Lcy02g002760 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g002760
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Sphingolipid delta(4)-desaturase DES1-like
Location	Chr02: 3783766 .. 3784804 (-)
RNA-Seq Expression	Lcy02g002760
Synteny	Lcy02g002760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGAGTTGAAGAGAGAGATGAGGTCGTAATGGCCGCCGACTTCTTCTTGTCATATACCGATGAGCCTCATGCTTCAAGGAGACACCAAATCCCCTCTCAATACCCTCAGATTCGGGAGCTCTTCGGTCCTGACCTGTGGGCTTTCTTTAAGGTTTCATTTCTTCTTTTGATTTTACTGGTTTGTGTGTGGCTGATTCTAAGAATGTGGAGAGTTGTGGTTTTCTCCTTGCTTGAATCATGAGCATTTGTCTGAAGTTTCCTCTGTTTTTGCAACTGGGGCCAGCTTTGATTCAGGATTGTTTTGGTTTAAAAATTATTTAAAGTTACCATTCTTTTTCTTATTTCGAATTTAAAAGAATGTCGTGGAAGAAATAGAACTTTACCCATTTTTACTATGGATTGGAAAAGTTTTGTGGTCCTCAAAGAATCGTGTTGTTTGTGCAACAATTTCATGTCTTCTTTTGTTGGACTTATCTAAATTTTTGGTAAATGCGGAAGTTTAAATGCCTATAAATTTACTATTGAGATTCTGTATAGAATTCCTTACTCAAATATCTGATTTTAGCAGACGTTTAATTGCAATTTAGGGCCTGTATAGTTTCAAATGAAACCATTCATGTTATAAAAAAAAAATATCCCTAAGGTTAAATTTTTAGGCTGCTGTTGACTAGGGAGGACTGATTTTTTGATTGTTGGCTGTATTTGTGGAGAAGAGCAGAATGATTGTACTTATTTAACGAACTGCATTAGCATTTTGATTAATCTGATCAGAAAGTAAAGTCATGAAGAATGAGAAATTGGAGTGGACAAGTATTTATGAAGAGTTAGTTCAGAATGTTATATTTTGGGTCATTTGCCCAAAATTCAATTTCTACATTCTGCTTTCTTTATGAACTCTGCATTCATTCTGCTTCTTTTCATCCTTTTGTGTTCTTTATATCCAGACATGGGGAAGATTGATAGTGGGGGGAGTGCATGTTTTGGAAAGCAGGATGGTGGAAACAACACTTTGTTTCATGTCTGAGGAAGCCTAA

mRNA sequence

ATGACAGGAGTTGAAGAGAGAGATGAGGTCGTAATGGCCGCCGACTTCTTCTTGTCATATACCGATGAGCCTCATGCTTCAAGGAGACACCAAATCCCCTCTCAATACCCTCAGATTCGGGAGCTCTTCGGTCCTGACCTGTGGGCTTTCTTTAAGACATGGGGAAGATTGATAGTGGGGGGAGTGCATGTTTTGGAAAGCAGGATGGTGGAAACAACACTTTGTTTCATGTCTGAGGAAGCCTAA

Coding sequence (CDS)

ATGACAGGAGTTGAAGAGAGAGATGAGGTCGTAATGGCCGCCGACTTCTTCTTGTCATATACCGATGAGCCTCATGCTTCAAGGAGACACCAAATCCCCTCTCAATACCCTCAGATTCGGGAGCTCTTCGGTCCTGACCTGTGGGCTTTCTTTAAGACATGGGGAAGATTGATAGTGGGGGGAGTGCATGTTTTGGAAAGCAGGATGGTGGAAACAACACTTTGTTTCATGTCTGAGGAAGCCTAA

Protein sequence

MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFKTWGRLIVGGVHVLESRMVETTLCFMSEEA

Homology

[Close]

BLAST of Lcy02g002760 vs. ExPASy Swiss-Prot
Match: Q9ZPH4 (Sphingolipid delta(4)-desaturase DES1-like OS=Arabidopsis thaliana OX=3702 GN=At4g04930 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.8e-14
Identity = 37/48 (77.08%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 5  EERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          EE  E VMA DFF SYTDEPHASRR QI S YPQIR+LFGPD WAF K
Sbjct: 13 EEEREGVMATDFFWSYTDEPHASRRRQILSCYPQIRQLFGPDPWAFLK 60

[Close]

BLAST of Lcy02g002760 vs. ExPASy Swiss-Prot
Match: Q6H5U3 (Sphingolipid delta(4)-desaturase DES1-like OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0639600 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.5e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 3  GVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          G    +E VMA DFF SYTDEPHA+RR +I +++PQI+ELFGPD  AF K
Sbjct: 6  GDGREEEGVMATDFFWSYTDEPHATRRREILAKHPQIKELFGPDPLAFLK 55

[Close]

BLAST of Lcy02g002760 vs. ExPASy Swiss-Prot
Match: O44186 (Putative sphingolipid delta(4)-desaturase OS=Caenorhabditis elegans OX=6239 GN=F33D4.4 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-05
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 15 DFFLSYTDEPHASRRHQIPSQYPQIRELFGPD 47
          DF  +YT+EPHASRR +I ++YPQI+ELFG D
Sbjct: 10 DFSWAYTEEPHASRRKEILAKYPQIKELFGQD 41

[Close]

BLAST of Lcy02g002760 vs. ExPASy TrEMBL
Match: A0A6J1EFX3 (Sphingolipid delta(4)-desaturase DES1-like OS=Cucurbita moschata OX=3662 GN=LOC111433967 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.0e-16
Identity = 44/52 (84.62%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          M G EERDE VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 1  MRGGEERDEGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. ExPASy TrEMBL
Match: A0A0A0LSB9 (Sphingolipid delta(4)-desaturase DES1-like OS=Cucumis sativus OX=3659 GN=Csa_1G073750 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          M G EERD+ VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 1  MPGGEERDDGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. ExPASy TrEMBL
Match: A0A6J1CEI0 (Sphingolipid delta(4)-desaturase DES1-like OS=Momordica charantia OX=3673 GN=LOC111010944 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-15
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          M+G EER E VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 1  MSGGEERAEGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. ExPASy TrEMBL
Match: A0A6J1K2T6 (Sphingolipid delta(4)-desaturase DES1-like OS=Cucurbita maxima OX=3661 GN=LOC111490149 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 42/48 (87.50%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 5  EERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          EERDE VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 5  EERDEGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. ExPASy TrEMBL
Match: A0A6J1GTF2 (Sphingolipid delta(4)-desaturase DES1-like OS=Cucurbita moschata OX=3662 GN=LOC111457308 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 42/48 (87.50%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 5  EERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          EERDE VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 5  EERDEGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. NCBI nr
Match: KAG6584001.1 (Sphingolipid delta(4)-desaturase DES1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 44/52 (84.62%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
           M G EERDE VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 426 MRGGEERDEGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 477

[Close]

BLAST of Lcy02g002760 vs. NCBI nr
Match: XP_022927006.1 (sphingolipid delta(4)-desaturase DES1-like [Cucurbita moschata] >XP_022927007.1 sphingolipid delta(4)-desaturase DES1-like [Cucurbita moschata] >KAG7019623.1 Sphingolipid delta(4)-desaturase DES1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 44/52 (84.62%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          M G EERDE VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 1  MRGGEERDEGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. NCBI nr
Match: XP_038893930.1 (sphingolipid delta(4)-desaturase DES1-like [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 44/52 (84.62%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          M G EERDE VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 1  MQGGEERDEGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. NCBI nr
Match: XP_004146595.1 (sphingolipid delta(4)-desaturase DES1-like [Cucumis sativus] >KGN64668.1 hypothetical protein Csa_014335 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.2e-15
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          M G EERD+ VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 1  MPGGEERDDGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. NCBI nr
Match: XP_022140225.1 (sphingolipid delta(4)-desaturase DES1-like [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-15
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MTGVEERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          M+G EER E VMA DFF SYTDEPHASRR QI SQYPQIRELFGPD WAFFK
Sbjct: 1  MSGGEERAEGVMATDFFWSYTDEPHASRRRQILSQYPQIRELFGPDPWAFFK 52

[Close]

BLAST of Lcy02g002760 vs. TAIR 10
Match: AT4G04930.1 (fatty acid desaturase family protein )

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-15
Identity = 37/48 (77.08%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 5  EERDEVVMAADFFLSYTDEPHASRRHQIPSQYPQIRELFGPDLWAFFK 53
          EE  E VMA DFF SYTDEPHASRR QI S YPQIR+LFGPD WAF K
Sbjct: 13 EEEREGVMATDFFWSYTDEPHASRRRQILSCYPQIRQLFGPDPWAFLK 60

The following BLAST results are available for this feature:

BLAST of Lcy02g002760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPH4	4.8e-14	77.08	Sphingolipid delta(4)-desaturase DES1-like OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q6H5U3	6.5e-11	62.00	Sphingolipid delta(4)-desaturase DES1-like OS=Oryza sativa subsp. japonica OX=39...	[more]
O44186	1.1e-05	65.63	Putative sphingolipid delta(4)-desaturase OS=Caenorhabditis elegans OX=6239 GN=F...	[more]

BLAST of Lcy02g002760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFX3	7.0e-16	84.62	Sphingolipid delta(4)-desaturase DES1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A0A0LSB9	1.6e-15	82.69	Sphingolipid delta(4)-desaturase DES1-like OS=Cucumis sativus OX=3659 GN=Csa_1G0...	[more]
A0A6J1CEI0	3.5e-15	82.69	Sphingolipid delta(4)-desaturase DES1-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1K2T6	5.9e-15	87.50	Sphingolipid delta(4)-desaturase DES1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GTF2	5.9e-15	87.50	Sphingolipid delta(4)-desaturase DES1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Lcy02g002760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584001.1	1.4e-15	84.62	Sphingolipid delta(4)-desaturase DES1-like protein, partial [Cucurbita argyrospe...	[more]
XP_022927006.1	1.4e-15	84.62	sphingolipid delta(4)-desaturase DES1-like [Cucurbita moschata] >XP_022927007.1 ...	[more]
XP_038893930.1	1.4e-15	84.62	sphingolipid delta(4)-desaturase DES1-like [Benincasa hispida]	[more]
XP_004146595.1	3.2e-15	82.69	sphingolipid delta(4)-desaturase DES1-like [Cucumis sativus] >KGN64668.1 hypothe...	[more]
XP_022140225.1	7.2e-15	82.69	sphingolipid delta(4)-desaturase DES1-like [Momordica charantia]	[more]

BLAST of Lcy02g002760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04930.1	3.4e-15	77.08	fatty acid desaturase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013866	Sphingolipid delta4-desaturase, N-terminal	SMART	SM01269	Lipid_DES_2	coord: 11..49 e-value: 4.0E-13 score: 59.6
IPR013866	Sphingolipid delta4-desaturase, N-terminal	PFAM	PF08557	Lipid_DES	coord: 14..48 e-value: 6.9E-15 score: 54.3
None	No IPR available	PANTHER	PTHR12879	SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2	coord: 3..53
None	No IPR available	PANTHER	PTHR12879:SF17	SPHINGOLIPID DELTA(4)-DESATURASE DES1-LIKE	coord: 3..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g002760.1	Lcy02g002760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046513	ceramide biosynthetic process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0042284	sphingolipid delta-4 desaturase activity