Lcy02g004320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g004320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	AAI domain-containing protein
Location	Chr02: 5719162 .. 5720554 (-)
RNA-Seq Expression	Lcy02g004320
Synteny	Lcy02g004320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAATGTTCATTTTTTTCACAGTACAAGCGTTGATATTATTGAAGTAAACAAGTTCTTGTGTGAGAAGATGGGGTTTCTAGGCATGAAATGTGTGTCAGTTTGGATGTTTTTATTGGTGATGACAAGTTTGGCTGAACAAAGCAAAGGCGAAACTTGTAGTTTCACCTTCTTTTCTTCCCTTGTTAGGTTGATTCCTTGCAGGCCATCGGTTGCTCCATTCCGCCCCATCCCGCCGACCGTGGCCTGTTGCAATGCTGTCAAATCTCTCGGCCAGCCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCAATTGCCGGCGTTGATCGCGACTTGGCCATGCTGTTGCCGGAGAAGTGCACTGCCAATTTTGACCCATGTACACACTCTCTCTATCTCCTTATAATGTGTTTTTGTTTTGAGAATTTAAGAAGTTAATTAAAAAACCTGCAAAATATAAGATAACAATGAAAAAGGCGGAAGCTCTGCACATGGTTTAGTGGATAAGGTACTTATTTTACTATTTTTTATGTTGATGGTTTGAACCCCACCGCCCCAATAGTTAAACTAAAAAAAAGTCAAAGATTCCAAACTGATGAATGAACATAATTTAATTGGTTTAGATATTAGTAACGTCTCCAAAAGGTTAGAGGTTTGAATCTCCAATCCTATCTTATTAAATTGGAAGTAGAAAAAACCATGTGGTTTTGTGTTTTTAGCTTTGATATTGTGTAAAATTATGCAAATCTATTATCAAAGACACAAGAAATATTTATAAAAGTTCAAATCCGTTTGATAACCTTTTGGTTTTTGGTTTTTGAAAATTAAGCTTATAAACACTAATTCAATTTTCTTTGTTTTGTTATCTACCTTATTGTCTTGTTTTCAAAAACCAAGTCAAGTTTTGAAAACTAAAAAAAAAATAATTTTCAAAAATTTGTTTTTATTTTTAGAATTTACCTAAGAATTCAAATGTGTTCTTAATAAAGATGAAAATCACTATAAGGAAATTGGGAGAAAACAAGTATAATTTTCAAAGACCAAAAATAAAAAACGAAATGGTTGTCAAATGGGCACAAATAATTATCAAATGAGGTCTTAACTACCAAAACATAATATTTTTGGAGTATGAATTTCTTGTATTCTTGTCGGTTAGTGAAAAAAAATTTGAAAATTTTATTGCTATTGTAAACATTAAAAGAAACTTTGTTGAGTAGTTTAGGCATATTTACCTTCATTAAACTGCTGGATATTTGTATCTTCACTTCGTATTTGTGATGTATTAAAAAAAAAAAAGGTATTTTCGAAATAAAGTATCTTATACAATTTTCCTCTGATTTTCTGATTCATAATTGGTGCCGTTTTGAATTGTGCAGGTGAAATCATGAAATAA

mRNA sequence

ATGCCAAATGTTCATTTTTTTCACAGTACAAGCGTTGATATTATTGAAGTAAACAAGTTCTTGTGTGAGAAGATGGGGTTTCTAGGCATGAAATGTGTGTCAGTTTGGATGTTTTTATTGGTGATGACAAGTTTGGCTGAACAAAGCAAAGGCGAAACTTGTAGTTTCACCTTCTTTTCTTCCCTTGTTAGGTTGATTCCTTGCAGGCCATCGGTTGCTCCATTCCGCCCCATCCCGCCGACCGTGGCCTGTTGCAATGCTGTCAAATCTCTCGGCCAGCCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCAATTGCCGGCGTTGATCGCGACTTGGCCATGCTGTTGCCGGAGAAGTGCACTGCCAATTTTGACCCATGTGAAATCATGAAATAA

Coding sequence (CDS)

ATGCCAAATGTTCATTTTTTTCACAGTACAAGCGTTGATATTATTGAAGTAAACAAGTTCTTGTGTGAGAAGATGGGGTTTCTAGGCATGAAATGTGTGTCAGTTTGGATGTTTTTATTGGTGATGACAAGTTTGGCTGAACAAAGCAAAGGCGAAACTTGTAGTTTCACCTTCTTTTCTTCCCTTGTTAGGTTGATTCCTTGCAGGCCATCGGTTGCTCCATTCCGCCCCATCCCGCCGACCGTGGCCTGTTGCAATGCTGTCAAATCTCTCGGCCAGCCTTGCTTGTGTGTGCTTGTCAATGGCCCTCCAATTGCCGGCGTTGATCGCGACTTGGCCATGCTGTTGCCGGAGAAGTGCACTGCCAATTTTGACCCATGTGAAATCATGAAATAA

Protein sequence

MPNVHFFHSTSVDIIEVNKFLCEKMGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVACCNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK

Homology

[Close]

BLAST of Lcy02g004320 vs. ExPASy TrEMBL
Match: A0A6J1GCG0 (protein LIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111452716 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           MGFLGMKCVSVW+FL+V TSL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           CNAV+SLGQPCLCVLVNGPP+AGVDRDL MLLPEKC  NFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

[Close]

BLAST of Lcy02g004320 vs. ExPASy TrEMBL
Match: A0A6J1KEI1 (protein LIM3-like OS=Cucurbita maxima OX=3661 GN=LOC111493120 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.1e-50
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           M FLGMKCVSVW+FL+V TSL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPT AC
Sbjct: 1   MRFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTAAC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           CNAV+SLGQPCLCVLVNGPP+AGVDRDL MLLPEKC  NFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

[Close]

BLAST of Lcy02g004320 vs. ExPASy TrEMBL
Match: A0A6J1DFH7 (protein LIM3 OS=Momordica charantia OX=3673 GN=LOC111020340 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.9e-48
Identity = 94/107 (87.85%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           MGFLGMK +S W+FLLVMTSL EQSKGETC FTFFSSLVRL+PCRPSVAPFR IPPT AC
Sbjct: 1   MGFLGMKFLSAWVFLLVMTSLGEQSKGETCRFTFFSSLVRLLPCRPSVAPFRAIPPTEAC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           C AVK+LGQPCLCVLVNGPPIAGVDRDLAMLLPEKC ANFDPCE+MK
Sbjct: 61  CKAVKTLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCNANFDPCELMK 107

[Close]

BLAST of Lcy02g004320 vs. ExPASy TrEMBL
Match: A0A1S3CFZ5 (protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.6e-48
Identity = 89/109 (81.65%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 21  LCEKMGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPP 80
           LC+ MG+L MKC+ VW+FLL  TSL E+ KGETCSFTFFSSL RL+PCRPSVAPFRPIPP
Sbjct: 13  LCKNMGYLSMKCLPVWLFLLATTSLVEKGKGETCSFTFFSSLARLMPCRPSVAPFRPIPP 72

Query: 81  TVACCNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEI 130
           TVACCNAVK+LGQPCLCVLVNGPPI GVDR+LAMLLP+KCTA+FDPCE+
Sbjct: 73  TVACCNAVKTLGQPCLCVLVNGPPITGVDRELAMLLPQKCTADFDPCEM 121

[Close]

BLAST of Lcy02g004320 vs. ExPASy TrEMBL
Match: A0A6P5ZVI2 (protein M7 OS=Durio zibethinus OX=66656 GN=LOC111304477 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 9.8e-36
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           M   G K +   +F+LV+T L EQ +G  CS TFFS+LV+LIPCR +VAPF PIPP+  C
Sbjct: 1   MKLFGSKALPSLVFVLVLTGLLEQGEGTACSSTFFSALVQLIPCRAAVAPFSPIPPSETC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           CNA+KSLGQPCLCVLVNGPPI+GVDR++A+ LPEKCTANF+PC+IMK
Sbjct: 61  CNAIKSLGQPCLCVLVNGPPISGVDRNMALQLPEKCTANFEPCDIMK 107

[Close]

BLAST of Lcy02g004320 vs. NCBI nr
Match: XP_038903285.1 (protein LIM3 [Benincasa hispida])

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-50
Identity = 98/107 (91.59%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           MG+L MK +SVW+FLL  TSLAEQSKGETCSFTFFSSLVRL+PCRPSVAPFRPIPPTVAC
Sbjct: 1   MGYLSMKFLSVWVFLLATTSLAEQSKGETCSFTFFSSLVRLMPCRPSVAPFRPIPPTVAC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           CNAVK+LGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK
Sbjct: 61  CNAVKTLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 107

[Close]

BLAST of Lcy02g004320 vs. NCBI nr
Match: XP_022949330.1 (protein LIM1-like [Cucurbita moschata])

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-50
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           MGFLGMKCVSVW+FL+V TSL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           CNAV+SLGQPCLCVLVNGPP+AGVDRDL MLLPEKC  NFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

[Close]

BLAST of Lcy02g004320 vs. NCBI nr
Match: KAG7036573.1 (hypothetical protein SDJN02_00192, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 3.8e-50
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           MGFLGMKCVSVW+FL+V TSL EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGMKCVSVWVFLVVTTSLCEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           CNAV+SLGQPCLCVLVNGPP+AGVDRDL MLLPEKC  NFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

[Close]

BLAST of Lcy02g004320 vs. NCBI nr
Match: XP_022998504.1 (protein LIM3-like [Cucurbita maxima])

HSP 1 Score: 207.6 bits (527), Expect = 6.5e-50
Identity = 96/107 (89.72%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           M FLGMKCVSVW+FL+V TSL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPT AC
Sbjct: 1   MRFLGMKCVSVWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTAAC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           CNAV+SLGQPCLCVLVNGPP+AGVDRDL MLLPEKC  NFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

[Close]

BLAST of Lcy02g004320 vs. NCBI nr
Match: XP_023524609.1 (protein LIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-49
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 25  MGFLGMKCVSVWMFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVAC 84
           MGFLG+KCVS+W+FL+V TSL+EQSKGETCSFTFFSSLVRLIPCRPSVAPFRP PPT AC
Sbjct: 1   MGFLGIKCVSIWVFLVVTTSLSEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPTPPTAAC 60

Query: 85  CNAVKSLGQPCLCVLVNGPPIAGVDRDLAMLLPEKCTANFDPCEIMK 132
           CNAV+SLGQPCLCVLVNGPP+AGVDRDL MLLPEKC  NFDPCEIMK
Sbjct: 61  CNAVRSLGQPCLCVLVNGPPVAGVDRDLVMLLPEKCPTNFDPCEIMK 107

[Close]

BLAST of Lcy02g004320 vs. TAIR 10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-28
Identity = 50/77 (64.94%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 54  CSFTFFSSLVRLIPCRPSVAPFRPIPPTVACCNAVKSLGQPCLCVLVNGPPIAGVDRDLA 113
           CS TFFS+LV+LIPCR +VAPF PIPPT  CC+AV +LG+PCLC+L NGPP++G+DR +A
Sbjct: 48  CSRTFFSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSMA 107

Query: 114 MLLPEKCTANFDPCEIM 131
           + LP++C+ANF PC+I+
Sbjct: 108 LQLPQRCSANFPPCDII 124

[Close]

BLAST of Lcy02g004320 vs. TAIR 10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 9.7e-28
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 37  MFLLVMTSLAEQSKGETCSFTFFSSLVRLIPCRPSVAPFRPIPPTVACCNAVKSLGQPCL 96
           + ++V + L  ++ G  C  TF S+L++L+PCRPSVAPF  +PP   CC A+K+LGQPCL
Sbjct: 15  LMVMVQSGLVRETLGHPCGRTFLSALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPCL 74

Query: 97  CVLVNGPPIAGVDRDLAMLLPEKCTANFDPC 128
           CVL  GPPI GVDR LA+ LP KC+ANF PC
Sbjct: 75  CVLAKGPPIVGVDRTLALHLPGKCSANFLPC 105

The following BLAST results are available for this feature:

BLAST of Lcy02g004320 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g004320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCG0	1.4e-50	89.72	protein LIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111452716 PE=4 SV=1	[more]
A0A6J1KEI1	3.1e-50	89.72	protein LIM3-like OS=Cucurbita maxima OX=3661 GN=LOC111493120 PE=4 SV=1	[more]
A0A6J1DFH7	2.9e-48	87.85	protein LIM3 OS=Momordica charantia OX=3673 GN=LOC111020340 PE=4 SV=1	[more]
A0A1S3CFZ5	8.6e-48	81.65	protein LIM3 OS=Cucumis melo OX=3656 GN=LOC103500304 PE=4 SV=1	[more]
A0A6P5ZVI2	9.8e-36	67.29	protein M7 OS=Durio zibethinus OX=66656 GN=LOC111304477 PE=4 SV=1	[more]

BLAST of Lcy02g004320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903285.1	2.9e-50	91.59	protein LIM3 [Benincasa hispida]	[more]
XP_022949330.1	2.9e-50	89.72	protein LIM1-like [Cucurbita moschata]	[more]
KAG7036573.1	3.8e-50	89.72	hypothetical protein SDJN02_00192, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022998504.1	6.5e-50	89.72	protein LIM3-like [Cucurbita maxima]	[more]
XP_023524609.1	1.1e-49	87.85	protein LIM1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy02g004320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52130.1	5.7e-28	64.94	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G07450.1	9.7e-28	57.14	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 57..127 e-value: 7.2E-12 score: 47.0
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 62..128
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 47..126 e-value: 5.7E-8 score: 32.8
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	LIPID BINDING PROTEIN-RELATED	coord: 29..130
None	No IPR available	PANTHER	PTHR33122:SF33	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 29..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g004320.1	Lcy02g004320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
molecular_function	GO:0005504	fatty acid binding