Lcy02g003360 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g003360
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor UPBEAT1
Location	Chr02: 4452915 .. 4453208 (+)
RNA-Seq Expression	Lcy02g003360
Synteny	Lcy02g003360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTTGGGCTCGAGAACATAGCGACGACTCTGATGATCGAGTTTCGGACAGGCGAATCGTAAAACAAGTCGAGATCAGGAAGCAACCGACGGCGTCGAGGTCGAGGTCGAGGTCGGAGAAGAGGGCTTGCTTTAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAAACTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTGAATGGCTCTGATGAATGA

mRNA sequence

ATGGAAGTTTGGGCTCGAGAACATAGCGACGACTCTGATGATCGAGTTTCGGACAGGCGAATCGTAAAACAAGTCGAGATCAGGAAGCAACCGACGGCGTCGAGGTCGAGGTCGAGGTCGGAGAAGAGGGCTTGCTTTAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAAACTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTGAATGGCTCTGATGAATGA

Coding sequence (CDS)

ATGGAAGTTTGGGCTCGAGAACATAGCGACGACTCTGATGATCGAGTTTCGGACAGGCGAATCGTAAAACAAGTCGAGATCAGGAAGCAACCGACGGCGTCGAGGTCGAGGTCGAGGTCGGAGAAGAGGGCTTGCTTTAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAAACTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTGAATGGCTCTGATGAATGA

Protein sequence

MEVWAREHSDDSDDRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

Homology

[Close]

BLAST of Lcy02g003360 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-08
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 19 RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETME-LNGLFRETADYIVW 78
          R +VK++ IR  P  S   SR   RA  +R++ L++++P ++T E L+GLFR+TADYI+ 
Sbjct: 24 RALVKKIMIR--PRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILA 83

Query: 79 LQMKVRMMQALVHVL 93
          L+MKV++MQ +V VL
Sbjct: 84 LEMKVKVMQTMVQVL 96

[Close]

BLAST of Lcy02g003360 vs. ExPASy TrEMBL
Match: A0A0A0L8J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.2e-26
Identity = 67/84 (79.76%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 14 DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETAD 73
          D VSDRRI KQV  +K    SRS   SEKR C KRIRRL+KM+PKSE+MELNGLFRETAD
Sbjct: 7  DTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETAD 66

Query: 74 YIVWLQMKVRMMQALVHVLNGSDE 98
          YIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 67 YIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of Lcy02g003360 vs. ExPASy TrEMBL
Match: A0A5A7T9M0 (Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00560 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25
Identity = 67/84 (79.76%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 14 DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETAD 73
          D VSDRRI KQV  +K    SR    SEKR C KRIR+LRKMIPKSE+MELNGLFRETAD
Sbjct: 7  DTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETAD 66

Query: 74 YIVWLQMKVRMMQALVHVLNGSDE 98
          YIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 67 YIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of Lcy02g003360 vs. ExPASy TrEMBL
Match: A0A4V5ZXB7 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.6e-09
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 47  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 98
           +R+R L+K+IP SE+M L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Sbjct: 68  RRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRVRVMQIMVKVLTGSDD 118

[Close]

BLAST of Lcy02g003360 vs. ExPASy TrEMBL
Match: B9GSV5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 14  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFK------------------RIRRLRKM 73
           ++VS+ +  ++  +R+Q     +RS+   R   K                  R+R L+K+
Sbjct: 35  NKVSEAQTKRRCPLRRQKNGRHARSKRPGRILMKRRARAEGSTVRSGYGIERRVRTLKKL 94

Query: 74  IPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 98
           IP SE+M L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 95  IPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of Lcy02g003360 vs. ExPASy TrEMBL
Match: A0A2C9VSB7 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G013600 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 19  RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWL 78
           RR+++    R + ++SR+ +        +R+R L+K++P SE+  L GLFR+TADYI+ L
Sbjct: 35  RRVLRNRRTRLEGSSSRAAN-----GIHRRVRTLKKLVPNSESKGLEGLFRDTADYILSL 94

Query: 79  QMKVRMMQALVHVLNGSDE 98
           QM+V++MQ +V VL GSDE
Sbjct: 95  QMRVKVMQIMVKVLTGSDE 108

[Close]

BLAST of Lcy02g003360 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_017541 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 67/84 (79.76%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 14 DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETAD 73
          D VSDRRI KQV  +K    SRS   SEKR C KRIRRL+KM+PKSE+MELNGLFRETAD
Sbjct: 7  DTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETAD 66

Query: 74 YIVWLQMKVRMMQALVHVLNGSDE 98
          YIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 67 YIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of Lcy02g003360 vs. NCBI nr
Match: KAA0038125.1 (basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic helix-loop-helix protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 67/84 (79.76%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 14 DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETAD 73
          D VSDRRI KQV  +K    SR    SEKR C KRIR+LRKMIPKSE+MELNGLFRETAD
Sbjct: 7  DTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGLFRETAD 66

Query: 74 YIVWLQMKVRMMQALVHVLNGSDE 98
          YIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 67 YIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of Lcy02g003360 vs. NCBI nr
Match: XP_034911859.1 (transcription factor UPBEAT1-like [Populus alba] >TKR59225.1 hypothetical protein D5086_0000325720 [Populus alba])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 47  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 98
           +R+R L+K+IP SE+M L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Sbjct: 68  RRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRVRVMQIMVKVLTGSDD 118

[Close]

BLAST of Lcy02g003360 vs. NCBI nr
Match: KAG6787023.1 (hypothetical protein POTOM_008650 [Populus tomentosa])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 47  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 98
           +R+R L+K+IP SE+M L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Sbjct: 68  RRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRVRVMQIMVKVLTGSDD 118

[Close]

BLAST of Lcy02g003360 vs. NCBI nr
Match: XP_021654625.1 (transcription factor UPBEAT1 [Hevea brasiliensis])

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 15  RVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADY 74
           RVS ++  ++V I       RSRS++       R+R L+K+IP SE+  L GLFRETADY
Sbjct: 42  RVSRKKRSRKVSINSGTRQERSRSKA-ANGIRGRVRTLKKLIPNSESAGLEGLFRETADY 101

Query: 75  IVWLQMKVRMMQALVHVLNGSDE 98
           I+ LQM+V++MQ +V VL GSDE
Sbjct: 102 ILSLQMRVKVMQIMVKVLTGSDE 123

[Close]

BLAST of Lcy02g003360 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 19 RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETME-LNGLFRETADYIVW 78
          R +VK++ IR  P  S   SR   RA  +R++ L++++P ++T E L+GLFR+TADYI+ 
Sbjct: 24 RALVKKIMIR--PRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILA 83

Query: 79 LQMKVRMMQALVHVL 93
          L+MKV++MQ +V VL
Sbjct: 84 LEMKVKVMQTMVQVL 96

The following BLAST results are available for this feature:

BLAST of Lcy02g003360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	2.1e-08	46.67	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of Lcy02g003360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6	5.2e-26	79.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
A0A5A7T9M0	2.0e-25	79.76	Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A4V5ZXB7	7.6e-09	64.71	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1	[more]
B9GSV5	3.8e-08	39.22	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 ...	[more]
A0A2C9VSB7	3.8e-08	44.30	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G013600 PE=4 SV=...	[more]

BLAST of Lcy02g003360 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58133.1	1.1e-25	79.76	hypothetical protein Csa_017541 [Cucumis sativus]	[more]
KAA0038125.1	4.1e-25	79.76	basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic heli...	[more]
XP_034911859.1	1.6e-08	64.71	transcription factor UPBEAT1-like [Populus alba] >TKR59225.1 hypothetical protei...	[more]
KAG6787023.1	1.6e-08	64.71	hypothetical protein POTOM_008650 [Populus tomentosa]	[more]
XP_021654625.1	2.0e-08	49.40	transcription factor UPBEAT1 [Hevea brasiliensis]	[more]

BLAST of Lcy02g003360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	1.5e-09	46.67	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 16..94
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 16..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g003360.1	Lcy02g003360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated