Lcy02g003980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g003980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein RETICULATA-RELATED 4, chloroplastic-like
Location	Chr02: 5239699 .. 5250094 (-)
RNA-Seq Expression	Lcy02g003980
Synteny	Lcy02g003980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAACAATGATAGTGTAAGGCCTAGAATACGAATCTGGATTTGACACCTAATAGGCTTCGGCATTTTCCTGTATCACGTGCAACCTAGCCACGTTACCATACTTTTATGTCTTCGGAATTCCTCGGATGTGGTCTCAGTTCATTCATGGGTAGAGTGAAGATCAAATCATCGATCTTTTGAAGACGATAAATTGTGATAATAAAATTCACCAAGCTATGTTCGAATCCACGGAAATACCTTAACCACTAAACTATAGTCACATCCGCCACGAAGACTTTACATTTCAGCAGCTTTTCAATCTCTGTTGATATTTCAGCACTTTCTCAGCCACAACTAACAGAGAGGCTTCCATATCCCAATCTCTCTTTTTCTCTCTGTCTCTCTCTCTCTCTCTGAAGATTCTCCGGCAAAAAAAAAAATGGCGATCCGAAATTTCACAAATCTCTCCGTACCGCCGCCGTTCCTCCGCCGCTCATCTCCACACAATTTCACTTACATTCTCACCTGCCGCACTCGCACCGCTCCCTCTCTCCGCCTCCACTCCCTCTCCACCGCGAACTCTCCCCGTCGACGCCGCCGCAGCCACGGAATCTCCGCCGCATTCGCCTCTTCCGACGGAATTCCCCCCGGAGGCCACGGAGGAGGAGGCGGCGGCGGCGGAGACGGACATGGAGAGGGCGAGGAGGAGGAGGATCGGGAGAAGAATAAGGCGGAGGCGATTCTGGTGCTGGCGAAGGCCGGGAGGTCGACGGAGAGCCTGCCGAAGGATCTGGCGGCGGCGATTGCGGCGGGGAGAGTGCCGGCGGTGATCGTGGAGAGGTTTCTGGAGTTGGAGAAATCGGCGGCGTGGCGGTGGCTGCTGCAGTTCGGGGGATTTAAAGAACGGGTTCTGGCGGACGACTTGTTCTTGGCTAAGGTCGCCATGGAATGTGGCGTTGGAATTTTCACAAAGGTCTTTATCTCTTTTCCTTTTCAAATGCCTTCGCTTACCTTACTTTGTTTAATTATAATTTATCCATGGTAGCCTTTTCAATTTGGTTCTCGTGGTTTGGATTTAATCTCGGTTCGGTTCTTGCACTTTTACAAGTTTTAATTTAATTTACATAATTTAATTAAATCTTTTTTAATATAGCTATACCTAAAGTGTACGTAGGATTCAAACCTTTAACCAGATTATGAAGTCGGAAATATTTAATTTAACTAAACTATGCTGAGGTTGTCAGGTTGACGATTAAATCTCTTTGGCTAGCACATAGTTAAAGAAATTGGAGACACGAGCATATTATCATGGGAAGAAAAAATAATAATATAGCACGTATTAATCTAATAATTATAGAGTGACTTGTGAGGTTTGAGTAAACTATAAGAACTGAATTAGAAAATATATTAACTCATTGAAATTAACTTCATCATTACTATTAGTAAATGTGAAAAGAATTAGGATGTGATTTTTTAATTATATTTTAAATCGAGGTGCAGGATAGGTTATAACAAATTAATCAACCTTACTCGAGTATAGTTTAAATAGCCACACATTAGCTAGTACTTTCTTTGTAGGAATAAGTTTGATTCTTTGTGTTAAAGTGAGCATAGTTCAGTAGTAATTGACATGTATCATCAGTCAAGAGATCAGAGGCATTTGAATCCCCCACCCTCAACTGTTGTTGTGAACTACTAAAAAAAAAGTTTGAATCTTTGTGTCAAAAGTGAGCTTATGTCAACGGTAATTGATATGTATCTGACTACCACCTTCAAACATTATTGAATCTTTGCTTCATGTTTGTGGTAATAATTTTTAAAAAATTATTGAATGAAAAATATGTATTACTTTCATTTCAAATCATCAATTATGTACTTGACTTAATTAGCCAATATTTTTTTTTAAACACTTAATTAGCCAATATTAACCTTAACTCTTAGCTTCATTAAATTTAATTCTAAACTTAAACTTTATGACATAGTGAAATTAATGTAATTGCTTTATGACATAGTGAAATTAATATCCGCAATTACAAGTTTTTTTTTTTACTAATTTTAAGTATTTTGTAACTAGACAAAATACTTTTAGAGGATGCTTTGGCGTTATTTTAATTTAATTGAATTTGGAATATTTTGTTGCAAATTGTGCATCTAGCACATCTATTTTTACTTGATTTTGATTGAATTATATATGATTTATTATTTGGTTCATGATTTTTTTAATTTGTTTTTAAAGAAGTATTAATTTCTATTTATAAATTTTTAATATCTCAAAACTAACATGGTTGTCTTTTTTTTCTACTTCAAGACTGCGGCTGAGTTGGAGAAACGCAAGGAAAACTTTAGCAAGGAGCTGGATTTTGTTTGTGCTGACGTGGTATGTGCTTTCATTTAAACCTTCAAACTCAAATTATTATTGTTTTTTTTTTTTGCTAAATTATAAAAAAAATACTCATGAACTATGAGATTTGTTTCAAAAATGCCCCTGAACTTTGAAAAGTTTCAAAAATACCCCTGAACCTTGAAAAATGTTTCAAAAATACCATTGTCGTTAATTTTTGGATGGAAACCGTTAAAGTTTCAGTTCCAAAAAATCTCCATGAACTTTCAAAAAATAATTATTGAAAAATGTTTCTTCTTTTTTCTTTCTCTCACCGTAAATTCTTGCATTAATTTTCATGGAGAAAGAATTTACGATGAGAGGAAGAAAAAATAAGAAGCATTTTTTAATAAGGGTATTTTTAAAAATTTTTTGAAAGTTCGAGGGTATTTTTTAAAACTAAAACTTTAACGGTTTCCATCCAAAAATTAATGGCAGGGGTATTTTTTAAACCTTTTTCAAAGTTCAGGGGTATCTTTGAAACTTTTCAAATTTTAGGGGCATTTTTTAAACAAACCCCATAGTTCAGGGGTATTTTTTATAATTTAGCCTTGGTAAAAAAAAAAACATTTTTCTTTTTCTTTTAGTTACCAATTTTTATATTGTTTTATTTCTTAAGCATGCAATTTTAAATCTATATCAACGATTTTGTTCTTACTACTAAAAGAGAAAATAAATAATAGCAAACAACTTTGTTATTTTTGACAAAGAAATAAAAAGTTGCCTTTTTGGGGGATAAAGAAAAGGTCATATCCCACAACATGTTTTGTTTTCTAATTTGTATAGTAATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTGACAACTAATTTTTATAATAATATTAGTTCTAAAAAACAAATATATAAAAAGATATAAAGTGATATAACTACACTCATTTATTTTTTTATATAAATAAAATTAAACCTATATATGAAAAACAAAATTTGATTTGATATTGATTTCAATTTAACTTTATAATTCTCGTGAAACGATTACTTGAGAAACGAAGAGATTACTGGTCATTTTCTCCAAAGTTTCTCTCTATATATTTTGAAAGACCAAATTTTCTAAAATAATTTTAAAAATATGTATTTCCATTATAAAAAATTGAAAAAAAAAGAATTACGAAAATAAAAAAGAAAAATAATATTTGATGGATGATTAACTTTAATAATAGCCATCAATTTTATTTTACTAAAAAACAATCTATTTTTATGTAATAAATCATGATCATTGAATTGAATTGATAAACTATAATGTCTTTCACAAAAAAAAAAAAAGAATTGATAAACTATAATAATAATATTGATTAACCCATACATTGTTAACTATAGTCATATTACTTTGTGCCAAAAAAACTACTATCATATTTGATAATGTTTCGATTCATCTACTTTTTAAAACATGCGCACTTTCTAATATTTCTTGATTTTTTTTTAATAAATTACATTTCAAAACTACTATCATATTTGATAATGTTTCGATTCATCTACTTTTTAAAACATGCGCACTTTCTAATATTTCTTGATTTTTTTTTAATAAATTACATTTCAAAACTACTATCATATTTGATAATGTTTCGATTCATCTACTTTTTAAAACATGGGCACTTTCTAATATTTCTTGATTTTTTTTTAATAAATTACATTTCAAAACTACTATCATATTTGATAATGTTTCGATTCATCTACTTTTTAAAACATGCGCACTTTCTAATATTTCTTGATTTTTTTTAATAAATTACATTTCCTATATCTTGATTCCAAAGAACATTTTTATAATTATACACCATTTGAAAATTCATTTAAAATATTCAAAAATTCATATATATATTTATATTGTTTCAAAATTTCAATAAGACATTTTCTGTTGAGTTATTTTTGTTGTTTCGTTTTTTTTGTTTGTGTTTGCTTTGATTTTTCTTTGTGTCTTGAATTGGAACTTTGAGATAACTTTGTTGTTTTGAAATATATTATCTTTGAAAAACAAAATCAAAAGATACCAATTAAAGCGTTTTTTTTTTTTTTAGAATAAATTTCATGATAAGTATCAAAAATTAAAATCAGATAACAATTCTAAACGTTTATATTGAAAAATAATTTTCAAGTAATTTTGCAATTCAAGAATTTTTCTTTTCCTTTCTGGGACCAAGTTTGTTTGTTTGTTTTTTTATCTTAAATGAAACACAGATAATGGCCATTATAGCAGATTTCATGCTTGTTTGGCTTCCTGCTCCCACCGTCTCTCTCAAACCTCCTCTAGCAATCAGTGCTGGACCTCTCACCAAGTTCTTCTATGGCTGCCCTGAAAACGCCTTCCAGGTAATTATCCCCTGAAACCCAAACAACCCATCAATTTTTTCACTTGTATACAACATTCTACTGCCTCAATATGAACACCCATGTCAAGATTTTTCATTATTTCGATTCCCCATATGGGCATTTTTGTCTCTGAGTTCTCAAGCATCCAAATGAACACCAGCTGTTCGATAAAATTCCCAACTGAAATTCCTGTTCTGCAGGTGGCTTTGGCGGGTACTTCGTTTTCACTTCTTCAGAGAGTTGGCGCAGTGGTGGTATGTGGTCTGTTTTTGAGCTGAATTTATTGATTGATTTGGATTATTTTGGCACTTAATGTGAATACATATGTTAATATGCAGCGTAATGGGGCCAAGCTATTTGCTGTAGGGAGTAGTGCATCTGTGGTAAGCCACTTGTTTCCCTGCTTTGTTCTACCACTGGCTTGTTTTGATTTTTTAAGTTGTTATTTTGCCTCCTAAATATATGTATCACTGTCACGGCATTAGAGTTAGTGGAAACATTTGCAACTTTGTTGATTAAGTCTCTGGATCGTTTTGTCAAATTTGGTCTTGGAACATTTCTGATGCTATAGGAAGATTGAGAGTTCAATATCAGTACCATACTTTTATGCCACATACATGTGTTAATTTTTGGCTTTGTACTTCTCTGAACTTTGTATCTCTTAAAATGAAACAGTAATGAAGTAATTTATAAGTCAATCTCTGATAATTCAGTTCCTTTCCTGCTTATTATGCCTTTGGTTTGGTTTAAGCTATTAAAATTTTGGATATTATAAATGGTTCGGAATCTGGTTCCAGAACAATTCTGACAGTATAGGAGGATCAGGATTTCGATGTCAGTGCCTGTACTTTTGGATATGCACATATTCATTGTTGTTTTTGTACTTCTTCAGTTTTTTTGAACTTTGTGTTTCTATTAAAGAAATGGCAATGAATCAATTCATAAGTTCACGAGAAATCATATGAAGTTACTTGGTACTCCTATGATATTAAAAACACTGTTCGACTTATTGACATGTAGATGGAAACCTAGGCCTTATGGACTCTATATTTCAGGCCGGAACGGGTATAACAAACACCTTGATAAATATTAGGAAGTACTTCGACAAATCATATGCCATGGAAGCAGAGGACGTGCCTGTAATAGCAACAAGTATTGGCTATGGAATTTACATGTCGGTTTCTAGCAACCTAAGGTACTGCACTTTTCTCTTCAATGTGTAATACTTGTTTCTTTTACATCATGGTTATTGCACTTCATTGCTTGTTTCAAGTTTCTGCTCTGTAATTATATATATTCGATGCTTGTATCAAAGAGTAGGTATTATTGTGTGTTAGACCACTGGTGGAACCAAAAACAAGTAACTTTGAGTTCGTCTTTTGACATGTTCTGGGTCCGCTCGGAAGTCAGATTGCTAAATGAGATACAACACACTTGTAGGAGTATTAAGATAAAATGAGGGAGGAAATAATGTTGTAGCAATTGGAACTTACAGTCTTTACCATGTCTCCAAACTTAGAAGCTTAAACAAATAAAGCAAAGTAAATTCACTATTAGGAGTGGCCTTGATGGTAAGGGTTAGGATGTTTGGAGATACCTAATAGGAATGTCATTGGGTTAGTAACGAATAATATTAGGATAGTCAGGGCGTGTTAGTTTTTAGCCAAGAAAAAGGTTACACGTAGAGTGAGTAAGATTATGATAAAGGTAGACAACAATTTAGTAGGTCTAGGCTCGAGTGATCTCAAGAAGGAGATTTCACTTTCAAGTACCTCAAATACTTGTGAGTTAGTTGTTCTATTTTATCTTGTATCTGTTAATACTATTTTAGTTTTTTGGTTTTTATCAACGCCCTCCAAGAACTATTTGGGTTCAAACCCTTAAAAGAAAATTTAGGTCTACAGTTAAACCATTTGGTTTTTTGTTTTTGGTTTTCTGAAAATAAATTTATAAACATTACTTCCACATATAAGTTTCTATGTTTAGAAATCTACCTTCTTCCCATATTTTAAAAAACCAAGTTTTGAAAACTTTTTCAAAAACTTGTTTCTGTTCTTGGAATTTGGCTAAGAATTCAAATGTTTCGTTAACAAAGATGAAATTTATTGTAAGAAAATTGGGAGAAAATAAGTATAATTTTAAAAAATCAAAAACCAAAAACCAAATGGTTGTCAAATGAGACCCTAGTAATTTATAAATCTTTTCGTCTTTTGAAGTTGGCTTAGTAACTCTAGAGTGGGCAAAACCTCTTTTAGGATTCGTATGGTAAGTCATGAGCGTCAATGTAAGGAGTTGAGCTCTGATACGATGGGCAAGTCCTCTTTTGGAATTAGTGAAGTTGGTCATGAGCATAATGTAAGGAATGAGCCCTGGTGTGTGCGCACATACATACACATACATACATATACACACACATATATCAACGTAAGTTTAATTAGCATATATATTACTCGACATAAAATAGAGGAAAACTTTGTTTTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTTACTTCTAGGCTTTCTTTTCTTGCTTTTTTCACATATTTGTGAGTAAAAATAAATTGAAGTAACCATTACACCCACACATGTTTCTCAAACTCACGACTCGAGCAAAAGTACTACTTTACCCCTCCAACGACGAACTTTTCAATGATGAAACATAAGTGATCTTCTTTAAATTACAAACTACATAAATTCCAATGTACTAAAAAAGTGTGTTTCTCTGGCTTCTTTAGATACCAAATACTTGCAGGAGTAATAGAGCAAAGGATCTTAGAGCCTCTGCTGCACAAACACAAGTTGGCACTGAGTGCAATCTGCTTCGCCGTTCGAACTGGCAACACTTTCTTGGGATCATTGATGTAAGATTTCTTCACACGAGCCTTAAACCCCTCGAAGGACACGTTCGAAAGTGATTTCGAAATGACCAGAATCACTTTGGTCCATGCCCCAAACATGTCCAAAACCTTGTTGCATTCTTTTCAAATTCCTGGCTTGTCTGAACAACTTTTGTGAACTCTTTTTTAGGTGGGTGGATTTTGCAAGATGGACCGGGATCCAAAGAACGAGAGAGTAGAGCGGGAACAATCGACACTTTTGTTCGAGAAATTATTCGACGAGGTTAGTATAATAACATGGATGAGTCTCAATTAGACCAACGCGTCGAGATTATTTTTCGAGTTGCTCTATTATTGCATTTAGGCATATGGTGGTAGATGAATGTTGGGGTGTTTTCTCTGAAGCATAAGGGGGGGTATGATTGTTTGTTTTTACATATTATTTATTATGCTAAAATTATTTATTTGAAGTGTCAGAATGAAAAATAATAATTTCAAATTTGTTGGATCTTGACTATTAATATATTGAAATATTAAACAATTATGATCATGTGGTTTGGAAGTAATAAAGAATCTAGCCGCCACCATAGCCTTCAATCTCTTTGATCTATTCACTAATAAATAATTTAGATATTAGGTAGATATGTTCTTGCATTTTTTTAATACTAATTTAAATTAAGCAAACGAATCTAAATTTATTAATGAAGATTTTTTTTTTTAAATAATAATTTATGCCTGCATTCCTTTTAATTTCTTTTCATTTAAATACATATTTGGTTCGAGTTTTTTAAGTAGGTACTTTTTGGGGGATAATATATACTGTGAGTCTGTGACATCAAACAATTAATTTATTTAAAAAAAACCAATTAATTGCCAACAAGAACATAGCTTAACTGGCATAAAGTTGTACTGTAATACAACATTAAGTATTTATCATTTGGGAAAAATACATTTTTGGTCCCTGAGTTTTCGAACTCAACAAAAATACCTGTAAGGTTTGAGATAAGGAGCACTTTGGTCCTCATTTTTCTGTTAAATCCTGCTGACGTGACACTATTATTTTAATAAAAAAAATTATTTAAAAAATTATTTTAAATAAAAAATATTAAAATAATAAAATATTATTATTTTTTTATATTTTAATTATTTCTCCTTCTCTTACTCCTCTTCGTCTCCATCTTCTTCTTCATCCTAAACCCTCCTTCTTCTTCTTCATCCTAAACCCTCCTTCTTCTTCCTATCTCCGACGACAGGTTTTTTTTTTATTATTATTATTTTCCTTTCTCCCTTCCCTTCTTTTCTTTTTCTTCTTCCTCCCCTCTTTTCACTGTTTTTTTAAATCTGTCGGTGGCGGGCAGTGGCGGCGAGCGGTGGCTGCCGAAGATAGGAAGAAGAAGAAGGAGGAAGAGGATGAAGAAGTAGATGGAGAATAAGAAGGAGAAATAATTTTAAAAAATAAAAAATATTTTTTTATTAAAATAATAGTGTCACGTCAGCAGCCGTTAGGATTTAACAGAAAAATAGACGGCATGGACCAAAGTGCTCCTTATCTCAAACCTCAGGGGTATTTTCGTTGAGTTTAAAAACTCAGGGACTTAACTCAAACCTTAGGGACCAAAAGTGTATTTTTCCCTTATCATTTTTATTATAGGCCCACGTAATAGCCATTTTATATTTGTCTTTTTTTTTTAAAAAAAAAATGCTTATACATTAATTTATAAAAATTTGTCATCATTTTTTTTTTAAAAAAATTCCCCTTGAATTTTGATTCACATCTTGAAAACTAAAAGATGGTTTTCCAAATTTAAACTAAAATTTCAAGAGTTACTCATCACATGGATTCTCACCTTTCCAATTTTTTTTTTTTTTTTTAAAAAGAGAGATTTCATTCAAAAACAACAGAATCCCGAGGGATACAAACAGGTCTCGCTCTTGGAGCGATTATCTAATCATCCAATCAGGATAATTTCGTATCCATAGATGTGGTGTTAGAGAAGAAAGGCCTACACGGGCCATCTTATGAGCAAAACCATTAAATCTACATCACATGGATTCTCACCTTTCCATTATTATTCTTATCGTATTATAGTTCAAATAATGGCCGAGAATCTAAACCTATAGTTACTAATATCTTAATCAGTTTTTTTTATTCATGAATAAGATTTAAATATTTAATATTTAGGACATCTGTATGAATCTTAATTTGAGTTATATTGACAATGACTTGATAAATTAAACCATAATTAAATCAAATCAATATGATATATACTACTTAAATATCAAATTAATTTGGTCCATCACTAATAAGAATTTTATTAATTGAAATAGATCATTGTAAACAAAAAAAAAATTGAAATAGACTAAGTTTATTACTAAAATAATTGATCGAGGAATCATGGGAAGGGAGCAGGAAGGTTACTGTGAGGGTGGCCACACGCTAACGTTATCCGTTTTGAATCTTTAGATGATGACGTCAGCCAATGAGACAAGATGAGGTGGATCCAAGTTGTAGGATTTTGACCGTTGCTTGGGCCCACTTTCAGACCCATCATTCTACCGCAGTATTACGTTTACTTTTAGTACGACACTCTGTCAAGTAAACTTCTTTTTTTTTATATATATAATAATTAGCATCTATTAAAAAAAAAACATCACTTTTCACCTTAAACCGATAAATTACGATAACATGAGCATAGCTCAACTAGCATAGAACTTGTACTAATGACCAAAAGGTCTGTGGTTCAAATTCCTTCACTCCCACATATTGTAAAAAAAGGATTAAGTTACGAATGAAAAAATGATTAAATTACAAGTTTAGTCTTTAAGGTTTTTTATTTGTGTCCGTTTGAACATTGA

mRNA sequence

GTTCAACAATGATAGTGTAAGGCCTAGAATACGAATCTGGATTTGACACCTAATAGGCTTCGGCATTTTCCTGTATCACGTGCAACCTAGCCACGTTACCATACTTTTATGTCTTCGGAATTCCTCGGATGTGGTCTCAGTTCATTCATGGGTAGAGTGAAGATCAAATCATCGATCTTTTGAAGACGATAAATTGTGATAATAAAATTCACCAAGCTATGTTCGAATCCACGGAAATACCTTAACCACTAAACTATAGTCACATCCGCCACGAAGACTTTACATTTCAGCAGCTTTTCAATCTCTGTTGATATTTCAGCACTTTCTCAGCCACAACTAACAGAGAGGCTTCCATATCCCAATCTCTCTTTTTCTCTCTGTCTCTCTCTCTCTCTCTGAAGATTCTCCGGCAAAAAAAAAAATGGCGATCCGAAATTTCACAAATCTCTCCGTACCGCCGCCGTTCCTCCGCCGCTCATCTCCACACAATTTCACTTACATTCTCACCTGCCGCACTCGCACCGCTCCCTCTCTCCGCCTCCACTCCCTCTCCACCGCGAACTCTCCCCGTCGACGCCGCCGCAGCCACGGAATCTCCGCCGCATTCGCCTCTTCCGACGGAATTCCCCCCGGAGGCCACGGAGGAGGAGGCGGCGGCGGCGGAGACGGACATGGAGAGGGCGAGGAGGAGGAGGATCGGGAGAAGAATAAGGCGGAGGCGATTCTGGTGCTGGCGAAGGCCGGGAGGTCGACGGAGAGCCTGCCGAAGGATCTGGCGGCGGCGATTGCGGCGGGGAGAGTGCCGGCGGTGATCGTGGAGAGGTTTCTGGAGTTGGAGAAATCGGCGGCGTGGCGGTGGCTGCTGCAGTTCGGGGGATTTAAAGAACGGGTTCTGGCGGACGACTTGTTCTTGGCTAAGGTCGCCATGGAATGTGGCGTTGGAATTTTCACAAAGACTGCGGCTGAGTTGGAGAAACGCAAGGAAAACTTTAGCAAGGAGCTGGATTTTGTTTGTGCTGACGTGATAATGGCCATTATAGCAGATTTCATGCTTGTTTGGCTTCCTGCTCCCACCGTCTCTCTCAAACCTCCTCTAGCAATCAGTGCTGGACCTCTCACCAAGTTCTTCTATGGCTGCCCTGAAAACGCCTTCCAGGTGGCTTTGGCGGGTACTTCGTTTTCACTTCTTCAGAGAGTTGGCGCAGTGGTGCGTAATGGGGCCAAGCTATTTGCTGTAGGGAGTAGTGCATCTGTGGCCGGAACGGGTATAACAAACACCTTGATAAATATTAGGAAGTACTTCGACAAATCATATGCCATGGAAGCAGAGGACGTGCCTGTAATAGCAACAAGTATTGGCTATGGAATTTACATGTCGGTTTCTAGCAACCTAAGATACCAAATACTTGCAGGAGTAATAGAGCAAAGGATCTTAGAGCCTCTGCTGCACAAACACAAGTTGGCACTGAGTGCAATCTGCTTCGCCGTTCGAACTGGCAACACTTTCTTGGGATCATTGATGTGGGTGGATTTTGCAAGATGGACCGGGATCCAAAGAACGAGAGAGTAGAGCGGGAACAATCGACACTTTTGTTCGAGAAATTATTCGACGAGATGATGACGTCAGCCAATGAGACAAGATGAGGTGGATCCAAGTTGTAGGATTTTGACCGTTGCTTGGGCCCACTTTCAGACCCATCATTCTACCGCAGTATTACGTTTACTTTTAGTACGACACTCTGTCAAGTAAACTTCTTTTTTTTTATATATATAATAATTAGCATCTATTAAAAAAAAAACATCACTTTTCACCTTAAACCGATAAATTACGATAACATGAGCATAGCTCAACTAGCATAGAACTTGTACTAATGACCAAAAGGTCTGTGGTTCAAATTCCTTCACTCCCACATATTGTAAAAAAAGGATTAAGTTACGAATGAAAAAATGATTAAATTACAAGTTTAGTCTTTAAGGTTTTTTATTTGTGTCCGTTTGAACATTGA

Coding sequence (CDS)

ATGGCGATCCGAAATTTCACAAATCTCTCCGTACCGCCGCCGTTCCTCCGCCGCTCATCTCCACACAATTTCACTTACATTCTCACCTGCCGCACTCGCACCGCTCCCTCTCTCCGCCTCCACTCCCTCTCCACCGCGAACTCTCCCCGTCGACGCCGCCGCAGCCACGGAATCTCCGCCGCATTCGCCTCTTCCGACGGAATTCCCCCCGGAGGCCACGGAGGAGGAGGCGGCGGCGGCGGAGACGGACATGGAGAGGGCGAGGAGGAGGAGGATCGGGAGAAGAATAAGGCGGAGGCGATTCTGGTGCTGGCGAAGGCCGGGAGGTCGACGGAGAGCCTGCCGAAGGATCTGGCGGCGGCGATTGCGGCGGGGAGAGTGCCGGCGGTGATCGTGGAGAGGTTTCTGGAGTTGGAGAAATCGGCGGCGTGGCGGTGGCTGCTGCAGTTCGGGGGATTTAAAGAACGGGTTCTGGCGGACGACTTGTTCTTGGCTAAGGTCGCCATGGAATGTGGCGTTGGAATTTTCACAAAGACTGCGGCTGAGTTGGAGAAACGCAAGGAAAACTTTAGCAAGGAGCTGGATTTTGTTTGTGCTGACGTGATAATGGCCATTATAGCAGATTTCATGCTTGTTTGGCTTCCTGCTCCCACCGTCTCTCTCAAACCTCCTCTAGCAATCAGTGCTGGACCTCTCACCAAGTTCTTCTATGGCTGCCCTGAAAACGCCTTCCAGGTGGCTTTGGCGGGTACTTCGTTTTCACTTCTTCAGAGAGTTGGCGCAGTGGTGCGTAATGGGGCCAAGCTATTTGCTGTAGGGAGTAGTGCATCTGTGGCCGGAACGGGTATAACAAACACCTTGATAAATATTAGGAAGTACTTCGACAAATCATATGCCATGGAAGCAGAGGACGTGCCTGTAATAGCAACAAGTATTGGCTATGGAATTTACATGTCGGTTTCTAGCAACCTAAGATACCAAATACTTGCAGGAGTAATAGAGCAAAGGATCTTAGAGCCTCTGCTGCACAAACACAAGTTGGCACTGAGTGCAATCTGCTTCGCCGTTCGAACTGGCAACACTTTCTTGGGATCATTGATGTGGGTGGATTTTGCAAGATGGACCGGGATCCAAAGAACGAGAGAGTAG

Protein sequence

MAIRNFTNLSVPPPFLRRSSPHNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGISAAFASSDGIPPGGHGGGGGGGGDGHGEGEEEEDREKNKAEAILVLAKAGRSTESLPKDLAAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFYGCPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKSYAMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLGSLMWVDFARWTGIQRTRE

Homology

[Close]

BLAST of Lcy02g003980 vs. ExPASy Swiss-Prot
Match: Q94CJ5 (Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER4 PE=2 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 8.4e-117
Identity = 227/381 (59.58%), Postives = 292/381 (76.64%), Query Frame = 0


Query: 7   TNLSVP--PPFLRRSSPHNFTYILTCRT----RTAPSLRLHSLSTANSPRRRRRSHGISA 66
           +NL+ P    F R SS  +F  +++ ++    R  P   + S S+ N             
Sbjct: 20  SNLTWPHIASFPRLSSSSSFNGVISAKSISFNRRVPITPVLSASSGN------------- 79

Query: 67  AFASSDGIPPGGHGGGGGG-GGDGHGEGEEEEDREKNKAEAILVLAKAGRSTESLPKDLA 126
               SD    G  GGGGGG GG   G+G  +EDR++N+ EA+L+L ++G   ESLPKDLA
Sbjct: 80  --GGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELESLPKDLA 139

Query: 127 AAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFTKT 186
           AAI AGR+P  ++ RFLEL+KSA  RWL+QFGGF+ER+LADDLF+AK+AMECGVGIFTKT
Sbjct: 140 AAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGVGIFTKT 199

Query: 187 AAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFYGC 246
           AAE E+R+ENF  EL+ V ADV MAIIADFMLV+LPAPTVSL+PPLA++AG ++KFF+ C
Sbjct: 200 AAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGISKFFHNC 259

Query: 247 PENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKSYA 306
           P+NAFQVAL+GTS++LLQR+GA+ RNGAKLFAVG+++S+ GT ITN  I  RK  D++  
Sbjct: 260 PDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKAVDQNSE 319

Query: 307 MEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVRTG 366
            E E VP+++TS+ YG+YM+VSSNLRYQI+AGVIEQR+LEP+LH+HKLALSA+CFAVRTG
Sbjct: 320 GEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQHKLALSALCFAVRTG 379

Query: 367 NTFLGSLMWVDFARWTGIQRT 381
           NTFLGSL+WVD+AR  GIQ++
Sbjct: 380 NTFLGSLLWVDYARLIGIQKS 385

[Close]

BLAST of Lcy02g003980 vs. ExPASy Swiss-Prot
Match: Q9SIY5 (Protein RETICULATA-RELATED 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER5 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-48
Identity = 115/291 (39.52%), Postives = 169/291 (58.08%), Query Frame = 0


Query: 96  NKAEAILVLAKAGRSTESLPKDLAAAIAAGRVPAVIVERFLELEKSAAWRWLLQ-FGGFK 155
           ++AE   V+  AGR  ++LP+D+   +  G V   I++ F +LE+      L Q F GF+
Sbjct: 410 DRAEIARVMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQRFQGFR 469

Query: 156 ERVLADDLFLAKVAMECGVGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWL 215
           ER+LAD  FL ++A+E  + I T   A+ EKRKENF +ELD+V  D + A + DF  VWL
Sbjct: 470 ERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWL 529

Query: 216 PAPTVSLKPPLAISAGP-----LTKFFYGCPENAFQVALAGTSFSLLQRVGAVVRNGAKL 275
           PAPT+S       + GP     L       P+NAFQ +L G  ++L  R+ +V+  G KL
Sbjct: 530 PAPTLSFISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGGLKL 589

Query: 276 FAVGSSASVAGTGITNTLINIRKYFDKSYAM--EAEDVPVIATSIGYGIYMSVSSNLRYQ 335
             VG  +S A  G +N L  IRK+      +  +A+  P++ T++ YG Y+  SSN+RYQ
Sbjct: 590 AGVGVVSSFAAVGSSNALYAIRKFIKPELGVGEQAKRSPMLKTALVYGGYLGTSSNIRYQ 649

Query: 336 ILAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLGSLMWVDFARWTGIQ 379
           I+AG+IE RI +  L    L ++ I F VR  N++ G+  W+D AR TG+Q
Sbjct: 650 IIAGLIEHRISDE-LSSQPLLVNMISFVVRVANSYFGTQQWIDLARSTGLQ 699

[Close]

BLAST of Lcy02g003980 vs. ExPASy Swiss-Prot
Match: Q8RWG3 (Protein RETICULATA-RELATED 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER6 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-45
Identity = 111/291 (38.14%), Postives = 167/291 (57.39%), Query Frame = 0


Query: 96  NKAEAILVLAKAGRSTESLPKDLAAAIAAGRVPAVIVERFLELEKSAAWRWLLQ-FGGFK 155
           ++AE   V+  AGR  ++LP D+   +  G V   +++   +LE+      L Q F GF+
Sbjct: 419 DRAEIARVMNAAGRRRDALPPDIQNGLDLGLVSPEVLQNLFDLEQYPLISELTQRFQGFR 478

Query: 156 ERVLADDLFLAKVAMECGVGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWL 215
           ER+LAD  FL ++A+E  + I T   A+ EKRKENF +E+D+V  D +   + DF  VWL
Sbjct: 479 ERLLADPKFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWL 538

Query: 216 PAPTVSLKPPLAISAGP-----LTKFFYGCPENAFQVALAGTSFSLLQRVGAVVRNGAKL 275
           PAPT+S       + GP     L       P+NAFQ +LAG  ++L  R+ +V+  G KL
Sbjct: 539 PAPTLSFLSYADETTGPDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIASVIVGGLKL 598

Query: 276 FAVGSSASVAGTGITNTLINIRKYF--DKSYAMEAEDVPVIATSIGYGIYMSVSSNLRYQ 335
             VG  +S A  G +N L   RK    +   A + +  P++ T++ YG ++  S+NLRYQ
Sbjct: 599 AGVGVVSSFAAVGASNALNIARKVIKPELVVAEKPKRSPLLKTAMVYGGFLGTSANLRYQ 658

Query: 336 ILAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLGSLMWVDFARWTGIQ 379
           I+AG+IE R+ +  L    L ++AI F VRT N++ G+  W+D AR TG+Q
Sbjct: 659 IIAGLIEHRLSDE-LSSQPLLVNAISFVVRTLNSYFGTQQWIDLARSTGLQ 708

[Close]

BLAST of Lcy02g003980 vs. ExPASy Swiss-Prot
Match: Q9FGP9 (Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-29
Identity = 105/334 (31.44%), Postives = 171/334 (51.20%), Query Frame = 0


Query: 64  SSDGIPPGGHGGGGGGGGDGHG-EGEEEEDR-EKNKAEAILVLAKAGRSTE----SLPKD 123
           ++DG   GG+G GGGGGGDG G +GE+E D+ E+ +   IL   +  + TE    +LP+D
Sbjct: 109 NNDGGGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETERRGITLPED 168

Query: 124 LAAAIAAGRVPAVIVERFLELEKSAAWRWLLQF-----GGFKERVLADDLFLAKVAMECG 183
           +  A  +  +  + + R+L+L+ S    W L F        + R+LAD  FL KV  E  
Sbjct: 169 MLEAAKSVGIRKLFLLRYLDLQGSV---WPLGFLMRSCAMLRNRMLADPSFLFKVGTEVA 228

Query: 184 VGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPL 243
           +     T AE++KR E+F  E +   AD+++ ++ D  LV L AP   +  P   S G  
Sbjct: 229 IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLF 288

Query: 244 TKFFYGC---PENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLIN 303
                 C   P + F+    G  FS+ QR+      G    +VG    + G GI N ++ 
Sbjct: 289 KDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMT 348

Query: 304 IRKYFDKSYAMEAEDVPV---IATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHK 363
            ++   KS     EDVP+     ++  +G+++ +SSN RYQI+ G+  +R++E      +
Sbjct: 349 AKRSVKKS----EEDVPIPPLFESAALWGVFLGLSSNARYQIINGL--ERVVEGSTAAKR 408

Query: 364 LALSAICF--AVRTGNTFLGSLMWVDFARWTGIQ 379
           + + A+ F   VR  N   G + +VD+A+ +G+Q
Sbjct: 409 IPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433

[Close]

BLAST of Lcy02g003980 vs. ExPASy Swiss-Prot
Match: B9DFK5 (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-29
Identity = 106/333 (31.83%), Postives = 167/333 (50.15%), Query Frame = 0


Query: 58  ISAAFASSDGIPPGGHGGGGGGGGDGHGEGEEEEDREKN---KAEAILVLAKAGRSTESL 117
           +   F  SDG    G GGGGG GG+G GEGE+ E++E     K E ++   +A  +T  L
Sbjct: 111 VGDGFNGSDG---NGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGAT--L 170

Query: 118 PKDLAAAIAAGRVPAVIVERFLELEKSAAWRW--LLQFGGFKERVLADDLFLAKVAMECG 177
           P D+  A     +  V++ R+L+L+ SA      +  +   + R+LAD  FL K+  E  
Sbjct: 171 PSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIV 230

Query: 178 VGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISA--G 237
           +     T AE++KR ++F  E +   AD+++  + +  LV + AP V    P A     G
Sbjct: 231 IDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLG 290

Query: 238 PLTKFFYGCPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINI 297
            +   +   P + F+    G  FS  QR+      G    AVG    + G GI N ++  
Sbjct: 291 RMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTA 350

Query: 298 RKYFDKSYAMEAEDVPV---IATSIGYGIYMSVSSNLRYQILAGVIEQRILE--PLLHKH 357
           ++  +KS     E++PV   I ++  +G+++SVSSN RYQI+ G+  +R++E  P   K 
Sbjct: 351 KRNINKS----EENIPVPPLIKSAALWGVFLSVSSNTRYQIINGL--ERVVEASPFAKKF 410

Query: 358 KLALSAICFAVRTGNTFLGSLMWVDFARWTGIQ 379
             A  A    VR  N   G + +VD+AR +G Q
Sbjct: 411 PPAAMAFTVGVRLANNIYGGMQFVDWARLSGCQ 432

[Close]

BLAST of Lcy02g003980 vs. ExPASy TrEMBL
Match: A0A6J1J072 (protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481520 PE=3 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 3.0e-178
Identity = 338/384 (88.02%), Postives = 350/384 (91.15%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSPHNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGISA 60
           MAIRNFTNLS P PFLRRS P NFTYILTCRT TAPSLR HS        RRRRS GIS 
Sbjct: 1   MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHS-------PRRRRSLGISV 60

Query: 61  AFASSDGIPPGGH--GGGGGGGGDGHGEGEEEEDREKNKAEAILVLAKAGRSTESLPKDL 120
           AFASS GIPPGGH  GGGGGGGGDGH EG EEEDREKN+AEAI VLA+AGRSTESLPKDL
Sbjct: 61  AFASSGGIPPGGHDRGGGGGGGGDGH-EGGEEEDREKNRAEAIAVLAEAGRSTESLPKDL 120

Query: 121 AAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFTK 180
           AAAIAAGRVPAVIVERFLE+EKSA  RWL+QFGGFKER+LADDLFLAK+AMECGVGIFTK
Sbjct: 121 AAAIAAGRVPAVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTK 180

Query: 181 TAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFYG 240
           TAAELEKRKENFSKELDFVCADVIMAI+ADFMLVWLPAPTVSLKPPL ISAG LTK FYG
Sbjct: 181 TAAELEKRKENFSKELDFVCADVIMAIVADFMLVWLPAPTVSLKPPLTISAGLLTKVFYG 240

Query: 241 CPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKSY 300
           CPENAFQVA AGTS+S LQRVGAVVRNGAKLFAVGS ASV GTGITN+LIN+RK FDKSY
Sbjct: 241 CPENAFQVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKSY 300

Query: 301 AMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVRT 360
           AMEAEDVPV+ATSIGYG YMSVSSNLRYQILAGVIEQR+LEP LHKHKLALSAICFAVRT
Sbjct: 301 AMEAEDVPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPFLHKHKLALSAICFAVRT 360

Query: 361 GNTFLGSLMWVDFARWTGIQRTRE 383
           GNTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 GNTFLGSLMWVDFARWTGIQRTRE 376

[Close]

BLAST of Lcy02g003980 vs. ExPASy TrEMBL
Match: A0A6J1F6R6 (protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441387 PE=3 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 2.0e-177
Identity = 336/383 (87.73%), Postives = 348/383 (90.86%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSPHNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGISA 60
           MAIRNFTNLS P PFLRRS P NFTYILTCRT  APSLR HS        RRRRS GIS 
Sbjct: 1   MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCAAPSLRFHS-------PRRRRSLGISV 60

Query: 61  AFASSDGIPPGGHGGGGGGGGDGHG-EGEEEEDREKNKAEAILVLAKAGRSTESLPKDLA 120
           AFASS GIPPGGH GGGGGGG G G EG EEEDREKN+AEAI VLA+AGRSTESLPKDLA
Sbjct: 61  AFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAEAGRSTESLPKDLA 120

Query: 121 AAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFTKT 180
           AAIAAGRVP VIVERFLE+EKSA  RWL+QFGGFKER+LADDLFLAK+AMECGVGIFTKT
Sbjct: 121 AAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKT 180

Query: 181 AAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFYGC 240
           AAELEKRKENFSKELDFVCADVIMAI+ADFMLVWLPAPTVSLKPPLAISAG LTK FYGC
Sbjct: 181 AAELEKRKENFSKELDFVCADVIMAIVADFMLVWLPAPTVSLKPPLAISAGLLTKLFYGC 240

Query: 241 PENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKSYA 300
           PENAFQVA AGTS+S LQRVGAVVRNGAKLFAVGS ASV GTGITN+LIN+RK FDKSYA
Sbjct: 241 PENAFQVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKSYA 300

Query: 301 MEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVRTG 360
           MEAEDVPV+ATSIGYG YMSVSSNLRYQILAGVIEQR+LEPLLHKHKLALSAICFAVRTG
Sbjct: 301 MEAEDVPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPLLHKHKLALSAICFAVRTG 360

Query: 361 NTFLGSLMWVDFARWTGIQRTRE 383
           NTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 NTFLGSLMWVDFARWTGIQRTRE 376

[Close]

BLAST of Lcy02g003980 vs. ExPASy TrEMBL
Match: A0A0A0LCC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G686720 PE=3 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 4.1e-175
Identity = 336/385 (87.27%), Postives = 350/385 (90.91%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSP-HNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGIS 60
           MAIRN TNLS+PPPFL RS P  NF YILT  T T PSLR   L+   SP R RR+  IS
Sbjct: 1   MAIRNITNLSIPPPFLSRSPPTPNFIYILTSPTHTPPSLR---LAATTSPLRPRRTLRIS 60

Query: 61  AAFASSDG-IPPGGHGGGGGGGGDGHGEGEE-EEDREKNKAEAILVLAKAGRSTESLPKD 120
            AFASSDG IPPGGHGGGGGG G G G GEE EEDREKN+AEA +VLA+AGRSTESLPKD
Sbjct: 61  LAFASSDGTIPPGGHGGGGGGDGHGDGGGEEGEEDREKNRAEAFVVLAEAGRSTESLPKD 120

Query: 121 LAAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFT 180
           LA AIAAGRVPAVIVERFLELEKSA  RWL+QFGGFKERVLADDLFLAKVAMECGVGIFT
Sbjct: 121 LAGAIAAGRVPAVIVERFLELEKSAVLRWLMQFGGFKERVLADDLFLAKVAMECGVGIFT 180

Query: 181 KTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFY 240
           KTAAELEKRK+NF+KELDFVCADVIMAI+ADFMLVWLPAPTVSLKP LAISAGPLTKFFY
Sbjct: 181 KTAAELEKRKDNFNKELDFVCADVIMAIVADFMLVWLPAPTVSLKPALAISAGPLTKFFY 240

Query: 241 GCPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKS 300
           GCPENAFQVALAGTSFS LQRVGAVVRNGAKLFAVGS ASV GTGITNTLINIRK+FDKS
Sbjct: 241 GCPENAFQVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKS 300

Query: 301 YAMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVR 360
           YAMEAEDVPV+ATSIGYG+YMSVSSNLRYQI+AGVIEQRILEPLLHKHKLALSAICFAVR
Sbjct: 301 YAMEAEDVPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVR 360

Query: 361 TGNTFLGSLMWVDFARWTGIQRTRE 383
           TGNTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 TGNTFLGSLMWVDFARWTGIQRTRE 382

[Close]

BLAST of Lcy02g003980 vs. ExPASy TrEMBL
Match: A0A5A7TXM9 (Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001130 PE=3 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 4.5e-174
Identity = 336/385 (87.27%), Postives = 350/385 (90.91%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSP-HNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGIS 60
           MAIRNF+NLS+PPPFL  S P  NFTYILT  T + PSLR   L+   SP R RR+  IS
Sbjct: 1   MAIRNFSNLSIPPPFLSPSPPTPNFTYILTSPTHSPPSLR---LAPTTSPLRPRRTLRIS 60

Query: 61  AAFASSDG-IPPGGHGGGGGGGGDGH-GEGEEEEDREKNKAEAILVLAKAGRSTESLPKD 120
            AFASSDG IPPGGHG GGGG G G  GE EEEEDREKN+AEAI VLA+AGRS ESLPKD
Sbjct: 61  LAFASSDGTIPPGGHGSGGGGHGHGDGGEEEEEEDREKNRAEAIAVLAEAGRSIESLPKD 120

Query: 121 LAAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFT 180
           LA AIAAGRVPAVIVERFLELEKSAA RWL+QFGGFKERVLADDLFLAKVAMECGVGIFT
Sbjct: 121 LAGAIAAGRVPAVIVERFLELEKSAALRWLMQFGGFKERVLADDLFLAKVAMECGVGIFT 180

Query: 181 KTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFY 240
           KTAAELEKRKENFSKELDFVCADVIMAI+ADFMLVWLPAPTVSLKP LAISAGPLTKFFY
Sbjct: 181 KTAAELEKRKENFSKELDFVCADVIMAIVADFMLVWLPAPTVSLKPALAISAGPLTKFFY 240

Query: 241 GCPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKS 300
           GCPENAFQVALAGTSFS LQRVGAVVRNGAKLFAVGS ASV GTGITNTLINIRK+FDKS
Sbjct: 241 GCPENAFQVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKS 300

Query: 301 YAMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVR 360
           YAMEAEDVPV+ATSIGYG+YMSVSSNLRYQI+AGVIEQR+LEPLLHKHKLALSAICFAVR
Sbjct: 301 YAMEAEDVPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRMLEPLLHKHKLALSAICFAVR 360

Query: 361 TGNTFLGSLMWVDFARWTGIQRTRE 383
           TGNTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 TGNTFLGSLMWVDFARWTGIQRTRE 382

[Close]

BLAST of Lcy02g003980 vs. ExPASy TrEMBL
Match: A0A1S3CG26 (protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500333 PE=3 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 4.5e-174
Identity = 336/385 (87.27%), Postives = 350/385 (90.91%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSP-HNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGIS 60
           MAIRNF+NLS+PPPFL  S P  NFTYILT  T + PSLR   L+   SP R RR+  IS
Sbjct: 1   MAIRNFSNLSIPPPFLSPSPPTPNFTYILTSPTHSPPSLR---LAPTTSPLRPRRTLRIS 60

Query: 61  AAFASSDG-IPPGGHGGGGGGGGDGH-GEGEEEEDREKNKAEAILVLAKAGRSTESLPKD 120
            AFASSDG IPPGGHG GGGG G G  GE EEEEDREKN+AEAI VLA+AGRS ESLPKD
Sbjct: 61  LAFASSDGTIPPGGHGSGGGGHGHGDGGEEEEEEDREKNRAEAIAVLAEAGRSIESLPKD 120

Query: 121 LAAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFT 180
           LA AIAAGRVPAVIVERFLELEKSAA RWL+QFGGFKERVLADDLFLAKVAMECGVGIFT
Sbjct: 121 LAGAIAAGRVPAVIVERFLELEKSAALRWLMQFGGFKERVLADDLFLAKVAMECGVGIFT 180

Query: 181 KTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFY 240
           KTAAELEKRKENFSKELDFVCADVIMAI+ADFMLVWLPAPTVSLKP LAISAGPLTKFFY
Sbjct: 181 KTAAELEKRKENFSKELDFVCADVIMAIVADFMLVWLPAPTVSLKPALAISAGPLTKFFY 240

Query: 241 GCPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKS 300
           GCPENAFQVALAGTSFS LQRVGAVVRNGAKLFAVGS ASV GTGITNTLINIRK+FDKS
Sbjct: 241 GCPENAFQVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKS 300

Query: 301 YAMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVR 360
           YAMEAEDVPV+ATSIGYG+YMSVSSNLRYQI+AGVIEQR+LEPLLHKHKLALSAICFAVR
Sbjct: 301 YAMEAEDVPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRMLEPLLHKHKLALSAICFAVR 360

Query: 361 TGNTFLGSLMWVDFARWTGIQRTRE 383
           TGNTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 TGNTFLGSLMWVDFARWTGIQRTRE 382

[Close]

BLAST of Lcy02g003980 vs. NCBI nr
Match: XP_023526496.1 (protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 637.5 bits (1643), Expect = 7.4e-179
Identity = 340/385 (88.31%), Postives = 352/385 (91.43%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSPHNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGISA 60
           MAIRNFTNLS P PFLRRS P NFTYILTCRT TAPSLR HS        RRRRS GIS 
Sbjct: 1   MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHS-------PRRRRSLGISV 60

Query: 61  AFASSDGIPPGGH---GGGGGGGGDGHGEGEEEEDREKNKAEAILVLAKAGRSTESLPKD 120
           AFASS GIPPGGH   GGGGGGGGDGH EG EEEDREKN+AEAI VLA+AGRSTESLPKD
Sbjct: 61  AFASSGGIPPGGHDGGGGGGGGGGDGH-EGGEEEDREKNRAEAIAVLAEAGRSTESLPKD 120

Query: 121 LAAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFT 180
           LAAAIAAGRVPAVIVERFLE+EKSA  RWL+QFGGFKER+LADDLFLAK+AMECGVGIFT
Sbjct: 121 LAAAIAAGRVPAVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFT 180

Query: 181 KTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFY 240
           KTAAELEKRKENFSKELDFVCADVIMAI+ADFMLVWLPAPTVSLKPPLAISAG LTK FY
Sbjct: 181 KTAAELEKRKENFSKELDFVCADVIMAIVADFMLVWLPAPTVSLKPPLAISAGLLTKLFY 240

Query: 241 GCPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKS 300
           GCPENAFQVA AGTS+S LQRVGAVVRNGAKLFAVGS ASV GTGITN+LIN+RK FDKS
Sbjct: 241 GCPENAFQVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKS 300

Query: 301 YAMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVR 360
           YAMEAEDVPV+ATSIGYG YMSVSSNLRYQILAGVIEQR+LEPLLHKHKLALSAICFAVR
Sbjct: 301 YAMEAEDVPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPLLHKHKLALSAICFAVR 360

Query: 361 TGNTFLGSLMWVDFARWTGIQRTRE 383
           TGNTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 TGNTFLGSLMWVDFARWTGIQRTRE 377

[Close]

BLAST of Lcy02g003980 vs. NCBI nr
Match: XP_022982741.1 (protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 634.4 bits (1635), Expect = 6.3e-178
Identity = 338/384 (88.02%), Postives = 350/384 (91.15%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSPHNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGISA 60
           MAIRNFTNLS P PFLRRS P NFTYILTCRT TAPSLR HS        RRRRS GIS 
Sbjct: 1   MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHS-------PRRRRSLGISV 60

Query: 61  AFASSDGIPPGGH--GGGGGGGGDGHGEGEEEEDREKNKAEAILVLAKAGRSTESLPKDL 120
           AFASS GIPPGGH  GGGGGGGGDGH EG EEEDREKN+AEAI VLA+AGRSTESLPKDL
Sbjct: 61  AFASSGGIPPGGHDRGGGGGGGGDGH-EGGEEEDREKNRAEAIAVLAEAGRSTESLPKDL 120

Query: 121 AAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFTK 180
           AAAIAAGRVPAVIVERFLE+EKSA  RWL+QFGGFKER+LADDLFLAK+AMECGVGIFTK
Sbjct: 121 AAAIAAGRVPAVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTK 180

Query: 181 TAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFYG 240
           TAAELEKRKENFSKELDFVCADVIMAI+ADFMLVWLPAPTVSLKPPL ISAG LTK FYG
Sbjct: 181 TAAELEKRKENFSKELDFVCADVIMAIVADFMLVWLPAPTVSLKPPLTISAGLLTKVFYG 240

Query: 241 CPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKSY 300
           CPENAFQVA AGTS+S LQRVGAVVRNGAKLFAVGS ASV GTGITN+LIN+RK FDKSY
Sbjct: 241 CPENAFQVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKSY 300

Query: 301 AMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVRT 360
           AMEAEDVPV+ATSIGYG YMSVSSNLRYQILAGVIEQR+LEP LHKHKLALSAICFAVRT
Sbjct: 301 AMEAEDVPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPFLHKHKLALSAICFAVRT 360

Query: 361 GNTFLGSLMWVDFARWTGIQRTRE 383
           GNTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 GNTFLGSLMWVDFARWTGIQRTRE 376

[Close]

BLAST of Lcy02g003980 vs. NCBI nr
Match: KAG6581562.1 (Protein RETICULATA-RELATED 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 632.9 bits (1631), Expect = 1.8e-177
Identity = 337/385 (87.53%), Postives = 349/385 (90.65%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSPHNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGISA 60
           MAIRNFTNLS P PFLRRS P NFTYILTCRT TAPSLR HS        RRRRS GIS 
Sbjct: 1   MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHS-------PRRRRSLGISV 60

Query: 61  AFASSDGIPPGGHGGGGGGGGDGHG---EGEEEEDREKNKAEAILVLAKAGRSTESLPKD 120
           AFASS GIPPGGH GGGGGGG G G   EG EEEDREKN+AEAI VLA+AGRSTESLPKD
Sbjct: 61  AFASSGGIPPGGHDGGGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAEAGRSTESLPKD 120

Query: 121 LAAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFT 180
           LAAAIAAGRVP VIVERFLE+EKSA  RWL+QFGGFKER+LADDLFLAK+AMECGVGIFT
Sbjct: 121 LAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFT 180

Query: 181 KTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFY 240
           KTAAELEKRKENFSKELDFVCADVIMAI+ADFMLVWLPAPTVSLKPPLAISAG LTK FY
Sbjct: 181 KTAAELEKRKENFSKELDFVCADVIMAIVADFMLVWLPAPTVSLKPPLAISAGLLTKLFY 240

Query: 241 GCPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKS 300
           GCPENAFQVA AGTS+S LQRVGAVVRNGAKLFAVGS ASV GTGITN+LIN+RK FDKS
Sbjct: 241 GCPENAFQVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKS 300

Query: 301 YAMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVR 360
           YAMEAEDVPV+ATSIGYG YMSVSSNLRYQILAGVIEQR+LEPLLHKHKLALSAICFAVR
Sbjct: 301 YAMEAEDVPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPLLHKHKLALSAICFAVR 360

Query: 361 TGNTFLGSLMWVDFARWTGIQRTRE 383
           TGNTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 TGNTFLGSLMWVDFARWTGIQRTRE 378

[Close]

BLAST of Lcy02g003980 vs. NCBI nr
Match: XP_022934115.1 (protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 631.7 bits (1628), Expect = 4.1e-177
Identity = 336/383 (87.73%), Postives = 348/383 (90.86%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSPHNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGISA 60
           MAIRNFTNLS P PFLRRS P NFTYILTCRT  APSLR HS        RRRRS GIS 
Sbjct: 1   MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCAAPSLRFHS-------PRRRRSLGISV 60

Query: 61  AFASSDGIPPGGHGGGGGGGGDGHG-EGEEEEDREKNKAEAILVLAKAGRSTESLPKDLA 120
           AFASS GIPPGGH GGGGGGG G G EG EEEDREKN+AEAI VLA+AGRSTESLPKDLA
Sbjct: 61  AFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAEAGRSTESLPKDLA 120

Query: 121 AAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFTKT 180
           AAIAAGRVP VIVERFLE+EKSA  RWL+QFGGFKER+LADDLFLAK+AMECGVGIFTKT
Sbjct: 121 AAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKT 180

Query: 181 AAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFYGC 240
           AAELEKRKENFSKELDFVCADVIMAI+ADFMLVWLPAPTVSLKPPLAISAG LTK FYGC
Sbjct: 181 AAELEKRKENFSKELDFVCADVIMAIVADFMLVWLPAPTVSLKPPLAISAGLLTKLFYGC 240

Query: 241 PENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKSYA 300
           PENAFQVA AGTS+S LQRVGAVVRNGAKLFAVGS ASV GTGITN+LIN+RK FDKSYA
Sbjct: 241 PENAFQVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKSYA 300

Query: 301 MEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVRTG 360
           MEAEDVPV+ATSIGYG YMSVSSNLRYQILAGVIEQR+LEPLLHKHKLALSAICFAVRTG
Sbjct: 301 MEAEDVPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPLLHKHKLALSAICFAVRTG 360

Query: 361 NTFLGSLMWVDFARWTGIQRTRE 383
           NTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 NTFLGSLMWVDFARWTGIQRTRE 376

[Close]

BLAST of Lcy02g003980 vs. NCBI nr
Match: XP_004149738.1 (protein RETICULATA-RELATED 4, chloroplastic [Cucumis sativus] >KGN58569.1 hypothetical protein Csa_001009 [Cucumis sativus])

HSP 1 Score: 624.0 bits (1608), Expect = 8.5e-175
Identity = 336/385 (87.27%), Postives = 350/385 (90.91%), Query Frame = 0


Query: 1   MAIRNFTNLSVPPPFLRRSSP-HNFTYILTCRTRTAPSLRLHSLSTANSPRRRRRSHGIS 60
           MAIRN TNLS+PPPFL RS P  NF YILT  T T PSLR   L+   SP R RR+  IS
Sbjct: 1   MAIRNITNLSIPPPFLSRSPPTPNFIYILTSPTHTPPSLR---LAATTSPLRPRRTLRIS 60

Query: 61  AAFASSDG-IPPGGHGGGGGGGGDGHGEGEE-EEDREKNKAEAILVLAKAGRSTESLPKD 120
            AFASSDG IPPGGHGGGGGG G G G GEE EEDREKN+AEA +VLA+AGRSTESLPKD
Sbjct: 61  LAFASSDGTIPPGGHGGGGGGDGHGDGGGEEGEEDREKNRAEAFVVLAEAGRSTESLPKD 120

Query: 121 LAAAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFT 180
           LA AIAAGRVPAVIVERFLELEKSA  RWL+QFGGFKERVLADDLFLAKVAMECGVGIFT
Sbjct: 121 LAGAIAAGRVPAVIVERFLELEKSAVLRWLMQFGGFKERVLADDLFLAKVAMECGVGIFT 180

Query: 181 KTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFY 240
           KTAAELEKRK+NF+KELDFVCADVIMAI+ADFMLVWLPAPTVSLKP LAISAGPLTKFFY
Sbjct: 181 KTAAELEKRKDNFNKELDFVCADVIMAIVADFMLVWLPAPTVSLKPALAISAGPLTKFFY 240

Query: 241 GCPENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKS 300
           GCPENAFQVALAGTSFS LQRVGAVVRNGAKLFAVGS ASV GTGITNTLINIRK+FDKS
Sbjct: 241 GCPENAFQVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKS 300

Query: 301 YAMEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVR 360
           YAMEAEDVPV+ATSIGYG+YMSVSSNLRYQI+AGVIEQRILEPLLHKHKLALSAICFAVR
Sbjct: 301 YAMEAEDVPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVR 360

Query: 361 TGNTFLGSLMWVDFARWTGIQRTRE 383
           TGNTFLGSLMWVDFARWTGIQRTRE
Sbjct: 361 TGNTFLGSLMWVDFARWTGIQRTRE 382

[Close]

BLAST of Lcy02g003980 vs. TAIR 10
Match: AT5G12470.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 421.8 bits (1083), Expect = 6.0e-118
Identity = 227/381 (59.58%), Postives = 292/381 (76.64%), Query Frame = 0


Query: 7   TNLSVP--PPFLRRSSPHNFTYILTCRT----RTAPSLRLHSLSTANSPRRRRRSHGISA 66
           +NL+ P    F R SS  +F  +++ ++    R  P   + S S+ N             
Sbjct: 20  SNLTWPHIASFPRLSSSSSFNGVISAKSISFNRRVPITPVLSASSGN------------- 79

Query: 67  AFASSDGIPPGGHGGGGGG-GGDGHGEGEEEEDREKNKAEAILVLAKAGRSTESLPKDLA 126
               SD    G  GGGGGG GG   G+G  +EDR++N+ EA+L+L ++G   ESLPKDLA
Sbjct: 80  --GGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELESLPKDLA 139

Query: 127 AAIAAGRVPAVIVERFLELEKSAAWRWLLQFGGFKERVLADDLFLAKVAMECGVGIFTKT 186
           AAI AGR+P  ++ RFLEL+KSA  RWL+QFGGF+ER+LADDLF+AK+AMECGVGIFTKT
Sbjct: 140 AAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGVGIFTKT 199

Query: 187 AAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPLTKFFYGC 246
           AAE E+R+ENF  EL+ V ADV MAIIADFMLV+LPAPTVSL+PPLA++AG ++KFF+ C
Sbjct: 200 AAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGISKFFHNC 259

Query: 247 PENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLINIRKYFDKSYA 306
           P+NAFQVAL+GTS++LLQR+GA+ RNGAKLFAVG+++S+ GT ITN  I  RK  D++  
Sbjct: 260 PDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKAVDQNSE 319

Query: 307 MEAEDVPVIATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHKLALSAICFAVRTG 366
            E E VP+++TS+ YG+YM+VSSNLRYQI+AGVIEQR+LEP+LH+HKLALSA+CFAVRTG
Sbjct: 320 GEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQHKLALSALCFAVRTG 379

Query: 367 NTFLGSLMWVDFARWTGIQRT 381
           NTFLGSL+WVD+AR  GIQ++
Sbjct: 380 NTFLGSLLWVDYARLIGIQKS 385

[Close]

BLAST of Lcy02g003980 vs. TAIR 10
Match: AT2G40400.1 (Protein of unknown function (DUF399 and DUF3411) )

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-49
Identity = 115/291 (39.52%), Postives = 169/291 (58.08%), Query Frame = 0


Query: 96  NKAEAILVLAKAGRSTESLPKDLAAAIAAGRVPAVIVERFLELEKSAAWRWLLQ-FGGFK 155
           ++AE   V+  AGR  ++LP+D+   +  G V   I++ F +LE+      L Q F GF+
Sbjct: 410 DRAEIARVMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQRFQGFR 469

Query: 156 ERVLADDLFLAKVAMECGVGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWL 215
           ER+LAD  FL ++A+E  + I T   A+ EKRKENF +ELD+V  D + A + DF  VWL
Sbjct: 470 ERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWL 529

Query: 216 PAPTVSLKPPLAISAGP-----LTKFFYGCPENAFQVALAGTSFSLLQRVGAVVRNGAKL 275
           PAPT+S       + GP     L       P+NAFQ +L G  ++L  R+ +V+  G KL
Sbjct: 530 PAPTLSFISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGGLKL 589

Query: 276 FAVGSSASVAGTGITNTLINIRKYFDKSYAM--EAEDVPVIATSIGYGIYMSVSSNLRYQ 335
             VG  +S A  G +N L  IRK+      +  +A+  P++ T++ YG Y+  SSN+RYQ
Sbjct: 590 AGVGVVSSFAAVGSSNALYAIRKFIKPELGVGEQAKRSPMLKTALVYGGYLGTSSNIRYQ 649

Query: 336 ILAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLGSLMWVDFARWTGIQ 379
           I+AG+IE RI +  L    L ++ I F VR  N++ G+  W+D AR TG+Q
Sbjct: 650 IIAGLIEHRISDE-LSSQPLLVNMISFVVRVANSYFGTQQWIDLARSTGLQ 699

[Close]

BLAST of Lcy02g003980 vs. TAIR 10
Match: AT2G40400.2 (Protein of unknown function (DUF399 and DUF3411) )

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-49
Identity = 115/291 (39.52%), Postives = 169/291 (58.08%), Query Frame = 0


Query: 96  NKAEAILVLAKAGRSTESLPKDLAAAIAAGRVPAVIVERFLELEKSAAWRWLLQ-FGGFK 155
           ++AE   V+  AGR  ++LP+D+   +  G V   I++ F +LE+      L Q F GF+
Sbjct: 410 DRAEIARVMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQRFQGFR 469

Query: 156 ERVLADDLFLAKVAMECGVGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWL 215
           ER+LAD  FL ++A+E  + I T   A+ EKRKENF +ELD+V  D + A + DF  VWL
Sbjct: 470 ERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWL 529

Query: 216 PAPTVSLKPPLAISAGP-----LTKFFYGCPENAFQVALAGTSFSLLQRVGAVVRNGAKL 275
           PAPT+S       + GP     L       P+NAFQ +L G  ++L  R+ +V+  G KL
Sbjct: 530 PAPTLSFISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGGLKL 589

Query: 276 FAVGSSASVAGTGITNTLINIRKYFDKSYAM--EAEDVPVIATSIGYGIYMSVSSNLRYQ 335
             VG  +S A  G +N L  IRK+      +  +A+  P++ T++ YG Y+  SSN+RYQ
Sbjct: 590 AGVGVVSSFAAVGSSNALYAIRKFIKPELGVGEQAKRSPMLKTALVYGGYLGTSSNIRYQ 649

Query: 336 ILAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLGSLMWVDFARWTGIQ 379
           I+AG+IE RI +  L    L ++ I F VR  N++ G+  W+D AR TG+Q
Sbjct: 650 IIAGLIEHRISDE-LSSQPLLVNMISFVVRVANSYFGTQQWIDLARSTGLQ 699

[Close]

BLAST of Lcy02g003980 vs. TAIR 10
Match: AT3G56140.1 (Protein of unknown function (DUF399 and DUF3411) )

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-46
Identity = 111/291 (38.14%), Postives = 167/291 (57.39%), Query Frame = 0


Query: 96  NKAEAILVLAKAGRSTESLPKDLAAAIAAGRVPAVIVERFLELEKSAAWRWLLQ-FGGFK 155
           ++AE   V+  AGR  ++LP D+   +  G V   +++   +LE+      L Q F GF+
Sbjct: 419 DRAEIARVMNAAGRRRDALPPDIQNGLDLGLVSPEVLQNLFDLEQYPLISELTQRFQGFR 478

Query: 156 ERVLADDLFLAKVAMECGVGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWL 215
           ER+LAD  FL ++A+E  + I T   A+ EKRKENF +E+D+V  D +   + DF  VWL
Sbjct: 479 ERLLADPKFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWL 538

Query: 216 PAPTVSLKPPLAISAGP-----LTKFFYGCPENAFQVALAGTSFSLLQRVGAVVRNGAKL 275
           PAPT+S       + GP     L       P+NAFQ +LAG  ++L  R+ +V+  G KL
Sbjct: 539 PAPTLSFLSYADETTGPDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIASVIVGGLKL 598

Query: 276 FAVGSSASVAGTGITNTLINIRKYF--DKSYAMEAEDVPVIATSIGYGIYMSVSSNLRYQ 335
             VG  +S A  G +N L   RK    +   A + +  P++ T++ YG ++  S+NLRYQ
Sbjct: 599 AGVGVVSSFAAVGASNALNIARKVIKPELVVAEKPKRSPLLKTAMVYGGFLGTSANLRYQ 658

Query: 336 ILAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLGSLMWVDFARWTGIQ 379
           I+AG+IE R+ +  L    L ++AI F VRT N++ G+  W+D AR TG+Q
Sbjct: 659 IIAGLIEHRLSDE-LSSQPLLVNAISFVVRTLNSYFGTQQWIDLARSTGLQ 708

[Close]

BLAST of Lcy02g003980 vs. TAIR 10
Match: AT5G22790.1 (reticulata-related 1 )

HSP 1 Score: 132.5 bits (332), Expect = 7.2e-31
Identity = 105/334 (31.44%), Postives = 171/334 (51.20%), Query Frame = 0


Query: 64  SSDGIPPGGHGGGGGGGGDGHG-EGEEEEDR-EKNKAEAILVLAKAGRSTE----SLPKD 123
           ++DG   GG+G GGGGGGDG G +GE+E D+ E+ +   IL   +  + TE    +LP+D
Sbjct: 109 NNDGGGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETERRGITLPED 168

Query: 124 LAAAIAAGRVPAVIVERFLELEKSAAWRWLLQF-----GGFKERVLADDLFLAKVAMECG 183
           +  A  +  +  + + R+L+L+ S    W L F        + R+LAD  FL KV  E  
Sbjct: 169 MLEAAKSVGIRKLFLLRYLDLQGSV---WPLGFLMRSCAMLRNRMLADPSFLFKVGTEVA 228

Query: 184 VGIFTKTAAELEKRKENFSKELDFVCADVIMAIIADFMLVWLPAPTVSLKPPLAISAGPL 243
           +     T AE++KR E+F  E +   AD+++ ++ D  LV L AP   +  P   S G  
Sbjct: 229 IDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLF 288

Query: 244 TKFFYGC---PENAFQVALAGTSFSLLQRVGAVVRNGAKLFAVGSSASVAGTGITNTLIN 303
                 C   P + F+    G  FS+ QR+      G    +VG    + G GI N ++ 
Sbjct: 289 KDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMT 348

Query: 304 IRKYFDKSYAMEAEDVPV---IATSIGYGIYMSVSSNLRYQILAGVIEQRILEPLLHKHK 363
            ++   KS     EDVP+     ++  +G+++ +SSN RYQI+ G+  +R++E      +
Sbjct: 349 AKRSVKKS----EEDVPIPPLFESAALWGVFLGLSSNARYQIINGL--ERVVEGSTAAKR 408

Query: 364 LALSAICF--AVRTGNTFLGSLMWVDFARWTGIQ 379
           + + A+ F   VR  N   G + +VD+A+ +G+Q
Sbjct: 409 IPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433

The following BLAST results are available for this feature:

BLAST of Lcy02g003980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CJ5	8.4e-117	59.58	Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9SIY5	1.7e-48	39.52	Protein RETICULATA-RELATED 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q8RWG3	2.9e-45	38.14	Protein RETICULATA-RELATED 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9FGP9	1.0e-29	31.44	Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
B9DFK5	3.0e-29	31.83	Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=...	[more]

BLAST of Lcy02g003980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J072	3.0e-178	88.02	protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F6R6	2.0e-177	87.73	protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0LCC3	4.1e-175	87.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G686720 PE=3 SV=1	[more]
A0A5A7TXM9	4.5e-174	87.27	Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3CG26	4.5e-174	87.27	protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Lcy02g003980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526496.1	7.4e-179	88.31	protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982741.1	6.3e-178	88.02	protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita maxima]	[more]
KAG6581562.1	1.8e-177	87.53	Protein RETICULATA-RELATED 4, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_022934115.1	4.1e-177	87.73	protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita moschata]	[more]
XP_004149738.1	8.5e-175	87.27	protein RETICULATA-RELATED 4, chloroplastic [Cucumis sativus] >KGN58569.1 hypoth...	[more]

BLAST of Lcy02g003980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12470.1	6.0e-118	59.58	Protein of unknown function (DUF3411)	[more]
AT2G40400.1	1.2e-49	39.52	Protein of unknown function (DUF399 and DUF3411)	[more]
AT2G40400.2	1.2e-49	39.52	Protein of unknown function (DUF399 and DUF3411)	[more]
AT3G56140.1	2.1e-46	38.14	Protein of unknown function (DUF399 and DUF3411)	[more]
AT5G22790.1	7.2e-31	31.44	reticulata-related 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 180..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..96
None	No IPR available	PANTHER	PTHR31620	PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED	coord: 29..382
None	No IPR available	PANTHER	PTHR31620:SF8	OS05G0388600 PROTEIN	coord: 29..382
IPR021825	Protein RETICULATA-related	PFAM	PF11891	RETICULATA-like	coord: 155..332 e-value: 2.0E-62 score: 210.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g003980.1	Lcy02g003980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0016021	integral component of membrane