Lcy02g003800 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g003800
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	60S ribosomal protein L44
Location	Chr02: 4983026 .. 4984976 (-)
RNA-Seq Expression	Lcy02g003800
Synteny	Lcy02g003800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTTTTTCGGGCAGGCCTCGTCGACGTCCAGCAGTCATGGTACTCTTCTTCCCTTTCATCTCTCGATGCAATTTCATTAGCTGCTCGTCTTATTTGTTGATTCTCTCACGCTGGTTTGTTCTTCTCTGGAAGTTTGATGTATATTTACTTCTACTCTTGATTCCCTCTGTGTGTATCTGAGTTCTGTGATGGAAAGAGTAAACTGTTGACGCGATTGGTTGCGTTTTGAAAGTTTAGCGTTCCGTGGAGTTTAATGCTGAGCATAGATGATATATATTTGTTAATGGTATCACTTGATCTGGGGTTGTGCATAGAAGTCGAGTGGTTTATCTGTTGTAGTTGAGCTTAGGTTGGCTTAGTTAGGGAGGTGAGAGTATAAGTTCTACTTTGCTAGGTAAAGAGTAGACCATCTGAATCAACTGGCAGCCCGTGGCGTGATCACGTGGATTTGGGAGTATTTTGTGGCACGGACTGTGGCAGGACGAACTAAAGGAATATTAATATTTGTAGTTTATGTTATCTGGGTCATTGATTTGCTTAATATATGATTGCTGCAGATGAACTTTGGAAGGCGTTATTATTGAGTGAGGTCTAATTGTTTCATCCTATATTGCTTAAAAGAAGGGATTTTTCACAAGATAAACGTTGCCCATGGAATGGATTAATGGTTCTGGGGCCTTGATTTTAAGTTATAGAATATTCCGTCTAAAGAAGTTTTAGATCAACGAATAGAAATGCAGTAGTTAAGTAACATATTGGGTTTGCGATGTTTGTGTCTTATTGATATTTCTAGGTTGTAGCATCAGAGTTTAGAAATTGATTGTTGATATTGTAATGGGAAACAGGTAAACGTTCCCAAGACAAAGAAAACTTATTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAACGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGTTAGTTACTTTTAAGTCCAGTCAAATTATTACCTTTTCCTTTCCCGCGAGCCTTTGATCTAAATTGAAATGTCATAAATCTCACAGGCTAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGGTTAGGAAGCAAAGTATTTTATTATTTTCTGTTTATGGCCTCTCTCTATTAGGTATCTGGTTAATTTAATTTTCCAAGGAACTTTTAAAGTGTATAGTGATTCTCAAAATACATATTTAAGGCTGTTGTCATTTGGGTCCAAATAGCACTAATCCATTTACCCCCTTTAAAATAAATACCCATGTGATTATCATGCTTGTGAAGGCAGTGGATTATCTTCAGGGGAGTTTTGTTTTCTCCAATTTTCATGCTCAATATTTGCTTTCAATATCGAACTTGTACTCGGTGCTGCAGTTGAAATAGTTTTGCCTAGCACTTTATTTGTAGTATTTGTTAGCTATTTTTAGTAAACATGCAAGTCCAAATGAGGTAGCCCTAATGTTTAGTTATTATCTGGGTATTGTACCATACCTCCTCATCACATTTCTAAATTGTCAAATGCAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAGACGCATCGTCACTTTTTATCTTTTGTCATTTCTTTTTCACAAGATCATTTGTTATCGGAGTTTTGCAGCATTACTCTGTTTTGTTCAGCAATTAGTTCTACATGTCGGAATTATACTATTTAGCTGAAACTTTCTTATCTTAATTATCGAATTTCCTAATTTTTTATGTTCTTCGTTGAATATGTTTTAGTTTCCATGACGAATCGGTCAATACTTGCCGAATTAATTGAGTCACTATTATCAGATTCTTGAAATTTT

mRNA sequence

AGGGTTTTTCGGGCAGGCCTCGTCGACGTCCAGCAGTCATGGTAAACGTTCCCAAGACAAAGAAAACTTATTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAACGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGGTTAGGAAGCAAAGTATTTTATTATTTTCTGTTTATGGCCTCTCTCTATTAGGTATCTGGTTAATTTAATTTTCCAAGGAACTTTTAAAGTGTATAGTGATTCTCAAAATACATATTTAAGGCTGTTGTCATTTGGGTCCAAATAGCACTAATCCATTTACCCCCTTTAAAATAAATACCCATGTGATTATCATGCTTGTGAAGGCAGTGGATTATCTTCAGGGGAGTTTTGTTTTCTCCAATTTTCATGCTCAATATTTGCTTTCAATATCGAACTTGTACTCGGTGCTGCAGTTGAAATAGTTTTGCCTAGCACTTTATTTGTAGTATTTGTTAGCTATTTTTAGTAAACATGCAAGTCCAAATGAGGTAGCCCTAATGTTTAGTTATTATCTGGGTATTGTACCATACCTCCTCATCACATTTCTAAATTGTCAAATGCAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAGACGCATCGTCACTTTTTATCTTTTGTCATTTCTTTTTCACAAGATCATTTGTTATCGGAGTTTTGCAGCATTACTCTGTTTTGTTCAGCAATTAGTTCTACATGTCGGAATTATACTATTTAGCTGAAACTTTCTTATCTTAATTATCGAATTTCCTAATTTTTTATGTTCTTCGTTGAATATGTTTTAGTTTCCATGACGAATCGGTCAATACTTGCCGAATTAATTGAGTCACTATTATCAGATTCTTGAAATTTT

Coding sequence (CDS)

ATGGTAAACGTTCCCAAGACAAAGAAAACTTATTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAACGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCTAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGGTTAGGAAGCAAAGTATTTTATTATTTTCTGTTTATGGCCTCTCTCTATTAGGTATCTGGTTAATTTAA

Protein sequence

MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKVRKQSILLFSVYGLSLLGIWLI

Homology

[Close]

BLAST of Lcy02g003800 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 87
          KAKTTKKIVLRLQCQGCKHVSQHPIK
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 86

[Close]

BLAST of Lcy02g003800 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 165.2 bits (417), Expect = 4.0e-40
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 87
          KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of Lcy02g003800 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 87
          KAKTTKK+VLRL+C  CK   Q  +K
Sbjct: 61 KAKTTKKVVLRLECTVCKTKHQLALK 86

[Close]

BLAST of Lcy02g003800 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 87
          KAKTTKK+VLRL+C  CK   Q  +K
Sbjct: 61 KAKTTKKVVLRLECTVCKTKHQLALK 86

[Close]

BLAST of Lcy02g003800 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-33
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 87
          KAKTTKK+VLRL+C  CK+  Q  +K
Sbjct: 61 KAKTTKKVVLRLECSVCKYKMQMTLK 86

[Close]

BLAST of Lcy02g003800 vs. ExPASy TrEMBL
Match: A0A0S3S1Y2 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G015400 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 93/107 (86.92%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVRKQSILLFSVYGLSLLGIWL 108
           KAKTTKKIVLRLQCQGCKHVSQHPIKV   + L F V G+  LG++L
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVSVWTTLYFWV-GVFWLGMYL 106

[Close]

BLAST of Lcy02g003800 vs. ExPASy TrEMBL
Match: A0A0D2RJ15 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G210700 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.6e-42
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKVRKQSILL 95
          KAKTTKKIVLRLQCQGCKHVSQHPIKV   ++ L
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKVGASTLRL 94

[Close]

BLAST of Lcy02g003800 vs. ExPASy TrEMBL
Match: A0A059BG29 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.9e-42
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKVR 89
          KAKTTKKIVLRLQCQGCKHVSQHPIKV+
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKVQ 88

[Close]

BLAST of Lcy02g003800 vs. ExPASy TrEMBL
Match: A0A0D2S9Q7 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G070100 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.9e-42
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 29  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 88

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVR 89
           KAKTTKKIVLRLQCQGCKHVSQHPIKV+
Sbjct: 89  KAKTTKKIVLRLQCQGCKHVSQHPIKVQ 116

[Close]

BLAST of Lcy02g003800 vs. ExPASy TrEMBL
Match: A0A0D2TMG0 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G133600 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.9e-42
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 68  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 127

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVR 89
           KAKTTKKIVLRLQCQGCKHVSQHPIKV+
Sbjct: 128 KAKTTKKIVLRLQCQGCKHVSQHPIKVQ 155

[Close]

BLAST of Lcy02g003800 vs. NCBI nr
Match: BAT86836.1 (hypothetical protein VIGAN_05015400 [Vigna angularis var. angularis])

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-42
Identity = 93/107 (86.92%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVRKQSILLFSVYGLSLLGIWL 108
           KAKTTKKIVLRLQCQGCKHVSQHPIKV   + L F V G+  LG++L
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVSVWTTLYFWV-GVFWLGMYL 106

[Close]

BLAST of Lcy02g003800 vs. NCBI nr
Match: KJB31844.1 (hypothetical protein B456_005G210700 [Gossypium raimondii])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKVRKQSILL 95
          KAKTTKKIVLRLQCQGCKHVSQHPIKV   ++ L
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKVGASTLRL 94

[Close]

BLAST of Lcy02g003800 vs. NCBI nr
Match: KCW65063.1 (hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis] >KJB49985.1 hypothetical protein B456_008G148400 [Gossypium raimondii] >CAA2977523.1 60S ribosomal L44 [Olea europaea subsp. europaea])

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-41
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKVR 89
          KAKTTKKIVLRLQCQGCKHVSQHPIKV+
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKVQ 88

[Close]

BLAST of Lcy02g003800 vs. NCBI nr
Match: KJB76838.1 (hypothetical protein B456_012G133600 [Gossypium raimondii])

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-41
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 68  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 127

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVR 89
           KAKTTKKIVLRLQCQGCKHVSQHPIKV+
Sbjct: 128 KAKTTKKIVLRLQCQGCKHVSQHPIKVQ 155

[Close]

BLAST of Lcy02g003800 vs. NCBI nr
Match: KJB79862.1 (hypothetical protein B456_013G070100 [Gossypium raimondii])

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-41
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 29  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 88

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVR 89
           KAKTTKKIVLRLQCQGCKHVSQHPIKV+
Sbjct: 89  KAKTTKKIVLRLQCQGCKHVSQHPIKVQ 116

[Close]

BLAST of Lcy02g003800 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 87
          KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of Lcy02g003800 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 87
          KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]

BLAST of Lcy02g003800 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-41
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIK 87
          KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIK 86

The following BLAST results are available for this feature:

BLAST of Lcy02g003800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	1.0e-43	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	4.0e-40	91.86	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
P0CQ51	1.6e-33	80.23	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	1.6e-33	80.23	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
O59870	2.1e-33	79.07	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]

BLAST of Lcy02g003800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S3S1Y2	1.5e-42	86.92	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]
A0A0D2RJ15	7.6e-42	93.62	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G210700 PE=3 ...	[more]
A0A059BG29	9.9e-42	98.86	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV...	[more]
A0A0D2S9Q7	9.9e-42	98.86	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G070100 PE=3 ...	[more]
A0A0D2TMG0	9.9e-42	98.86	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G133600 PE=3 ...	[more]

BLAST of Lcy02g003800 vs. NCBI nr


Match Name	E-value	Identity	Description
BAT86836.1	3.1e-42	86.92	hypothetical protein VIGAN_05015400 [Vigna angularis var. angularis]	[more]
KJB31844.1	1.6e-41	93.62	hypothetical protein B456_005G210700 [Gossypium raimondii]	[more]
KCW65063.1	2.0e-41	98.86	hypothetical protein EUGRSUZ_G02575 [Eucalyptus grandis] >KJB49985.1 hypothetica...	[more]
KJB76838.1	2.0e-41	98.86	hypothetical protein B456_012G133600 [Gossypium raimondii]	[more]
KJB79862.1	2.0e-41	98.86	hypothetical protein B456_013G070100 [Gossypium raimondii]	[more]

BLAST of Lcy02g003800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	2.8e-41	91.86	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	2.8e-41	91.86	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	2.8e-41	91.86	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 19..86 e-value: 6.8E-30 score: 103.4
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 1..95
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 63..74
None	No IPR available	GENE3D	3.10.450.80		coord: 1..94 e-value: 2.3E-43 score: 149.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..56
None	No IPR available	PANTHER	PTHR10369:SF40	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 1..95
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 2..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g003800.1	Lcy02g003800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0003735	structural constituent of ribosome