Lcy02g001920 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g001920
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr02: 2626086 .. 2626828 (-)
RNA-Seq ExpressionLcy02g001920
SyntenyLcy02g001920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTTCTCAAACATCTTCATCTCCAATCTCATTTTCATGAAGCATTCTTCAAACACCGGAGCTGCAACGGCGGCAGCGGTGGCGACGGGGACGGTAATGGCTATCCTAGTCTTGACACTAAGTGCAAGCAACTGCAATGCTGCTTCTCTAAGTCCTTCCAGTTTCGGCAACGAGACCGACGACGCCGCTGCGACATCGATGTGGTGCAACAGTCACACCGAAGAATGCCTTGTCGGAGAAGACGACGTCGGCGACTACTCAGCATTTCCGAGCCTTGCAGCCAAGCAGATTAAGTTCAGTGGGCGGACTGGAGATAGAAGCAAGCCAATATGTGATCGGCCAGGAAGATATGACTGTCTTGGCTCGAAAGGCAATATCCCCAAGGCAGAAACTAATAGCCCATATAAACGCAGGTAGCTGGCTAAGCTGCCATAGTAATTAGAAGGGGAAGGTCGTCCATATCGACATGTCGTCTCTGCCAGTTGCTCTTGTGTGTTATCTACTAGCTTTTGCTTTACTTGATGTGTTCGTTTGAATTTATCATCTAAATCATTTTTACTTTCTTCACCTTCAAATGAAACTTCAATGTTGTTCTACAAATTATATTTATTTGCTATTTAGATGGGAAAATGACATAAAAGGGGGCTAAACTAAAAGATGATATAGGGAATATATTGGTTAAATTATATCAAAAATACCCCTGAATTACGGGTTGGTTTCCATTATACTCCTGAACTTTCAA

mRNA sequence

AGCCTTCTCAAACATCTTCATCTCCAATCTCATTTTCATGAAGCATTCTTCAAACACCGGAGCTGCAACGGCGGCAGCGGTGGCGACGGGGACGGTAATGGCTATCCTAGTCTTGACACTAAGTGCAAGCAACTGCAATGCTGCTTCTCTAAGTCCTTCCAGTTTCGGCAACGAGACCGACGACGCCGCTGCGACATCGATGTGGTGCAACAGTCACACCGAAGAATGCCTTGTCGGAGAAGACGACGTCGGCGACTACTCAGCATTTCCGAGCCTTGCAGCCAAGCAGATTAAGTTCAGTGGGCGGACTGGAGATAGAAGCAAGCCAATATGTGATCGGCCAGGAAGATATGACTGTCTTGGCTCGAAAGGCAATATCCCCAAGGCAGAAACTAATAGCCCATATAAACGCAGGTAGCTGGCTAAGCTGCCATAGTAATTAGAAGGGGAAGGTCGTCCATATCGACATGTCGTCTCTGCCAGTTGCTCTTGTGTGTTATCTACTAGCTTTTGCTTTACTTGATGTGTTCGTTTGAATTTATCATCTAAATCATTTTTACTTTCTTCACCTTCAAATGAAACTTCAATGTTGTTCTACAAATTATATTTATTTGCTATTTAGATGGGAAAATGACATAAAAGGGGGCTAAACTAAAAGATGATATAGGGAATATATTGGTTAAATTATATCAAAAATACCCCTGAATTACGGGTTGGTTTCCATTATACTCCTGAACTTTCAA

Coding sequence (CDS)

ATGAAGCATTCTTCAAACACCGGAGCTGCAACGGCGGCAGCGGTGGCGACGGGGACGGTAATGGCTATCCTAGTCTTGACACTAAGTGCAAGCAACTGCAATGCTGCTTCTCTAAGTCCTTCCAGTTTCGGCAACGAGACCGACGACGCCGCTGCGACATCGATGTGGTGCAACAGTCACACCGAAGAATGCCTTGTCGGAGAAGACGACGTCGGCGACTACTCAGCATTTCCGAGCCTTGCAGCCAAGCAGATTAAGTTCAGTGGGCGGACTGGAGATAGAAGCAAGCCAATATGTGATCGGCCAGGAAGATATGACTGTCTTGGCTCGAAAGGCAATATCCCCAAGGCAGAAACTAATAGCCCATATAAACGCAGGTAG

Protein sequence

MKHSSNTGAATAAAVATGTVMAILVLTLSASNCNAASLSPSSFGNETDDAAATSMWCNSHTEECLVGEDDVGDYSAFPSLAAKQIKFSGRTGDRSKPICDRPGRYDCLGSKGNIPKAETNSPYKRR
Homology
BLAST of Lcy02g001920 vs. ExPASy TrEMBL
Match: A0A0A0LA12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.1e-11
Identity = 55/118 (46.61%), Postives = 70/118 (59.32%), Query Frame = 0

Query: 1   MKHSSNTGAATAAAVATGTV---MAILVLTLSASNCNAASLSPSSFGNETDDAAATSMWC 60
           M HSSNT  + A    T  V   + ++V T+ AS+C AASL+ S+ GNET  AA +S WC
Sbjct: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWC 60

Query: 61  NSHTEECLVG-EDDVGDYSAFPSLAAKQIKFSGRTGDRSKPICDRPGRYD---CLGSK 112
           NS  +ECL+G EDD  + SAFPSL       + RT +  K +C R GRYD   CL  K
Sbjct: 61  NSLDKECLIGVEDDNIETSAFPSLYN-----TVRTANGQKAVCGRVGRYDNQRCLPQK 112

BLAST of Lcy02g001920 vs. ExPASy TrEMBL
Match: A0A0A0KY59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 0

Query: 10  ATAAAVATGTVMAILVLTLSASN-CNAASLSPSSFGNETDDAAATSMWCNSHTEECLVGE 69
           ATAAA +T T M IL+LTL+ S+ CNAAS+ PS+F NET  A  ++++CN   ++C   E
Sbjct: 2   ATAAAPST-TAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 61

Query: 70  DDVGDYSAFPSLAAKQIKFSGRTGDRSKPICDR--PGRY-DCLGSKGNIPKAETNSPYKR 126
           ++   Y + P           RTG R+  +C R   G Y  C+ ++G+    +  S Y R
Sbjct: 62  ENGIHYYSTP-----------RTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDR 109

BLAST of Lcy02g001920 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-15
Identity = 61/127 (48.03%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 1   MKHSSNTGAATAAAVATGTVMAILVLTLSASNCNAASLSPSSFGNETDDAAATSMWCNSH 60
           M HSSN+GA  AAA A    M + +L LS S+C+ AS +PSS+GN T  AAA SMWC+  
Sbjct: 1   MGHSSNSGAVMAAAAA--AAMGVFILMLSGSHCSVASPTPSSYGNIT-VAAAASMWCDGR 60

Query: 61  TEECLVGEDDVGDYSAFPSLAAKQIKF-SGRTGDRSKPICDRPGRY-DCLGSKGNIPKAE 120
            EEC+  EDD    SAFPSL A   KF S  T +R+KP+C+RPG Y  C  ++    K +
Sbjct: 61  VEECVTREDD--GESAFPSLLASTPKFISFPTRNRNKPVCERPGDYKSCFNARRTNTKND 120

Query: 121 TNSPYKR 126
               Y R
Sbjct: 121 NCGTYGR 122

BLAST of Lcy02g001920 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 12 AAAVATGTVMAILVLTLSASNCNAASLSPSSFGNETDDAAATSMWCNSHTEECLVGEDDV 71
          AAA     V AI+VLTL+ASN NAASLS S+FGNET DA A S WC+  TEECLVG+DDV
Sbjct: 2  AAAAMMAAVAAIVVLTLAASNGNAASLSRSNFGNET-DAGAPSTWCDRRTEECLVGDDDV 61

Query: 72 GDYSAFPSLAAKQI-KFSGRTGDRSKP 98
           D S F SLA   + + SGRTG+ ++P
Sbjct: 62 -DGSDFLSLAFVDVSRISGRTGNENRP 86

BLAST of Lcy02g001920 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 0

Query: 1   MKHSSNTGAATAAAVATGTVMAILVLTLSASNCNAASLSPSSFGNETDDAAATSMWCNSH 60
           M HSSN+G   AAA      M + +L LS S+CN AS +PSS+GN T  AAA SMWC+  
Sbjct: 1   MGHSSNSGGVMAAA-----AMGVFILVLSGSDCNVASPTPSSYGNNT-VAAAASMWCDGR 60

Query: 61  TEECLVGEDDVGDYSAFPSLAAKQIKF-SGRTGDRSKPICDRPGRY-DCLGSKGNIPKAE 120
            EEC+  E D    SAFPSL     K+ S  + + +K +C+RP  Y  C   + + P   
Sbjct: 61  VEECVTREGD--SASAFPSLQTSTRKYISPSSVNSNKAVCERPDEYRSCFNPRRSNPNPN 119

Query: 121 TNSPYKR 126
               Y R
Sbjct: 121 NCGRYTR 119

BLAST of Lcy02g001920 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_009509 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-10
Identity = 55/118 (46.61%), Postives = 70/118 (59.32%), Query Frame = 0

Query: 1   MKHSSNTGAATAAAVATGTV---MAILVLTLSASNCNAASLSPSSFGNETDDAAATSMWC 60
           M HSSNT  + A    T  V   + ++V T+ AS+C AASL+ S+ GNET  AA +S WC
Sbjct: 1   MPHSSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWC 60

Query: 61  NSHTEECLVG-EDDVGDYSAFPSLAAKQIKFSGRTGDRSKPICDRPGRYD---CLGSK 112
           NS  +ECL+G EDD  + SAFPSL       + RT +  K +C R GRYD   CL  K
Sbjct: 61  NSLDKECLIGVEDDNIETSAFPSLYN-----TVRTANGQKAVCGRVGRYDNQRCLPQK 112

BLAST of Lcy02g001920 vs. NCBI nr
Match: KGN53789.1 (hypothetical protein Csa_015152 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 0

Query: 10  ATAAAVATGTVMAILVLTLSASN-CNAASLSPSSFGNETDDAAATSMWCNSHTEECLVGE 69
           ATAAA +T T M IL+LTL+ S+ CNAAS+ PS+F NET  A  ++++CN   ++C   E
Sbjct: 2   ATAAAPST-TAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 61

Query: 70  DDVGDYSAFPSLAAKQIKFSGRTGDRSKPICDR--PGRY-DCLGSKGNIPKAETNSPYKR 126
           ++   Y + P           RTG R+  +C R   G Y  C+ ++G+    +  S Y R
Sbjct: 62  ENGIHYYSTP-----------RTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDR 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LA128.1e-1146.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1[more]
A0A0A0KY595.1e-0537.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6607070.11.7e-1548.03hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607014.11.4e-1260.92Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6607071.11.5e-1141.73hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57814.11.7e-1046.61hypothetical protein Csa_009509 [Cucumis sativus][more]
KGN53789.11.0e-0437.50hypothetical protein Csa_015152 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g001920.1Lcy02g001920.1mRNA