Lcy02g004540 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g004540
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transcription termination factor like
Location	Chr02: 5943424 .. 5944245 (-)
RNA-Seq Expression	Lcy02g004540
Synteny	Lcy02g004540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAATAATTAAAGTGGTTATTAGATATTTATGTTGAATTATAATATTAAAAATAAAATACCCAAATTTTATCCAGAGGACCTGGAACCTTCCTTTCATCTCCATCAAGCTCTCTGTTCCAAACATGGCGGCCACACGGTCAAAGAATCTCCGCCAATCCCTTTCCCTCTCTATAAAACCACCTTCAAACCTCCATTATCGCCATCCAATTTCAAATCCGCTCTTCTTCTTCTTCTTCTTCCTTCAGCGACTCTCAATTTCATCCTCTCCAAATCTCCATCCACCATGATGCCCAATTTCGAAATCGACGCCGGCGAATTCTTCTTCAAAATCGCCATGTTCGTCTTGGTTCAAGCTCTTGTCTATTTCATCCTCTCGAAATCGTCCAATCTCTTCTCCAAGGATGAGAAGTTGAGATCTCTCAGCTTTAAACCGGCCAGATCCGTCAGTATTCGCCGCTTTTTGGCGGCTCTTTCCGACCTGCCTCCCGGCGGCGAGCTTTCTCCGGCGGCGAGAGTTCCGACGCCGTCGTCTACTCGACGGGATCGTTCCGACGACGGTGCAAGGTTTTAGAGAATCGATCGGATCGAATTGAATCGACACCGATTGGCCGTATTGGTTGGGTAGCTGTGTAAAGTGAAAAGTAAGTAGGGGTAATTTATGTAATTTGTGAGAATAGAGGGTTGGTTTTGTGATTTTAGATGATTTGTATTTGTTATTTGAAAGATTCTTTTGTTCTTTGGTAATGGAAATTATTTAAAATATTTTCGATTTCTTTTGTACAACAAATGTGTGGATGAGAATTTGAACTTACGAGCTTA

mRNA sequence

TTAGAATAATTAAAGTGGTTATTAGATATTTATGTTGAATTATAATATTAAAAATAAAATACCCAAATTTTATCCAGAGGACCTGGAACCTTCCTTTCATCTCCATCAAGCTCTCTGTTCCAAACATGGCGGCCACACGGTCAAAGAATCTCCGCCAATCCCTTTCCCTCTCTATAAAACCACCTTCAAACCTCCATTATCGCCATCCAATTTCAAATCCGCTCTTCTTCTTCTTCTTCTTCCTTCAGCGACTCTCAATTTCATCCTCTCCAAATCTCCATCCACCATGATGCCCAATTTCGAAATCGACGCCGGCGAATTCTTCTTCAAAATCGCCATGTTCGTCTTGGTTCAAGCTCTTGTCTATTTCATCCTCTCGAAATCGTCCAATCTCTTCTCCAAGGATGAGAAGTTGAGATCTCTCAGCTTTAAACCGGCCAGATCCGTCAGTATTCGCCGCTTTTTGGCGGCTCTTTCCGACCTGCCTCCCGGCGGCGAGCTTTCTCCGGCGGCGAGAGTTCCGACGCCGTCGTCTACTCGACGGGATCGTTCCGACGACGGTGCAAGGTTTTAGAGAATCGATCGGATCGAATTGAATCGACACCGATTGGCCGTATTGGTTGGGTAGCTGTGTAAAGTGAAAAGTAAGTAGGGGTAATTTATGTAATTTGTGAGAATAGAGGGTTGGTTTTGTGATTTTAGATGATTTGTATTTGTTATTTGAAAGATTCTTTTGTTCTTTGGTAATGGAAATTATTTAAAATATTTTCGATTTCTTTTGTACAACAAATGTGTGGATGAGAATTTGAACTTACGAGCTTA

Coding sequence (CDS)

ATGTTGAATTATAATATTAAAAATAAAATACCCAAATTTTATCCAGAGGACCTGGAACCTTCCTTTCATCTCCATCAAGCTCTCTGTTCCAAACATGGCGGCCACACGGTCAAAGAATCTCCGCCAATCCCTTTCCCTCTCTATAAAACCACCTTCAAACCTCCATTATCGCCATCCAATTTCAAATCCGCTCTTCTTCTTCTTCTTCTTCCTTCAGCGACTCTCAATTTCATCCTCTCCAAATCTCCATCCACCATGATGCCCAATTTCGAAATCGACGCCGGCGAATTCTTCTTCAAAATCGCCATGTTCGTCTTGGTTCAAGCTCTTGTCTATTTCATCCTCTCGAAATCGTCCAATCTCTTCTCCAAGGATGAGAAGTTGAGATCTCTCAGCTTTAAACCGGCCAGATCCGTCAGTATTCGCCGCTTTTTGGCGGCTCTTTCCGACCTGCCTCCCGGCGGCGAGCTTTCTCCGGCGGCGAGAGTTCCGACGCCGTCGTCTACTCGACGGGATCGTTCCGACGACGGTGCAAGGTTTTAG

Protein sequence

MLNYNIKNKIPKFYPEDLEPSFHLHQALCSKHGGHTVKESPPIPFPLYKTTFKPPLSPSNFKSALLLLLLPSATLNFILSKSPSTMMPNFEIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPAARVPTPSSTRRDRSDDGARF

Homology

[Close]

BLAST of Lcy02g004540 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.8e-25
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 86  MMPNFEIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFL 145
           M P  E DAGE F +IAMFV VQ LVY ILSKSSNLFS D+KLRSLSFKPARSVSIRRFL
Sbjct: 1   MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 146 AALSDLPPGGELSPAARVPTPSSTRRDRSDDGAR 180
           AALSDLPPGGELS       PSS RR RSDDG +
Sbjct: 61  AALSDLPPGGELS-------PSSVRRGRSDDGCK 87

[Close]

BLAST of Lcy02g004540 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.8e-25
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 86  MMPNFEIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFL 145
           M P  E DAGE F +IAMFV VQ LVY ILSKSSNLFS D+KLRSLSFKPARSVSIRRFL
Sbjct: 1   MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 146 AALSDLPPGGELSPAARVPTPSSTRRDRSDDGAR 180
           AALSDLPPGGELS       PSS RR RSDDG +
Sbjct: 61  AALSDLPPGGELS-------PSSVRRGRSDDGCK 87

[Close]

BLAST of Lcy02g004540 vs. ExPASy TrEMBL
Match: A0A0A0LD48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G706170 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.2e-17
Identity = 66/144 (45.83%), Postives = 81/144 (56.25%), Query Frame = 0


Query: 36  TVKESPPIPFPLYKTTFKPPLSPSNFKSALLLLLLPSATLNFILSKSPSTMMPNFEIDAG 95
           TVKE P I   LYK   KPP S SNF     +  L +     + S+  S+ + +++ D  
Sbjct: 5   TVKEPPSIASSLYKKPSKPPFSVSNFTPIFFIHRLIN-----VSSRIFSSSILHYDAD-- 64

Query: 96  EFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFLAALSDLPPGG 155
                            F   +  ++     K+RSLSFKPARSVSIRRFLAALSDLPPGG
Sbjct: 65  -----------------FRYRRRRDVRQNRHKVRSLSFKPARSVSIRRFLAALSDLPPGG 124

Query: 156 ELSPAARVPTPSSTRRDRSDDGAR 180
           ELSP+ +V TPSS R DRSDDG R
Sbjct: 125 ELSPSTKVSTPSSARLDRSDDGGR 124

[Close]

BLAST of Lcy02g004540 vs. ExPASy TrEMBL
Match: A0A218WLF6 (uncharacterized protein LOC116198835 OS=Punica granatum OX=22663 GN=LOC116198835 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 95  GEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFLAALSDLPPG 154
           G+   K+ MFVLVQALVY ILSKSS++FSKD+  +SLSF+P RSVSIRRF+AALSD+P G
Sbjct: 10  GDVLLKVGMFVLVQALVYLILSKSSDVFSKDKAKKSLSFRPVRSVSIRRFMAALSDMPAG 69

Query: 155 GELSPAARVPTPSSTRRD 173
           GE SP+ R P   +T  +
Sbjct: 70  GEPSPSPRSPPSLTTTHE 87

[Close]

BLAST of Lcy02g004540 vs. ExPASy TrEMBL
Match: U5G004 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T131900 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 50/75 (66.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 91  EIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFLAALSD 150
           E   G+   K+AMFV+VQ LVY ILSKSSN+FSK    RS SFK ARSVSIRR LA L D
Sbjct: 4   ESSLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDKRSSSFKTARSVSIRRILAVLQD 63

Query: 151 LPPGGELSPAARVPT 166
           LPPGGELSPA+   T
Sbjct: 64  LPPGGELSPASSKST 78

[Close]

BLAST of Lcy02g004540 vs. NCBI nr
Match: KAG6606858.1 (hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036564.1 hypothetical protein SDJN02_00183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-30
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 86  MMPNFEIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFL 145
           MMP  EIDAGEFF KIAMF+LVQ LVYFILS+SS+LFSKD+KL+SLSFKPARSVSIRRFL
Sbjct: 1   MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60

Query: 146 AALSDLPPGGELSPAARVPTPSSTRRDRSDDGARF 181
           AALSD+P GGELSP++RV TPS   R+ SDDG RF
Sbjct: 61  AALSDMPSGGELSPSSRVRTPSPIHREHSDDGGRF 95

[Close]

BLAST of Lcy02g004540 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 4.6e-30
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 86  MMPNFEIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFL 145
           M P F+ DAGE F +IAMFV +Q LVY ILSKSSNLFS D+K+RSLSFKPARSVSIRRFL
Sbjct: 1   MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 146 AALSDLPPGGELSPAARVPTPSSTRRDRSDDGAR 180
           AALSDLPPGGELSP+ +V TPSS RRDRSDDG R
Sbjct: 61  AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR 94

[Close]

BLAST of Lcy02g004540 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-28
Identity = 74/95 (77.89%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 86  MMPNFEIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFL 145
           M P  E D  E F KIAMF  VQ LVY ILSKSSNLFS D+KLRSLSFKPARSVSIRRFL
Sbjct: 1   MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 146 AALSDLPPGGELSPAARVPTPSSTRRDRSDDGARF 181
           AALSDLPPGGE+SP  RV TPSS RRD SDDG RF
Sbjct: 61  AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGRF 95

[Close]

BLAST of Lcy02g004540 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-26
Identity = 71/95 (74.74%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 86  MMPNFEIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFL 145
           M+   E D    F KIAMFV VQ LVY ILSKSSNLFS D+KLRSLSFKPARSVSIRR L
Sbjct: 1   MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 146 AALSDLPPGGELSPAARVPTPSSTRRDRSDDGARF 181
           AALSDLPPGGELSP++ V TPSS RR+RSDD  RF
Sbjct: 61  AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF 95

[Close]

BLAST of Lcy02g004540 vs. NCBI nr
Match: KAG6581607.1 (hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-25
Identity = 69/91 (75.82%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 86  MMPNFEIDAGEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKLRSLSFKPARSVSIRRFL 145
           M+   E D    F KIAMFV VQ LVY ILSKSSNLFS D+KLRSLSFKPARSVSIRR L
Sbjct: 1   MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 146 AALSDLPPGGELSPAARVPTPSSTRRDRSDD 177
           AALSDLPPGGELSP++ V TPSS RR+RSDD
Sbjct: 61  AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91

[Close]

BLAST of Lcy02g004540 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-13
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 100 KIAMFVLVQALVYFILSKSSNLFSKDEKL-RSLSFKPARSVSIRRFLAALSDLPPGGELS 159
           K+++F L+Q LVY ILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GGE+S
Sbjct: 11  KVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGGEMS 70

Query: 160 PAARVPTPSSTRRDRSD 176
           P+A  P+ +S+    S+
Sbjct: 71  PSAMGPSLASSLSSPSE 87

[Close]

BLAST of Lcy02g004540 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 95  GEFFFKIAMFVLVQALVYFILSKSSNLFSKDEKL-RSLSFKPARSVSIRRFLAALSDLPP 154
           G    K+A+F LVQ LVY IL KSS +F++   L R+ SF+P RSVSIRR LAAL D+P 
Sbjct: 6   GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65

Query: 155 GGELSPAARVPTPSS 169
           G ++SP++   + SS
Sbjct: 66  GDDMSPSSNGSSSSS 80

The following BLAST results are available for this feature:

BLAST of Lcy02g004540 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g004540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC63	4.8e-25	75.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFW1	4.8e-25	75.53	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
A0A0A0LD48	8.2e-17	45.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G706170 PE=4 SV=1	[more]
A0A218WLF6	1.2e-15	62.82	uncharacterized protein LOC116198835 OS=Punica granatum OX=22663 GN=LOC116198835...	[more]
U5G004	3.5e-15	66.67	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T131900 PE=4 SV=...	[more]

BLAST of Lcy02g004540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606858.1	3.5e-30	78.95	hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011651805.2	4.6e-30	78.72	uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
XP_038905322.1	2.5e-28	77.89	uncharacterized protein LOC120091388 [Benincasa hispida]	[more]
KAG7018107.1	1.4e-26	74.74	hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581607.1	3.4e-25	75.82	hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy02g004540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	5.5e-13	50.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	1.6e-12	52.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..180
None	No IPR available	PANTHER	PTHR34268:SF8	OS01G0321850 PROTEIN	coord: 93..177
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 93..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g004540.1	Lcy02g004540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane