Lcy02g003990 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g003990
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribosomal protein
Location	Chr02: 5275896 .. 5279546 (+)
RNA-Seq Expression	Lcy02g003990
Synteny	Lcy02g003990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGACCACAAAAATCCCAAAATCCAACCAAAAAAAAAAAAAAATGTCCTCATTTGTATTTCTTATCATCTCCACATTCTATGGATAGAGAAACCCATTTCCAAATCCAAATCCAAAACCCCCACTTCATGAGGTAGAAGAAGAACCTCGCAATTCCACTCTCCATCAATGGCGGCCTGTACTTCCACTTCTCCTTCTTCCCTTATGCTCACATCCGCTTCTTCTTCTGTCCACCCTCAAGACCTCGCTTCCTCCATCGTTTCTTTCAAGGGGAAGCCCCAATTCTCCACCATCAAATCCTTCTCCTCCTGCCATTTCCTCTGCAAGCCAAGCAGATCGGTCGATTGGGTCTTCCTTAATTTTCAGAGACGAGCCAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGGATGTTGCCGAGGCGGAGGCCGAGGAAGAGGAGGGGGTCGGCGGGGTGGCGACGGCTACCGTCGCTGCGCCTAAACCCAAGAAGGGTAAAGCCGCGTTGCCCCTTAAAAGAGATAGGGTATGCTCCAAAACCTTTTAATGTTTTGGTTTGGATTATGGGTTTTGTTTTGAGGGGCTTGTTTTCAAGGTTGGGAATGGAGGGTATTTCTTTTCTGGTTGTTGTTGAAATGGTTGTGGTGGAGTTTTGATTGGTGGATTGATCATTGAATGTCAATCTCAATGTGTACTAGTTTAGGCCTGAAGTTTAAAGTTGGCTTCTGTTTGCATGGCTTGTGCTTGAGGAGCTTGGTTTTCATGTTTAGAAATAGTGGATGTTTCCCTTTAGGTTGTTTTATTATGGTTGTGGTGGACTTTTGGGTATGTTGATATGTGTACTAGTGTAAGCCTGAAGTTTAAACTTGGCTTCATTTTCTCTGTCTTTCCCCATATCCTTATTTCATGATTGATGTCTGAATTCAATTTGTTGTGTATTATGTCAGAGGAGATCCAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACATCAAGACAGCAATATCTCTGCTCAAGGAAATGGCTAGCACAAAGTTTGTGGAAACAGCTGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTGAGTTTTGTTTTGTAAATCATATTGTTGAGGGAAGTTACAAGGAATATGCATATCACGAGGTTACTCTGTCTGAATGCTTTGATGCAGGTTAATCTGCCTAAAGGAACTGGACAAACAGTCAGAGTTGCTGTTCTTACTCAAGGTAACTACTTTTAATACTTAAGCAGCTCTCTCATCAACTTTGATACACAATGGGCTGTAACAGTGTTTCTTATGCTATATGATCACGAATTCTTTCTAGATCCACAAAGTTGAGTCTTTGTATAAGGGCATGAGAATGGTTTTAGTTTTATCATTTATGTTACTTAAAAGTTTTTCCTTGTTTGCATTTACTATATTTTCATGGATGACTTTGACTTGATTGTTTAAAAAAAATGAAGTCATTCTTCTCTTTGAAGTAAGATGTTTCTGAATAATAACTTTAATATGCACGATAATACTAATCTTTACAAGCCGTCTGATCATAGTTCTTCAACCCTAAACTATCTTGATTCGAAATAAGAAACTTTCTGGAGTCATCTTCATGTTGAACTCTATGCTAAGTTTCGTAGTAGAGATTCTACCATAATTTGAAGTTTTCACAATCTAGCCGAGGTCCATATCTAGAATAGGGTTAGTCCAGTCATGGTGCTTCGGCTCTTGGTCGAACCAAATAGTAGGTTTTTATGCATCTAGGTTAATTCTTCTTGAATGGTTGCTTGTTAAAATAACTTTACTGTTTAGGGTGCAATTCTGAAAAGCTGAAATAAATATACAGGTGAGAGATTCGACGAAGCAAAAAATGCTGGAGCAGATTTAGTTGGTGGGGAGGACTTGATAGAACAGATAAAAGGAGGATTTATGGATTTCGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTATTGTTCTGACTACACTACTTCAATCATTCATTCATTTATTTTTTGATATTTTTGTAATTTTCACTACATATAAATTGTTATCCTAAAAAAGTTGCATAACTTACAAAAAAAGAAAAAAGTTTTCCTTAACAAGTTGCATAGCTTTAAAAGTTTAATTATAGATGATCCTGTTTATGTAATGTAAAAAGAAAATGAGAGACTTCTCAAAGAAAAAAAAAACAAAAAGCAAATGAGAGACATGAACATCGACTTAGTAATTACCCTGGGTTTATAGATCCATTTTTGGTCATAGATATACTTCCTAGACTTTGTTGATCAAAGTGCTTGCCTTATGGCTGAAGCCAAATTTGAATCATTTTCTAAAATTTTCAAGAAGTCTCTGTATACGTGTTTTCTGGCCTTGTCGATTTATCATCGGGTGAAACGCCAATTACCTGCATTACTATAATGATATTGTTGATTTCCATATTTGAGTCTTCTATGGTCGTTTCAGGTTGCTAGCCTTGGGAAGCTCCTTGGACCACGTGGACTCATGCCAAATCCAAAAGCCGGTACCGTGGCAACCAATTTACCTCAGGTATTAATAGTCTTCTTTTGGCACCTTTAGTGCATCCAGATTTCCTGTCCATCCACTAGAAAATAAATTTAAGACTTTATATAAAGCATCGGGCAACCTTGATTTCAGGCAATAGCAGAATTCAAGCAGGGAAAAGTTGAATACAGAGCAGATAAAACCGGGATAGTTCACTTACCGTTTGGAAAAGCTGACTTCAGTGAAGAAGACCTTCTCATAAACTTGCTTGCTGCCATAGTATGTTCTTCCCTTCTTCTCTCTGCAGCTGTTAGTCTCTGGAAACACGTTTTGCTCATTTCGATAAGTCATTTTCTTCTAACCATGACAGAAATCAGTTGAAACCAATAAGCCAACAGGTGCAAAAGGTGTATACTGGAAGAGTGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGAGAGATGCTGGACTTCAAGCTTCCCTCGAGCGCTTGACGAATAACAAACCTGTAAATTTCTTCTGTTTGTTGAATCAGCCTCTGGGGGGAATCCACTGGAATATAATGCCCAAATGTGAGCAGCATTGGAGAAAGTGAAGGTGATAGAAGAAACTAGGATGAAGAGTGAGGAGACATCAGATAATTATGATTACACAGAAACAAGCATACTGCAAGTCTTCTATACTGACTCAGTCACTTTGTATTAATGGTGTTAAGTTCTTGTTGATCTAATACACTTTGATTGACCTCTTGGGTTTTAAGAGAAAAAAATGATGAATGTACTGAAATGTATTAACCAGTTGCTGCCCTTTTCTGTGGGCCATTTCGAAAGTGGTTGTTCGTGTTGGTTCGTCGTAAAGGGGCGTATCGTACAGTTCAATTACTTTAAGTTTCACCATTTCCATTTCTATGCCTAGGAGGATATTTTGATATGCAAATATGGATGATAGATGTATCAAGATCCAGAATTGTATTCATGTTTAGGATTTTTTTAATTTGTAAATATGTACTCATAGCTCTTTTTTAGCAACCATATTCTCAAGCTTCTCATTCTAATATCTCAAAATAACACATGAAACTCTTT

mRNA sequence

AATGACCACAAAAATCCCAAAATCCAACCAAAAAAAAAAAAAAATGTCCTCATTTGTATTTCTTATCATCTCCACATTCTATGGATAGAGAAACCCATTTCCAAATCCAAATCCAAAACCCCCACTTCATGAGGTAGAAGAAGAACCTCGCAATTCCACTCTCCATCAATGGCGGCCTGTACTTCCACTTCTCCTTCTTCCCTTATGCTCACATCCGCTTCTTCTTCTGTCCACCCTCAAGACCTCGCTTCCTCCATCGTTTCTTTCAAGGGGAAGCCCCAATTCTCCACCATCAAATCCTTCTCCTCCTGCCATTTCCTCTGCAAGCCAAGCAGATCGGTCGATTGGGTCTTCCTTAATTTTCAGAGACGAGCCAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGGATGTTGCCGAGGCGGAGGCCGAGGAAGAGGAGGGGGTCGGCGGGGTGGCGACGGCTACCGTCGCTGCGCCTAAACCCAAGAAGGGTAAAGCCGCGTTGCCCCTTAAAAGAGATAGGAGGAGATCCAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACATCAAGACAGCAATATCTCTGCTCAAGGAAATGGCTAGCACAAAGTTTGTGGAAACAGCTGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTTAATCTGCCTAAAGGAACTGGACAAACAGTCAGAGTTGCTGTTCTTACTCAAGGTGAGAGATTCGACGAAGCAAAAAATGCTGGAGCAGATTTAGTTGGTGGGGAGGACTTGATAGAACAGATAAAAGGAGGATTTATGGATTTCGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTTGGACCACGTGGACTCATGCCAAATCCAAAAGCCGGTACCGTGGCAACCAATTTACCTCAGGCAATAGCAGAATTCAAGCAGGGAAAAGTTGAATACAGAGCAGATAAAACCGGGATAGTTCACTTACCGTTTGGAAAAGCTGACTTCAGTGAAGAAGACCTTCTCATAAACTTGCTTGCTGCCATAAAATCAGTTGAAACCAATAAGCCAACAGGTGCAAAAGGTGTATACTGGAAGAGTGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGAGAGATGCTGGACTTCAAGCTTCCCTCGAGCGCTTGACGAATAACAAACCTGTAAATTTCTTCTGTTTGTTGAATCAGCCTCTGGGGGGAATCCACTGGAATATAATGCCCAAATGTGAGCAGCATTGGAGAAAGTGAAGGTGATAGAAGAAACTAGGATGAAGAGTGAGGAGACATCAGATAATTATGATTACACAGAAACAAGCATACTGCAAGTCTTCTATACTGACTCAGTCACTTTGTATTAATGGTGTTAAGTTCTTGTTGATCTAATACACTTTGATTGACCTCTTGGGTTTTAAGAGAAAAAAATGATGAATGTACTGAAATGTATTAACCAGTTGCTGCCCTTTTCTGTGGGCCATTTCGAAAGTGGTTGTTCGTGTTGGTTCGTCGTAAAGGGGCGTATCGTACAGTTCAATTACTTTAAGTTTCACCATTTCCATTTCTATGCCTAGGAGGATATTTTGATATGCAAATATGGATGATAGATGTATCAAGATCCAGAATTGTATTCATGTTTAGGATTTTTTTAATTTGTAAATATGTACTCATAGCTCTTTTTTAGCAACCATATTCTCAAGCTTCTCATTCTAATATCTCAAAATAACACATGAAACTCTTT

Coding sequence (CDS)

ATGGCGGCCTGTACTTCCACTTCTCCTTCTTCCCTTATGCTCACATCCGCTTCTTCTTCTGTCCACCCTCAAGACCTCGCTTCCTCCATCGTTTCTTTCAAGGGGAAGCCCCAATTCTCCACCATCAAATCCTTCTCCTCCTGCCATTTCCTCTGCAAGCCAAGCAGATCGGTCGATTGGGTCTTCCTTAATTTTCAGAGACGAGCCAGGCACCATGTGATCGTCGCTGCTCTCGCCGCCGAAGCGGATGTTGCCGAGGCGGAGGCCGAGGAAGAGGAGGGGGTCGGCGGGGTGGCGACGGCTACCGTCGCTGCGCCTAAACCCAAGAAGGGTAAAGCCGCGTTGCCCCTTAAAAGAGATAGGAGGAGATCCAAGAGATTCTTGGAAATTCAAAAACTGAGGGAAAACAAAAAAGAGTATGACATCAAGACAGCAATATCTCTGCTCAAGGAAATGGCTAGCACAAAGTTTGTGGAAACAGCTGAAGCCCATTTCCGGCTCAACATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTTAATCTGCCTAAAGGAACTGGACAAACAGTCAGAGTTGCTGTTCTTACTCAAGGTGAGAGATTCGACGAAGCAAAAAATGCTGGAGCAGATTTAGTTGGTGGGGAGGACTTGATAGAACAGATAAAAGGAGGATTTATGGATTTCGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCTAGCCTTGGGAAGCTCCTTGGACCACGTGGACTCATGCCAAATCCAAAAGCCGGTACCGTGGCAACCAATTTACCTCAGGCAATAGCAGAATTCAAGCAGGGAAAAGTTGAATACAGAGCAGATAAAACCGGGATAGTTCACTTACCGTTTGGAAAAGCTGACTTCAGTGAAGAAGACCTTCTCATAAACTTGCTTGCTGCCATAAAATCAGTTGAAACCAATAAGCCAACAGGTGCAAAAGGTGTATACTGGAAGAGTGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGAGAGATGCTGGACTTCAAGCTTCCCTCGAGCGCTTGA

Protein sequence

MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDWVFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRDRRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA

Homology

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BLAST of Lcy02g003990 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 9.5e-123
Identity = 243/356 (68.26%), Postives = 280/356 (78.65%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +       L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
                 R + H  IV+A+AAEAD+     + EE +   ATA +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEYD+ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGE+ DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
            KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFT 300

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 357
           EEDLLIN LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK P++
Sbjct: 301 EEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTA 345

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BLAST of Lcy02g003990 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 2.6e-120
Identity = 244/357 (68.35%), Postives = 284/357 (79.55%), Query Frame = 0


Query: 6   STSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHF-LCKPSRS-VDWVFL 65
           + +P SL L  ASSS   Q   S    FK       + + S C   L +  RS + WV  
Sbjct: 3   TAAPPSLSLCYASSSFQYQQDPSFQTHFK-----PLLLNSSLCRLTLNQRERSCLKWVDF 62

Query: 66  NFQRRARHHV---IVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 125
             Q+++   V   ++AA+AAEA+VA+ E EE E  GGVAT   +  KPKKGKAALPLK D
Sbjct: 63  TSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGES-GGVATLP-SPTKPKKGKAALPLKSD 122

Query: 126 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 185
           R RSKRFLEIQKLRE K+EYD+KTA+SL+K+M+STKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 123 RTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRA 182

Query: 186 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 245
           TV+LPKGTG+TV++AVL QG++ DEAK AGAD+VGGE+LIEQIKGGFMDFDKLIA+ DMM
Sbjct: 183 TVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMM 242

Query: 246 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 305
            KVASLG++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F 
Sbjct: 243 AKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFE 302

Query: 306 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           EEDLLINL A IKSVETNKPTGAKGVYWKSAHI SSMGPSIRLNIREMLD+K PS+A
Sbjct: 303 EEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

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BLAST of Lcy02g003990 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 9.4e-78
Identity = 146/233 (62.66%), Postives = 186/233 (79.83%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  + Q   EN K Y+   A++LLKE+A+ KF ETAEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTG+TVRVAV+T+GE+  EA NAGAD+VG E+LIE+I  G MDF+ LIA+PDMM
Sbjct: 63  TVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVA LG+ LGPRGLMP+PK GTV T+L  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFS 182

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL 354
            EDLL+NL A  ++V+ N+P+GAKG YW++ ++ SSMGPSI+++I  + D KL
Sbjct: 183 AEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

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BLAST of Lcy02g003990 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 8.8e-76
Identity = 141/237 (59.49%), Postives = 186/237 (78.48%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  E+Q   E+ +EY    A+SLLKE A+ KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV LPKGTGQ VRVAV+ +GE+  EA NAGAD+ G E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           P+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFS 182

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
            EDLL+NL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 183 PEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of Lcy02g003990 vs. ExPASy Swiss-Prot
Match: Q8YLJ7 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplA PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.0e-75
Identity = 141/237 (59.49%), Postives = 186/237 (78.48%), Query Frame = 0


Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           ++ S+R  E+Q   E+ +EY    A+ LLKE A+ KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRT 62

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV LPKGTGQ VRVAV+ +GE+  EA NAGAD+VG E+LI++I+ G MDFDKLIA+PD+M
Sbjct: 63  TVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVM 122

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           P+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA FS
Sbjct: 123 PQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFS 182

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
            EDLL+NL A  ++++ N+P+GAKG YW++ ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 183 PEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of Lcy02g003990 vs. ExPASy TrEMBL
Match: A0A6J1G9U2 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1)

HSP 1 Score: 642.1 bits (1655), Expect = 1.4e-180
Identity = 335/357 (93.84%), Postives = 344/357 (96.36%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAACTSTSPSSLMLT ASSSV+PQDL SSIVSF GK +FSTIKSFSSCHFLC+P RS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
           + LNFQRRARHHVIVAALAAEA+VAEAEAE EEGV    T TVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEY+IKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           EEDLL+NLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of Lcy02g003990 vs. ExPASy TrEMBL
Match: A0A6J1KEE5 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111493089 PE=3 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 4.0e-180
Identity = 335/357 (93.84%), Postives = 344/357 (96.36%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAACTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIKSFSSCHFLC+P RS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
           + LNFQRRARHHVIVAALAAEA+VAEAEAE EEGV    T TVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEY+IKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           EEDLL+NLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL S+A
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

[Close]

BLAST of Lcy02g003990 vs. ExPASy TrEMBL
Match: A0A6J1DFM3 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1)

HSP 1 Score: 637.9 bits (1644), Expect = 2.6e-179
Identity = 336/361 (93.07%), Postives = 345/361 (95.57%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MA CTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIK+FSS HFLC+P RS DW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  VFLNFQRRARHHVIVAALAAE----ADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALP 120
           +FL+FQRRARHHVIVAALAAE        EAEA+EEEG+ G A ATVAAPKPKKGKAALP
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLDG-AAATVAAPKPKKGKAALP 120

Query: 121 LKRDRRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180
           LKRDRRRSKRFLEIQKLRENKKEYD+KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ
Sbjct: 121 LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180

Query: 181 QLRATVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240
           QLRATVNLPKGTGQTVRVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS
Sbjct: 181 QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240

Query: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300
           PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK
Sbjct: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300

Query: 301 ADFSEEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 358
           ADFSEEDLLINLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKLPSS
Sbjct: 301 ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 360

[Close]

BLAST of Lcy02g003990 vs. ExPASy TrEMBL
Match: A0A5D3BLK6 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00110 PE=3 SV=1)

HSP 1 Score: 619.8 bits (1597), Expect = 7.2e-174
Identity = 329/358 (91.90%), Postives = 340/358 (94.97%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIKSFSS +FLC+  RS D
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKR 120
           WVFLNFQRRAR HVIVAALAAEA+VAE EAEEEE V   ATAT  APKPKKGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEYD+ TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300

Query: 301 SEEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           SEEDLLINLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Lcy02g003990 vs. ExPASy TrEMBL
Match: A0A1S3CFH3 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1)

HSP 1 Score: 619.8 bits (1597), Expect = 7.2e-174
Identity = 329/358 (91.90%), Postives = 340/358 (94.97%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIKSFSS +FLC+  RS D
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WVFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKR 120
           WVFLNFQRRAR HVIVAALAAEA+VAE EAEEEE V   ATAT  APKPKKGKAALPLKR
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAEEEEAVAAAATAT--APKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEYD+ TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240
           ATVNLPKGTGQTV+VAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM
Sbjct: 181 ATVNLPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 240

Query: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 300
           MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA+F
Sbjct: 241 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANF 300

Query: 301 SEEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           SEEDLLINLLAAIKS+ETNKP+GAKGVYWKSAHICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 301 SEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of Lcy02g003990 vs. NCBI nr
Match: XP_022948661.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 642.1 bits (1655), Expect = 2.8e-180
Identity = 335/357 (93.84%), Postives = 344/357 (96.36%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAACTSTSPSSLMLT ASSSV+PQDL SSIVSF GK +FSTIKSFSSCHFLC+P RS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
           + LNFQRRARHHVIVAALAAEA+VAEAEAE EEGV    T TVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEY+IKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           EEDLL+NLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of Lcy02g003990 vs. NCBI nr
Match: XP_022998464.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 640.6 bits (1651), Expect = 8.2e-180
Identity = 335/357 (93.84%), Postives = 344/357 (96.36%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAACTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIKSFSSCHFLC+P RS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
           + LNFQRRARHHVIVAALAAEA+VAEAEAE EEGV    T TVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEY+IKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           EEDLL+NLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKL S+A
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

[Close]

BLAST of Lcy02g003990 vs. NCBI nr
Match: KAG7036595.1 (50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 639.8 bits (1649), Expect = 1.4e-179
Identity = 334/357 (93.56%), Postives = 344/357 (96.36%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAACTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIKSFSSCH LC+P RS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
           + LNFQRRARHHVIVAALAAEA+VAEAEAE EEGV    T TVAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAVGGTDTVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEY+IKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           EEDLL+NLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of Lcy02g003990 vs. NCBI nr
Match: XP_022152718.1 (LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 637.9 bits (1644), Expect = 5.3e-179
Identity = 336/361 (93.07%), Postives = 345/361 (95.57%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MA CTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIK+FSS HFLC+P RS DW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  VFLNFQRRARHHVIVAALAAE----ADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALP 120
           +FL+FQRRARHHVIVAALAAE        EAEA+EEEG+ G A ATVAAPKPKKGKAALP
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLDG-AAATVAAPKPKKGKAALP 120

Query: 121 LKRDRRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180
           LKRDRRRSKRFLEIQKLRENKKEYD+KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ
Sbjct: 121 LKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQ 180

Query: 181 QLRATVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240
           QLRATVNLPKGTGQTVRVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS
Sbjct: 181 QLRATVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240

Query: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300
           PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK
Sbjct: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300

Query: 301 ADFSEEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 358
           ADFSEEDLLINLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKLPSS
Sbjct: 301 ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 360

[Close]

BLAST of Lcy02g003990 vs. NCBI nr
Match: XP_023525415.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 637.5 bits (1643), Expect = 6.9e-179
Identity = 332/357 (93.00%), Postives = 343/357 (96.08%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAACTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIKSFSSCHFLC+P RS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
           + LNFQRRARHHVIVAALAAEA+VAEA+ E EEGV    T  VAAPKPKKGKAALPLKRD
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEADTEAEEGVAVGGTDAVAAPKPKKGKAALPLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           RRRSKRFLEIQKLRENKKEY+IKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 121 RRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TVNLPKGTGQTVRVAVLTQGE+FDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVNLPKGTGQTVRVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
           PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS
Sbjct: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 358
           EEDLL+NLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 301 EEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of Lcy02g003990 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 441.4 bits (1134), Expect = 6.8e-124
Identity = 243/356 (68.26%), Postives = 280/356 (78.65%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +       L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
                 R + H  IV+A+AAEAD+     + EE +   ATA +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEYD+ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGE+ DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFS 300
            KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +F+
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFT 300

Query: 301 EEDLLINLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSS 357
           EEDLLIN LAA+KSVETNKP GAKGVYWKSAHICSSMGPSI+LNIREM+DFK P++
Sbjct: 301 EEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of Lcy02g003990 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 297.0 bits (759), Expect = 2.1e-80
Identity = 178/296 (60.14%), Postives = 210/296 (70.95%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKSFSSCHFLCKPSRSVDW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +       L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  VFLNFQRRARHHVIVAALAAEADVAEAEAEEEEGVGGVATATVAAPKPKKGKAALPLKRD 120
                 R + H  IV+A+AAEAD+     + EE +   ATA +  PKPKKGKAAL LKRD
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL-----DTEEDLEQTATAVLDPPKPKKGKAALVLKRD 120

Query: 121 RRRSKRFLEIQKLRENKKEYDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 180
           R RSKRFLEIQKLRE KKEYD+ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLRA
Sbjct: 121 RTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRA 180

Query: 181 TVNLPKGTGQTVRVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMM 240
           TV+LPKGTGQTV VAVL QGE+ DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPDMM
Sbjct: 181 TVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMM 240

Query: 241 PKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 297
            KVA LGK+LGPRGLMPNPKAGTV  N+PQ+    ++GK+     K G+     GK
Sbjct: 241 VKVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]

BLAST of Lcy02g003990 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 162.5 bits (410), Expect = 6.1e-40
Identity = 90/224 (40.18%), Postives = 137/224 (61.16%), Query Frame = 0


Query: 132 KLRENKKE-YDIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 191
           +L+  KK  +D+  AI  +K  A  KF ET EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 192 TVRVAVLTQGERFDEAKNAGADLVGGEDLIEQI-KGGFMDFDKLIASPDMMPKVASLGKL 251
            V+VA   +G   ++AK AGAD+VGG +LIE+I K G +DFD+ +A+P MMP+V  + ++
Sbjct: 239 DVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRI 298

Query: 252 LGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLL 311
           L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK  FSEE L  N+ 
Sbjct: 299 LNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVG 358

Query: 312 AAIKSVETNKPTGAKGV-----YWKSAHICSSMGPSIRLNIREM 349
           A + ++   KP G K       Y  + H+CS+MG    ++I+ +
Sbjct: 359 AFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of Lcy02g003990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LY66	9.5e-123	68.26	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
Q9LE95	2.6e-120	68.35	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
B0JNQ5	9.4e-78	62.66	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
Q3MA18	8.8e-76	59.49	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
Q8YLJ7	2.0e-75	59.49	50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]

BLAST of Lcy02g003990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9U2	1.4e-180	93.84	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1	[more]
A0A6J1KEE5	4.0e-180	93.84	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111493089 PE=3 SV=1	[more]
A0A6J1DFM3	2.6e-179	93.07	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1	[more]
A0A5D3BLK6	7.2e-174	91.90	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00...	[more]
A0A1S3CFH3	7.2e-174	91.90	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500332 PE=3 SV=1	[more]

BLAST of Lcy02g003990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948661.1	2.8e-180	93.84	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022998464.1	8.2e-180	93.84	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]
KAG7036595.1	1.4e-179	93.56	50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022152718.1	5.3e-179	93.07	LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica cha...	[more]
XP_023525415.1	6.9e-179	93.00	50S ribosomal protein L1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy02g003990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	6.8e-124	68.26	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	2.1e-80	60.14	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	6.1e-40	40.18	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..95
None	No IPR available	GENE3D	3.30.190.20		coord: 140..343 e-value: 6.2E-82 score: 276.1
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 137..350
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 137..350
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 149..339 e-value: 1.3E-46 score: 158.9
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 142..343 e-value: 3.43853E-73 score: 223.985
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 187..278 e-value: 6.2E-82 score: 276.1
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 123..347 e-value: 1.3E-94 score: 313.8
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 121..348 score: 39.668339
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 240..258
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 126..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g003990.1	Lcy02g003990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding