGTTGATGCTGGCTTGAAGAAGGTTGAGGATGTAATGCCGATTGCAACCGGACACGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGGTAGAGACATCCTTGATATAAACAACCCTGTTGGCCCTTTTGGCACTAAGGAAGCTCCTGCTGTTATTAAGTCATATTATGATGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTCGGCTGAAGAAAGGCGAGCCACATGAATGCCCTGTGTGCACACAGTACTTTATGCTGGAAGTGGTGGGACCTGGAGGTTCGCCAGATGGTTATGGAGATGATGATCACCATCATTGA

Protein sequence

MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAEAVDAGLKKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYGDDDHHH

Homology

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BLAST of Lcy02g005790 vs. ExPASy Swiss-Prot
Match: Q9LW15 (Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-1 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-54
Identity = 111/182 (60.99%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASR----LALPSSSHVSPSPPVSLFPRH 60
           MWRR++SSQLK L    ++   A++P RSI+  +R        + S +S S  V   PR 
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFV--IPRR 60

Query: 61  YGAEAVDA-GLKKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSY 120
           + +++V+    KKVEDVMPIATGHE+EELEA LEGR + DI+ P GPFGTKEAPA++KSY
Sbjct: 61  FSSDSVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSY 120

Query: 121 YDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG--DDDH 176
           YD+R+VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF LEVVGPGG PDG+G  DD+H
Sbjct: 121 YDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEH 176

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BLAST of Lcy02g005790 vs. ExPASy Swiss-Prot
Match: Q9SSB8 (Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-2 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.7e-53
Identity = 106/174 (60.92%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWRR++SS LK++  +   S AA +   ++  ++ L+L + +   P+   S+F R  G+ 
Sbjct: 1   MWRRIVSSHLKSISAV--GSCAAPSCRHAVVESTHLSLSTRASSIPAYS-SIFSRLIGSA 60

Query: 61  AVDAGLKK-VEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDER 120
           A D  +KK VEDVMPIATGHE+EEL+A LEGR + DI+ P GPFGTKEAPAV+KSYYD R
Sbjct: 61  AADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMR 120

Query: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYGDDDH 174
           +VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF LEVVGPGG PDG+GDD H
Sbjct: 121 IVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171

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BLAST of Lcy02g005790 vs. ExPASy Swiss-Prot
Match: Q9SSS5 (Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN=At1g52710 PE=3 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-27
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 84  LEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGE 143
           L+    GR +LDI++P  PFGTKE+PAV++SY+D+R +GC GGEGED HDVVWF L KG+
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 144 PHECPVCTQYFMLEVVGPGGSPDGYGDD-DHHH 176
             ECPVC+QYF        G PDG+GDD DHHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

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BLAST of Lcy02g005790 vs. ExPASy Swiss-Prot
Match: P29505 (Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum OX=44689 GN=cxeA PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-07
Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 101 GPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVG 160
           G FGT ++P +++S +  R+V C GG+GE EHD+++  + + +P  C  C Q F L+ + 
Sbjct: 54  GAFGTLKSPVIVESIFHSRIVACEGGDGE-EHDILFHTVAEKKPTICLDCGQVFKLKHIS 113

Query: 161 PGG 164
             G
Sbjct: 114 SEG 115

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BLAST of Lcy02g005790 vs. ExPASy Swiss-Prot
Match: P79010 (Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox4 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 28/86 (32.56%), Postives = 41/86 (47.67%), Query Frame = 0


Query: 76  ATGHEREELEAALEGRDILDINN-PVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDV 135
           ATG ER EL + L GRD  D+        GT   P ++ S    R +GC G      H++
Sbjct: 72  ATGLERYELLSELSGRDAFDMKPLDASRKGTLTDPIMVTSLDPYRHIGCTGSP-SGSHNL 131

Query: 136 VWFRLKKGEPHECPVCTQYFMLEVVG 161
           +W  + K +   CP C   + L+ +G
Sbjct: 132 IWMTVYKDKLRRCPECGSVYKLKFMG 156

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BLAST of Lcy02g005790 vs. ExPASy TrEMBL
Match: A0A0A0KYD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004280 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 157/179 (87.71%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAAS-APSRSISGASRLALPSSSHVSPSPPVSLFPRHYGA 60
           MWRRLLS +L ALK LPSSSTAAS APS SIS ASRLA+ +SS VSPSP VSLF RH+ A
Sbjct: 1   MWRRLLSLRLSALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPYVSLFARHFSA 60

Query: 61  E-AVDAGLKK-VEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           E AVDAGLKK VEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG-DDDHHH 176
           ER+VGCPGGEG+DEHDVVWFRLKKGEPHECPVCTQYF LEVVGPGGSPDGYG DDDHHH
Sbjct: 121 ERIVGCPGGEGDDEHDVVWFRLKKGEPHECPVCTQYFTLEVVGPGGSPDGYGNDDDHHH 179

[Close]

BLAST of Lcy02g005790 vs. ExPASy TrEMBL
Match: A0A6J1KD83 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492803 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.1e-78
Identity = 150/177 (84.75%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWR+LL SQL+ALK  PS+S AASAP   IS ASRL + +SSHV PSP VS + RHYG E
Sbjct: 1   MWRKLLFSQLRALKSFPSTSAAASAPLGFISRASRLTVAASSHVFPSPHVSFYARHYGVE 60

Query: 61  AVDAGL-KKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDER 120
           A DAGL KKVEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYDER
Sbjct: 61  AADAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYDER 120

Query: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG-DDDHHH 176
           LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF+LEVVGPGGSPDGYG DDDHHH
Sbjct: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGNDDDHHH 177

[Close]

BLAST of Lcy02g005790 vs. ExPASy TrEMBL
Match: A0A6J1DJR7 (cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111021124 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 151/176 (85.80%), Postives = 158/176 (89.77%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWRRLLSS LK+LKP  SSSTA S PS SIS A+R   P+SSHVS SP VSLF RHYGAE
Sbjct: 1   MWRRLLSSHLKSLKPRTSSSTAPSPPSGSISRAAR--RPASSHVSSSPSVSLFARHYGAE 60

Query: 61  AVDAGL-KKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDER 120
           A  AGL KKV DVMPIATGHEREELEAALEGRDILDI++PVGPFGTKEAPAV+KSYYDER
Sbjct: 61  AAGAGLKKKVGDVMPIATGHEREELEAALEGRDILDIDHPVGPFGTKEAPAVVKSYYDER 120

Query: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYGDDDHHH 176
           LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF LEVVGPGGSPDG+GDDDHHH
Sbjct: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFALEVVGPGGSPDGFGDDDHHH 174

[Close]

BLAST of Lcy02g005790 vs. ExPASy TrEMBL
Match: A0A6J1GC67 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452829 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.2e-78
Identity = 149/177 (84.18%), Postives = 159/177 (89.83%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWR+ L SQL+ALK  PS+S AASAP   IS ASRL + +SSHV PSP VS + RHYGAE
Sbjct: 1   MWRKFLFSQLRALKSFPSTSAAASAPLGFISRASRLTVAASSHVFPSPHVSFYARHYGAE 60

Query: 61  AVDAGL-KKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDER 120
           AVDAGL KKVEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYDER
Sbjct: 61  AVDAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYDER 120

Query: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG-DDDHHH 176
           LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF+LEVVGPGGSPDG+G +DDHHH
Sbjct: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGFGNEDDHHH 177

[Close]

BLAST of Lcy02g005790 vs. ExPASy TrEMBL
Match: A0A5A7TM92 (Cytochrome c oxidase subunit 5b-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001540 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.0e-77
Identity = 153/178 (85.96%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAAS-APSRSISGASRLALPSSSHVSPSPPVSLFPRHYGA 60
           MWRRLLS  L ALK LPSSSTAAS APS SIS ASRLA+ +SS VSPSP VSLF RH+ A
Sbjct: 1   MWRRLLSLHLNALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPCVSLFARHFSA 60

Query: 61  E-AVDAGLKK-VEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           E AVDAGL+K VEDVMPIATGHEREELEA LEGRDILDINNPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLRKNVEDVMPIATGHEREELEATLEGRDILDINNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYGDDDHHH 176
           ER+VGCPGGEGEDEHDV+WFRL+KGEP ECPVCTQYF LEVVGPGGSPDGYGDDD HH
Sbjct: 121 ERIVGCPGGEGEDEHDVIWFRLRKGEPLECPVCTQYFALEVVGPGGSPDGYGDDDDHH 178

[Close]

BLAST of Lcy02g005790 vs. NCBI nr
Match: XP_038878141.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 308.1 bits (788), Expect = 4.7e-80
Identity = 157/177 (88.70%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWRRLLS QL ALK LPSSST   APS SIS ASRLA+ +SS+VSPSP +SLF RH+ AE
Sbjct: 1   MWRRLLSLQLNALKRLPSSST---APSVSISTASRLAVAASSYVSPSPYISLFARHFSAE 60

Query: 61  -AVDAGLKK-VEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDE 120
            AVDAGLKK VEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDE
Sbjct: 61  AAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDE 120

Query: 121 RLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYGDDDHHH 176
           RLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF+LEVVGPGGSPDGYGDDDHHH
Sbjct: 121 RLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 174

[Close]

BLAST of Lcy02g005790 vs. NCBI nr
Match: KAG6606781.1 (Cytochrome c oxidase subunit 5b-2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036494.1 Cytochrome c oxidase subunit 5b-2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.8 bits (774), Expect = 2.0e-78
Identity = 151/178 (84.83%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWR+LL SQL+ALK  PS+S AASAP   IS ASRL + +SSHV PSP VS + RHYGAE
Sbjct: 1   MWRKLLFSQLRALKSFPSTSAAASAPLGFISRASRLTVAASSHVFPSPHVSFYARHYGAE 60

Query: 61  AVDAGL-KKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDER 120
           AVDAGL KKVEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYDER
Sbjct: 61  AVDAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYDER 120

Query: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG--DDDHHH 176
           LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF+LEVVGPGGSPDG+G  DDDHHH
Sbjct: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGFGNDDDDHHH 178

[Close]

BLAST of Lcy02g005790 vs. NCBI nr
Match: XP_004152218.1 (cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis sativus] >KGN52866.1 hypothetical protein Csa_014612 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 3.4e-78
Identity = 157/179 (87.71%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAAS-APSRSISGASRLALPSSSHVSPSPPVSLFPRHYGA 60
           MWRRLLS +L ALK LPSSSTAAS APS SIS ASRLA+ +SS VSPSP VSLF RH+ A
Sbjct: 1   MWRRLLSLRLSALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPYVSLFARHFSA 60

Query: 61  E-AVDAGLKK-VEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           E AVDAGLKK VEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG-DDDHHH 176
           ER+VGCPGGEG+DEHDVVWFRLKKGEPHECPVCTQYF LEVVGPGGSPDGYG DDDHHH
Sbjct: 121 ERIVGCPGGEGDDEHDVVWFRLKKGEPHECPVCTQYFTLEVVGPGGSPDGYGNDDDHHH 179

[Close]

BLAST of Lcy02g005790 vs. NCBI nr
Match: XP_022998034.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 301.6 bits (771), Expect = 4.4e-78
Identity = 150/177 (84.75%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWR+LL SQL+ALK  PS+S AASAP   IS ASRL + +SSHV PSP VS + RHYG E
Sbjct: 1   MWRKLLFSQLRALKSFPSTSAAASAPLGFISRASRLTVAASSHVFPSPHVSFYARHYGVE 60

Query: 61  AVDAGL-KKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDER 120
           A DAGL KKVEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYDER
Sbjct: 61  AADAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYDER 120

Query: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG-DDDHHH 176
           LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF+LEVVGPGGSPDGYG DDDHHH
Sbjct: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGNDDDHHH 177

[Close]

BLAST of Lcy02g005790 vs. NCBI nr
Match: XP_023523888.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523889.1 cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 4.4e-78
Identity = 150/177 (84.75%), Postives = 159/177 (89.83%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWR+LL SQL+ALK  PS+S AASAP   IS ASRL + +SSHV PSP VS + RHYGAE
Sbjct: 1   MWRKLLFSQLRALKSFPSTSAAASAPLGFISRASRLTVAASSHVFPSPHVSFYARHYGAE 60

Query: 61  AVDAGL-KKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDER 120
           A DAGL KKVEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYDER
Sbjct: 61  AADAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYDER 120

Query: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG-DDDHHH 176
           LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYF+LEVVGPGGSPDGYG +DDHHH
Sbjct: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGNEDDHHH 177

[Close]

BLAST of Lcy02g005790 vs. TAIR 10
Match: AT3G15640.2 (Rubredoxin-like superfamily protein )

HSP 1 Score: 214.2 bits (544), Expect = 8.6e-56
Identity = 110/181 (60.77%), Postives = 135/181 (74.59%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASR----LALPSSSHVSPSPPVSLFPRH 60
           MWRR++SSQLK L    ++   A++P RSI+  +R        + S +S S  V   PR 
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFV--IPRR 60

Query: 61  YGAEAVDAGLKKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYY 120
           + +++     KKVEDVMPIATGHE+EELEA LEGR + DI+ P GPFGTKEAPA++KSYY
Sbjct: 61  FSSDSETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYY 120

Query: 121 DERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG--DDDHH 176
           D+R+VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF LEVVGPGG PDG+G  DD+HH
Sbjct: 121 DKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEHH 175

[Close]

BLAST of Lcy02g005790 vs. TAIR 10
Match: AT3G15640.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-55
Identity = 111/182 (60.99%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASR----LALPSSSHVSPSPPVSLFPRH 60
           MWRR++SSQLK L    ++   A++P RSI+  +R        + S +S S  V   PR 
Sbjct: 1   MWRRIVSSQLKTL----AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFV--IPRR 60

Query: 61  YGAEAVDA-GLKKVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSY 120
           + +++V+    KKVEDVMPIATGHE+EELEA LEGR + DI+ P GPFGTKEAPA++KSY
Sbjct: 61  FSSDSVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSY 120

Query: 121 YDERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYG--DDDH 176
           YD+R+VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF LEVVGPGG PDG+G  DD+H
Sbjct: 121 YDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEH 176

[Close]

BLAST of Lcy02g005790 vs. TAIR 10
Match: AT1G80230.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 6.2e-54
Identity = 106/174 (60.92%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 1   MWRRLLSSQLKALKPLPSSSTAASAPSRSISGASRLALPSSSHVSPSPPVSLFPRHYGAE 60
           MWRR++SS LK++  +   S AA +   ++  ++ L+L + +   P+   S+F R  G+ 
Sbjct: 1   MWRRIVSSHLKSISAV--GSCAAPSCRHAVVESTHLSLSTRASSIPAYS-SIFSRLIGSA 60

Query: 61  AVDAGLKK-VEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDER 120
           A D  +KK VEDVMPIATGHE+EEL+A LEGR + DI+ P GPFGTKEAPAV+KSYYD R
Sbjct: 61  AADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMR 120

Query: 121 LVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFMLEVVGPGGSPDGYGDDDH 174
           +VGCPGGEGEDEHDVVWF L+KG+  ECPVCTQYF LEVVGPGG PDG+GDD H
Sbjct: 121 IVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171

[Close]

BLAST of Lcy02g005790 vs. TAIR 10
Match: AT1G52710.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 84  LEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGE 143
           L+    GR +LDI++P  PFGTKE+PAV++SY+D+R +GC GGEGED HDVVWF L KG+
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 144 PHECPVCTQYFMLEVVGPGGSPDGYGDD-DHHH 176
             ECPVC+QYF        G PDG+GDD DHHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

The following BLAST results are available for this feature:

BLAST of Lcy02g005790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW15	2.1e-54	60.99	Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSB8	8.7e-53	60.92	Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSS5	2.2e-27	60.22	Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]
P29505	4.2e-07	36.51	Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum OX=44689 GN=cxeA PE=1...	[more]
P79010	3.6e-06	32.56	Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Lcy02g005790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYD4	1.6e-78	87.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004280 PE=4 SV=1	[more]
A0A6J1KD83	2.1e-78	84.75	cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1DJR7	2.8e-78	85.80	cytochrome c oxidase subunit 5b-2, mitochondrial-like OS=Momordica charantia OX=...	[more]
A0A6J1GC67	6.2e-78	84.18	cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita moschata OX=3...	[more]
A0A5A7TM92	4.0e-77	85.96	Cytochrome c oxidase subunit 5b-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lcy02g005790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878141.1	4.7e-80	88.70	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Benincasa hispida]	[more]
KAG6606781.1	2.0e-78	84.83	Cytochrome c oxidase subunit 5b-2, mitochondrial, partial [Cucurbita argyrosperm...	[more]
XP_004152218.1	3.4e-78	87.71	cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis sativus] >KGN52866.1 h...	[more]
XP_022998034.1	4.4e-78	84.75	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita maxima]	[more]
XP_023523888.1	4.4e-78	84.75	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pep...	[more]

BLAST of Lcy02g005790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15640.2	8.6e-56	60.77	Rubredoxin-like superfamily protein	[more]
AT3G15640.1	1.5e-55	60.99	Rubredoxin-like superfamily protein	[more]
AT1G80230.1	6.2e-54	60.92	Rubredoxin-like superfamily protein	[more]
AT1G52710.1	1.5e-28	60.22	Rubredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036972	Cytochrome c oxidase, subunit Vb superfamily	GENE3D	2.60.11.10	Cytochrome c oxidase, subunit Vb	coord: 66..159 e-value: 1.5E-30 score: 107.0
IPR002124	Cytochrome c oxidase, subunit Vb	PFAM	PF01215	COX5B	coord: 76..162 e-value: 6.3E-18 score: 64.7
IPR002124	Cytochrome c oxidase, subunit Vb	PANTHER	PTHR10122	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	coord: 1..175
IPR002124	Cytochrome c oxidase, subunit Vb	PROSITE	PS51359	COX5B_2	coord: 64..163 score: 22.01239
IPR002124	Cytochrome c oxidase, subunit Vb	CDD	cd00924	Cyt_c_Oxidase_Vb	coord: 64..161 e-value: 1.19257E-31 score: 107.77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..48
None	No IPR available	PANTHER	PTHR10122:SF16	SUBFAMILY NOT NAMED	coord: 1..175
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 68..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g005790.1	Lcy02g005790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005740	mitochondrial envelope