Lcy02g001740 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g001740
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	THO complex subunit 4D-like
Location	Chr02: 2353584 .. 2366324 (+)
RNA-Seq Expression	Lcy02g001740
Synteny	Lcy02g001740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGAAGAAAAAAAGGTTCGATGAAAAAAATATCGTCGTCTTAGTCCCGAAGGAAAAGTCTCTCTCAGGCCCCCGCCGCCGCAGCCGCAGCCGCCGCCTCTCGCCTGAAGAATCTCTGTTTCTCTCGTACAAGCCCTAAAAATCCCACACGCACGTACCGCTTTCCGTCATCATCCCTTCGGAAATCCTCTCCTTGATCTTGTTGAAATCTTTATCTTCTCTCTCTCTTTCTCCCTCGGAAGTTCGACCGACCGTTTCTAGGGATCATCTTCAGGTAACTTTTATTCCTCGCTTTCCGTTTTTTTTGAACTTCATTTACGTGGATTTGTTATGGCGTTATACTGTTCGATTATTTGTCAATCGGAGTCTTGAATGGGGATGTTTTTGTTTCCTGAGAAGACGTTTATACGAATATGAATGATGTTGTGTGATTATAGATCTTGAAAGTGTTGAAGTCGAGTGAGAATGTGATTTCTTGTTTCCTGCATAAAATGTTTCGTTACTATTTATCGTTCTATGTGCTCTTTTTTGGCTTTTGGGTTTTAGATATTATTTTAACAAGTGGTGGTGAATATAGATATTATTTTAGCTCTTGGTTGCTTATTTTCTTTCGTATGCTCATATTTCCTGCTTTTGGGTTTTAGATCTGAAATCGGAAGTTAACTGGACTCAGGACCGTCTTATTATAATCTGACTACTTATGGGCGTGGATATTGGAGTTGGAATAATCATTGACTGGCGTTTTTTGAAAAAAATGTTATTATTACTGTTTTTATAATATGTTTACGATTATACGTTTTGTTTGTATTACTTCCAAAGTTCAAATTATCGGAAGGCTACAGGACGATCTTACACAAAACGTAACGAAGAAACGATAATTACATTATTTCATTCTCCTACCTTTTATCATCGAGACTATATTATTATTTTTTAATTATAAAATCATAATTATGGTCCATGTAAAAGAACCTTAAAGCTCATGGTGGAGTTTAGATGGAAAAGAAAGAGACTTACAAACTTAGGATGGGGTTGTTTAGCATGATAACATACAAAAACAACACAATGATTGAATTATTTAATTCTTTCAATAACAAAGAGCCCACAACATGGTAAAAACAGTCTTCATGATCTCATAATCACAATTTATAGATCCAAGCAATAACTGAATATGACTTCTTCCATTTTTCTCCATTATTGTACTTATATTTCCTCTACTTTAGCTCATTTTCATAGTCCTGATCTATAAGGGTGAATGAAGATGAGGCTTTATTTATTGTCTTTGATATAATCATTATGTTTTGTAATCCTTGACTATGCATTTTTATGAATGTCTTATTTAAATTCAGGCTTATGCCTCAAATTGTCTCAATGTTTATTCATGGCCTTATTATTAATTTTACCTTTACTAGTGTTATGAAGCTCATTTGCACTTCTATTTGCATTTTTATGTAGTTCTATCTTCTTCTGGTCTGATCCATGTGTTAAGTTAAATACATAATAATCTAGAACGTATTTTTGGTTGGTGGGGTATGTTAAAATTAGCTTACCTCAAATTGTTATAGAAATATCTATTTTGGCACTTCAGAGTCTTGGTTGGGCTGTGGTGGGGTGTGTGTTTTTGTTGAAGATGGATGTTGAGTAGGATGAGCAGGTCAATTTGAATACATATTACAGCTGACACATTAAATGAAGTATTGATTTATTAAGTTTCATGCAAGTAATAGTATCAATGTATCATAATGTGTAAATTTTATCTTACCTTTCTGCAGGACTCCCTTTTTATAATTCTTTGAAATCTATTTCTTCTTATCAAACCGATGGCTACTCCTTTAGATATGTCACTTGAGGATGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGGTCAGTTCGTAGAGGTCCTCTCAGCATAAATGCGCGCCCATCTGCTTACTCAATTAGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGAGAACCTGATATTCATTGAAAATACATGCTCATGGGGATCTCAAATAACACTATAGTAACTCTAACAGAAGAGGATCAGTACAATTGTTGTTCCATGGAGAACCTCATTGTGGCTCACCCTCTTATCCGAATCGTCTTCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATACGTGTGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGAGTGGAGAATTATATTCTTGTCGATTTATAAGCTGATATGTGTTTTCCCCGTCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCACGCAGAATGAAGAATGTTCAATGGCAGCATGATTTATTTGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGTACAACTCAAGCCATATATATTTGACTAAAGATGCTTTCTCTTCATTTTTGATTAATATTCTCTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCAAGTGTGAGTTCCTACTTGTCTTGTAAAAATGTGCAGTAATGTGTTGCTGTTTGGCTTTCTCTGGAATCAAGTATTAATATTGTTTTAGTAGCCAGAACTGTGTGACTATTTAATCAATATTTTCTTTTGGTGGATTTGGCTTTACTTCAGAAGATGGAGAGTGCTGGAAAAAACTATTACAACGAACTTGTTACTAGAATACATGTAATTTACGCCTGGAACTTTTAGTTAATAAATTATGTTTGTATATATATATATATAGCATGTTTTTATATATCAAATATATAATTTCTCTTCAATGATCAAATTTAAAATTTCTCTTCAATGATCAAATTTAAAATTTCTCTTCAATGATCTATTATTTTATTTCACGAAGAAAATTGGACTTCAAAGTACTTGATTGTTTATTAGTAATATTTGGTGCGAAAAACTCAGTCCATGAATTAAAGTATGGATGAAAGCAATCTTATTTTAAGTAAAAAATATGTTGTATTTTTAATTAACTTGTACTGGTTAGGGTCAGCGCAATTAATTTTTAAAAGAAGTTTGAACCTAGTTAGTTTCAATTCATTTCAATCTAGATATCTCAAAAATCTTGTTAATCCAATCCAACCCATTAAGGTTTTTAGGGTTGAGCTTTTTCCCCTTCCTTAAGGACTTCAACCTATCTGCAAACAAGTGCAATGTAAGAGATTGTGGTTTCATATGTGGTGGTGCCATGGCCTCATTCTTTAGTGCGTATTGTTCCTTGACCGTGTGTTCTAATTCTTGCTCTTCTTGCTTGTCTTTGCTTATCATTGTTATTCATATTTTGTTTCTTTTAAGTTAGCATGCGATTTATAAGCACACATGATAATTATTGTACTCCTGTTTTAAATGCGTTCTTAATGGTTAGCCCAATCAAGCTTTAGTTGGCTGATAAACTTTCCATTGTTTATTAAAGGGCTCGGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGTTATAACAATGTGTTACTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATACCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTCTAGTTACTTTTCTCTCTTCCTTTTTGTCCTTTTTCTTATTTAATTTTAACATCTTTATAACTAATTATTGTGCCCCTGGGGGATAGAAAGCTACTGTACATTGTTCTATTTCTTGATCATTTTTATCCGGCTACTTTTAAGTTGCTTCTTATTCTCTAAAGGGAAATTGTCATTGCCTAATTCCCAATGGTTAAATGGCCGGGATTTCAGGCCAATTAGTCATATCAGTAGTGTTTGTAAAAATTTTTCAAGGGTGCTTCTAGATTGGCTGAAGAAGGTTCTCCCTTTAACAATTCTCCAAATTTGCTTTCATCGATAAACTTGCCAGATTAACAGACTCCGTTTTTATAGCCAATGAAATAGCTGATGCTGATAAGGAGCAAAACTCAAGGATAAATCTTGAAGGTTCGACATGGAAGAGACCTGTGAGCTTAGTTAGTTAGGACTTCAATTCAAAGACTTTGAGAAGAAAGGTTCTGAGCCAAATGAGCTAAGTGGATGCTTGATTGTTTCACCTATACCTGATTTTCTATCTTTATCAATGCGAGGCCTATAGGATGGTTTAAAGTTTCAAAATTCTTCAATAAGGCGACTCTCTATCTGTGTAGTATTAGAATAAATTCCAAGATGTAGTGATGGGATTCCATAAATCAGCAATAAGAGCCTCCTTTTTCAGTGAGAGATGATATAGCGCAGGGTAATTTGTTTGGAGATTAGATGCTCCTATCCGAACATCCTTCCAAAACAGTGTTTTATTTCCTTTTCCAACAATAGAGTTTGTATGACTGTAAACAAGCTGCTGTAATTTATCTATAAATTTCCATGGGCCTTTTACCTGGTTTCTGATTATAGTGAGTTGCTCCATATTTAGAAGCAATAATTTTCCTCCAAAGAGCATCTTTTTCTTTGTAGATTCGCCAAACCCATTTTTCCTGGAGGGACACGTTTTTCTTATGCAAATTATAAATACCCAATCCTCTCCTTCCTCAATCGGAGCAACTTTTCAATAGCCTTTGTAACCTTATTAGGAGCCGCTAACGCGAGCATAGTTTAACTGGTAAAAACTTGTATTAATAACCAACCAAGAGGTTTGTGGTTCAAATCCCCCTACTCATTTTTTTTTTTGAGAGAACACCAACTTTCATTGAGAAAAAAATGAAAGAATACAAGGGCATTAAAAAAAAAGCCCACAAAAGGGAACCCCACCAAAGAAAGAGGCTCCAATCAAGGTAAAATAAGACCTATTGAATAGTTACAAAATGCCTTCGAAACCGAAGCCCAAGCCCAGAGAGAAACATTATATCTAATGAGGGCTGAAACCTCAGATGGGGGCATCTCTACACCTCTAAAAGTCCTATTATTCCTCTCTCCCCATAAACCCCATAAAACAACACACACCCCGACAAGCCAAAGCTCCCTCCCTTTGTCTCTAAAAGGCAGATGGTGGAGGAACTCCTCGATCATCTCTCTTAGAACTCTGAAACTCCTGCCCTGCACCCAAAAGCCTCAAAGAACAAACTCCAGATTGTGTGAGCAAAGACACAACTCCACAATAAAGGATCCAAATCTTCCTCCGCCTTTCGACATAGAATGCAATAGAACGGACCCACCAACAAAGGCATCTTTCTTGTGAGATTATTGAAGGTATTAACTCTTCCATGAATAACTTGCCAGGTAAAGAATCTAACATTCTTAGGAATTTTCACCCCCAGAGAATAAAGAAGGAACTACATGAGAAGCCCTTAGAAGGGCTAAGACTCCACCTACGAATATCCCTCCCCCTCCCTAAACTGAAGCTCTCCAATCAAGGCAAGAGAGCTACAACCTCCACTACTTCCCTATCGACCAAAGAACATTGGAAACCCAAAGAATAAGAAAGAGAGCCCCCGAGAACCATGATAATCTAAAAATCATCTTGTTTTTCATGGTGGACGTGGACAATCGATAGAGATTAGAAAACTTGGAGCAGAGGGAACTATCTCCCACCCACTTGTCCTCCCAAAAATAAATATCCCTCCCATCTCCCACAATACAATGAACTGGACTCGAAAAAATCGGGGGCTTCCATGGATTCCTGGCCATGCCTGTGAGCCCATCCATCAACCACTGATAGGGATGATAGCCGTACTTACTAACAATTATTTGATGCCATAAGGAAGTTGATGTTAGGCCTCCAATTATCTTGCAATATGCTCGAAGGGGTAAAAAGGGAAATGCAGACCCAACATTCCCTGCAGAATCGGTTTAGAAGTTGGTGCGCAATGGGAGGGGACCAGCTATGCCTTTATTTCCGTTATGCTTTTGTCATATAAATAGTCTCTTTTGTAATAGTCGTTTTTAGGTTTTACTTTGGTAAATAGCTGAAAGCTATAGGAGAAAGGAGAGATTATCGGCCCTCTCGAATTGGCCGGGAGCTTTTGTAATCGTTTAGCTCTCTCTGATTATCAATACAACTTGTGAGGATACCTCACAACTTGGTATCAGAGCACGTTCACCCTGGGAAGACTAGGCAAAATGGCACAGAAAAGGATCGAGGAAAGACTGGATGTAACGGACACTGAGCTGGAAGGAATCAAGAAGGAAATGCAGAAGTTACCTGCGATCGAGAGGAACTTAGCGAAGCTTTCGCAAACTTCTGAGGAAACGGTCAAGGCTCTGGCGGCGATTGCGAGCGAGATGGTTCACTGGCGAACCAAATCTCCTTCCTCCGGCGTCACAGAGGCATCGGGTTCGAAAGGGAAGGAAAAAGAGAGTGACACACAAAATGAGTTGAGCAACCTGAATGAGGACGCACCTCCTTCAGCTACGAGTGGAAGTGTGAAGAAAGAACCTATCGGAGGAACCGGTAGCGAACGCCTTAAGTTTAGAAAGGTGGAGATGCCAGTGTTTGGAGGCGATGACCTGGATTCGTGGCTCTTCAGAGCAGACAGGTACTTTCAATTATATCAGGTTACTGACCATGAAAAACTTGTTGTTGCAGTAGTGAGTTTAGAGGGCGAGGCTCTCAACTGGTACAAGATAATTGGAGGCCTAACATCACCATCGAGGCTCTCAACTGGAACAAGTCGTTAGCAATGACTCCGGCAGGTTTACTTCAGCCGTTAGAGGTACCTACCAGGATTTGGGAACATATCACGATGGATTTCATAGAGGGACTACCACGCTCTGAAGGCTGTGATGCGATATTAGTAGTGGTGGACCGCTTAAGTAAGTATGGTCATTTCTTAGCTTTGAAACACCCGTTCACCGCCAAAACTGTAGCAGCCAAGTTCATTCAAGAAATTGTGCGCCTACACGGGTATCCGGGCTCGATAATCTCAGACAGGGACAAAATTTTCATCAGTCACTTTTGGACTGAACTCTTTCGGATGCAAGGAACTAAGTTGAAGCGTAGCACCTCTTATCATCCGCAAACGGATGGACAGACCGAAGCGGTAAACAAATGTGTAGAGCATTTCCTAAGGTGCTTTTGTGGGGAGAGACCTAGGAAGTGGTTCCAGTGGATAGGTTGGGCTGAATACTGGTACAACACCACATTCCATATATCCATTGGAATCACTCCCTTCCAGGCGGTTTATGGAAGACCACCACCGCCCCTCATCTCCTACGGCGAACAGGTAACAACCAATTCCACCTTGGAACAGCAGTTGGTGGAAAGAGATGTGGCCCTGGGAGTTATAAGGGAAAATATGCGCCTTGCACAAGAAAGAATGAAGAAATTTGCTGATAAACACAGAAGAGAAGTGGAATTCGAGGCAGGCGACATGGTATTTCTTAAACTTCGGCCTTATAGACAAACATCCTTGGCCAACCGCCGGAACGAGAAGCTGTCTCCTAAATACTTCGGGCCCTACGAGATAGAAGAACGAATTGGGAAGGTTGCCTACCGTCTGAAACTGCCACCAACGTCCAGTGTGCACCCAGTGTTCCATGTATCTCAGCTCAAGAAGATGTTGGGGAACAATAATGTTGTGCAACCAATTCCACCTCCAATAACTGAGAATTTTGAGTGGCAGGCAGAACCAGACGACATTTATGCTTGTAGAAAGAACCAGGACAGTGGGGAAACAGAGTTGTTAGTTAGCTGGAAGCATCTACCGGAACATGAAGCGACTTGGGTGCTTTTATCAGCTTTTCGAGAAAAATTTCCCACTTACCACCTTGAGGACAAGGTGTCTTTGACCCCCGATGGTGATGTTAGGCCTCCAATTATCTTGCAATATGCTCGAAGGGGTAAAAAGGGAAATGCAGACCCAACATTCCCTGCAGAATCGGTTTAGAAGTTGGTGTGCAATGGGAGGGGACCAGCTATGCCTTTATTTCCGTTATGCTTTTGTCATATAAATAGTCTCTTTTGTAATAGTCGTTTTTAGGTTTTACTTTGGTAAATAGCTGAAAGCTATAGGAGAAAGGAGAGATTACCGGCCCTCTCGAATTGGCCGGGAGCTTTTGTAATCGTTTAGCTCTTTCTCTGATTATCAATACAACTTGTGAGGATACCTCACAGTTGACTCAAGTGGGAACCGCCATAGCCATTTAACTAGCAGATCTCTATTTCTCAAATTCAGATTCCCTAATTCTAGACCACCAAGACCCAACAAGTTTGCTCACCGTCTCCCATCTAAGTGCCCCCCCCCCCCCCCACATGTTGTAACCTTATTAGGAGCAAGAAATAATGAGAAATAAATTGGAAAATTAGCGAGGGTAGCTTGTATACGAGTGTCTTCCACCTTTAGATATGTGTGACGCCCCCAATTATATAAATGTTGCTCCACTTTTTCAATAATCGGAATCCAAAAGTTTGAAGATTGAGGATTGCTCTTTAGAGGGAGACCCAAAATGTAGTTGACCAAGATCCAAGCTTACATCCAAAGGAGGATGCGAGAATCGAAGCTTGTTGTGTGCTGATTCCAATGACCAAAAATTCAGTTTTGAGGCAATTAATATTTAATCCCGATGCTTCCTCAAAAGAGTGGATAGTTTTGAAGAGATTATCAAGCAAGGTTTCATTGGGGTAGGAAAACAGTATAGTATCATTGATAAACTGAAGGTGCGTAAAGGATAAGGATGGTGAGGCCACTCCAACCTAGAAACCTTCGATGAGGCATGGTTGTTCTGTTAGTATAAATGTCCTACTTAAGCAATCAACCACAAAGATGAATAGGAAAGGAGGGAGGGGATCGCCTTAACGAAGACCTTTAGAAGCATGAAGTTTCCTCGTAGGTTTACCATTAATGATGGTGAAATAATCTGGAGAAGAGATGCAACCTCTAATCCATTTTCTCCATATTTGCCTGAACCCCTTTGTTAGAAGAATCTCGTCAAGAAAATCTCAATCGACCATATCAAAAGCCTTTTCAATGTCAAGTTTGATGACAACCTCTTTCTTTTTCTTATGATTCCCTTCATCAATTATCTCATTGACAATGAGTGATGCATCAAGGATTTGGCAATTGACAGTAAGTTCTTTAAACACATTACTTACATTGTTCTCCCTTGGTGTAAATCTTACCTGCTGTTTAGTTCCTATAGTCTCACTCCTCTTATTGCTCAATGGAAGCGTTTTTTTTTTTAAATAAAAAAATTTAATTTCTTTGACATTATTTGCCTTCTTTTTTAATCATCTTATCAAGAAAGGAATCGGAATTGATGTTTCTCATAGAAAAAAAGACAGACGAAAAGAAAGTAAAGAAGTTTGGGAATATGAACTCTTTGGATACTCACAGATATATAACAAAAGAGACGCTTTTCATTGATAGATGAAAAGAAAGAAAGAAGTTTAGGAATACAAACCCCCGATGGGAGTGAAAGAACAAACAACTGAACCAATAAAGTACAAATCTCCCAAAATTACAACTGCCAAAATAAAACATCGAAGAACAAAGTATACCTAAGGGAGAAGAAAACATGCAAAATAATCCCAGAAGTAAAGCCTTCGATTTGAAAAGCCACAGAAGCCAAAACACAATCCATCCAAATGCAAAACCAGCATCAAAACTGACCACCCAAAGCTCTGGAAAAGAGATCCATGAAGACTTTGGTGAGAGAGATTGTTTCAAATTCCTTCGAAGCTACTGAACAGCACGGTGAATCATTTAAAACAAACCCCTATTCCGATAAGGGACCTGTTGCATGCTTGAAAAATTTGGAAGTCCTTTGGATCTTCGAACATGTGCTCAGCACCGAAGAAAGATGAAAAAGCCTTATTTCGCTTGGATCTTTGGGAAGGCCTCTAGAAGAATTTCAGCTTCTGAATTGAAGCTGCTCACACTAATTGGATCGTCGCTAAAATCAAAACTCCTCTAATTCACCTCTAAAAACAACTTCATCAGTTTAATTACTAGTACCTTGAGAAAAGGGGTGGATCTCTTTTGAGAACTCCTTTAACAGCCCAATAGATTTTGAAATACCCTTAGATGAACTCAATCAACCAAACCCAGGAGAAGGGTAGCCATCTTTTTTGAATTGTTTTCTTCGGCTGTAGATGAGAGGGAAAGGCTCCATTGAGATCACCTTGGACATAATACTAATTTGACAAGTATTTCCAAGATTTAGTGTTCATCGGAGTAACTTAACCTGTAGTTTGTTATAATATAATCTCTACCTGCTATCTCAGACTGGAAGAGTCTGATAGGTTGGTTATGTTATTTCGATGTTTAACTTAACCTATAGTTTGTTATAAACGCCCTTTTCATCTAAATAGTATTTTCAGTTCCATTCTATGTAAAATCACTAAAAAGAAGTTCCATTTCGAGTAGCTTTCTAAAAATCCACTTCGAATGTAATGTAACTATACTAGACACGCAAATTCTTCCAGAACTGGTCTAAACTAGCATCGGCAGATTGCAGTCAAGTTACTTCTTAAAATGTGACTATCTTCTCAAGATTCGTTTTTGTGCAAACTGTCCCCCTTTCTTTTACGTGCTCTCCTTTAAAAATCGTGTTTCTTGAAATGATTGATGAATACAAAATAAAATTTCCTACAGATGTTGAGTAATATTAATATTTGTTGGGTATATGCAGGTCTGAATCTGGTCGTACCGGTAACTCCAACGCGGTCAACCCTTTTCCTGGGTAAGTTCAATAGTGGAGTAACTGGGTTTTATTATTTCTATAATTATTATATTTTGGCATTGTTTTACTGCATTCTAGTTGGATTGGTTTTGGAAGTCATTTGTTCCTAGTATTGTTATCTCTGGTTTTCTTAGGGATGTTGCAATTAAGAGTTGAAATTTTTTTAACCTGTTTGGAGGTCAGGCTAATGAATCGTTTTCCCTCTATAGTTCTTTTATAAAAATATCTTTTATGTAAAAAATTATTTGGTAAGATAATATTTAAACATTTCTTAGAATAAAAAAGAAAAAGCGGAAAACAGATGATGGTAGTGCATGTCCAATGTTTTCGTGTGTTTTAAAAGTTTTCTAAATTAACTGTTTATATAATGCCTTCTAATACGGAGAAGAAAGTCATGAAAACACGAACGAAAATATATATATATATATTTGTAGTTTTTATAATTTCAAATAATAAGAAACAGTTTTAAAATATTAGTTTTGATGGGATTTTGTGCACTAGTGGCAGTATGGCCGCACCCAGCAATTTTAAAATATTAGTTATTTCAATTCAAAAGGGAGGGAAGGAGTTCTAAAAGAAGAATAGTTTCTAAATTCATATGAGCATTAAGGTGTATACTCTTAACCATGAGGTCAAAGATTTAAATCTCCACCCCACGTTTGCAAAATATTTTTCAAATAAATGTTTTTCTAGGTGTGGTCATGAATGCGATTTGCTTCATAGTTTCTTTGTTTTTTTTTGACATGTGGAGTGGAGGAATTCGAATCATTGATCTCTTGGTCATCAGTACAAGCTTTATGCCGGTTGAGCTTTGCTCATGTTGGCAGCGATTTGCTTCATAGTTATGAGATGGGGTTGTAGGTTTAAATCTTTGTCCATATTTATGATGTCATATATATTTTCAAAAAAAGGAAGTGATATTGTCTGCATGGTGTTCATTTGATAAGAGTCTAAAAATGCACGTCAGGAGTTGGAAATAGAGCAAGATGAGTTAACTTTGGTTAAATTGGTAAAAGTAAAACAAGTTTTTGTAGCAGTATGGTCTTATTGAAGTTTTTGGAATCTGTACAGTCCAAGCCATCGTGGAGGGCTGAGGAATGGCCGTGGCCGTGGGCGAGGAGGCTGGAGTCGTGGTCTAGGAGGTCTAGGTGGAGGAGGCCGGGGCCGAGGGCGTGGTCGTGGTCGTGGCCGTGGTCAGGGCCAGGGAAGAAAGAAACCCGTGGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTATCATGCAGAAGCCATGCAAACCTGAGGAACCTTGGAATATGCAAAAACAGAAGTACAATTATATGTTAGCTGTAAGATTATATGTTACATTCTCGGGCTGATTATTTTGTTATCATTAGTAGTTTCCATGTTTCCCTTTTCCTCTTCAGTAGACTAGATTGTATTTCCTGTTAATGGAAAATGATGCTGTTTGATGACCCTCTGTTATCGAAACTTCTACCTTTCCGGTCGATCCTGAACGAACCAAGTGTGAGGCTCAATGTCTACAAGCCTCACAAACTCATGCCCGGTGATCCAGTGCTTTCTCAAATAGGTAAATTGCTTTTTGTATAAAGGGTTTCATGTCTAGTTGGTTATACAATGTTGAAAATGGGGAGTACCTTGTATTTATGGGACCTATTCTTCAACACGCTGTTGTTCTAGTACTCGATATCTTCCATTGGCCCCCGAGAATCTCTAAGTCGTACTGTCAATTTCTCTTGCTCTTCTTTCCTCGATCTTGACTCTGATCGTTTTCTTATCTCCACCCTAAAAATGTCTTCAACTTGTGTTTGATCAATCTAAATTAAAAGGTGATTGAATGGGTAAAGGTAAGATTTTGGCCGATTGAAATT

mRNA sequence

GAAAGAAGAAAAAAAGGTTCGATGAAAAAAATATCGTCGTCTTAGTCCCGAAGGAAAAGTCTCTCTCAGGCCCCCGCCGCCGCAGCCGCAGCCGCCGCCTCTCGCCTGAAGAATCTCTGTTTCTCTCGTACAAGCCCTAAAAATCCCACACGCACGTACCGCTTTCCGTCATCATCCCTTCGGAAATCCTCTCCTTGATCTTGTTGAAATCTTTATCTTCTCTCTCTCTTTCTCCCTCGGAAGTTCGACCGACCGTTTCTAGGGATCATCTTCAGGACTCCCTTTTTATAATTCTTTGAAATCTATTTCTTCTTATCAAACCGATGGCTACTCCTTTAGATATGTCACTTGAGGATGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGGTCAGTTCGTAGAGGTCCTCTCAGCATAAATGCGCGCCCATCTGCTTACTCAATTAGCAAGCCCCCACGCAGAATGAAGAATGTTCAATGGCAGCATGATTTATTTGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCAAGTGGCTCGGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGTTATAACAATGTGTTACTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATACCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTCTGAATCTGGTCGTACCGGTAACTCCAACGCGGTCAACCCTTTTCCTGGTCCAAGCCATCGTGGAGGGCTGAGGAATGGCCGTGGCCGTGGGCGAGGAGGCTGGAGTCGTGGTCTAGGAGGTCTAGGTGGAGGAGGCCGGGGCCGAGGGCGTGGTCGTGGTCGTGGCCGTGGTCAGGGCCAGGGAAGAAAGAAACCCGTGGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTATCATGCAGAAGCCATGCAAACCTGAGGAACCTTGGAATATGCAAAAACAGAAGTACAATTATATGTTAGCTGTAAGATTATATGTTACATTCTCGGGCTGATTATTTTGTTATCATTAGTAGTTTCCATGTTTCCCTTTTCCTCTTCAGTAGACTAGATTGTATTTCCTGTTAATGGAAAATGATGCTGTTTGATGACCCTCTGTTATCGAAACTTCTACCTTTCCGGTCGATCCTGAACGAACCAAGTGTGAGGCTCAATGTCTACAAGCCTCACAAACTCATGCCCGGTGATCCAGTGCTTTCTCAAATAGGTAAATTGCTTTTTGTATAAAGGGTTTCATGTCTAGTTGGTTATACAATGTTGAAAATGGGGAGTACCTTGTATTTATGGGACCTATTCTTCAACACGCTGTTGTTCTAGTACTCGATATCTTCCATTGGCCCCCGAGAATCTCTAAGTCGTACTGTCAATTTCTCTTGCTCTTCTTTCCTCGATCTTGACTCTGATCGTTTTCTTATCTCCACCCTAAAAATGTCTTCAACTTGTGTTTGATCAATCTAAATTAAAAGGTGATTGAATGGGTAAAGGTAAGATTTTGGCCGATTGAAATT

Coding sequence (CDS)

ATGGCTACTCCTTTAGATATGTCACTTGAGGATGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGGTCAGTTCGTAGAGGTCCTCTCAGCATAAATGCGCGCCCATCTGCTTACTCAATTAGCAAGCCCCCACGCAGAATGAAGAATGTTCAATGGCAGCATGATTTATTTGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCAAGTGGCTCGGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGTTATAACAATGTGTTACTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATACCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTCTGAATCTGGTCGTACCGGTAACTCCAACGCGGTCAACCCTTTTCCTGGTCCAAGCCATCGTGGAGGGCTGAGGAATGGCCGTGGCCGTGGGCGAGGAGGCTGGAGTCGTGGTCTAGGAGGTCTAGGTGGAGGAGGCCGGGGCCGAGGGCGTGGTCGTGGTCGTGGCCGTGGTCAGGGCCAGGGAAGAAAGAAACCCGTGGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTATCATGCAGAAGCCATGCAAACCTGA

Protein sequence

MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPSAYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPVSARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGRGRGRGGWSRGLGGLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

Homology

[Close]

BLAST of Lcy02g001740 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.3e-73
Identity = 167/297 (56.23%), Postives = 217/297 (73.06%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLSINARP 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL++NARP
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSE 120
           S+++I+KP RR++++ WQ  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 IPVSAR--INVTGVNGRSRRTVVLTSESGR----TGNSNAVNPFPGPSHRGGLRNGRGRG 240
            P+S R  +NVTG+NGR +RTVV+    G      G      P P  S R  + N +G  
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQG-- 240

Query: 241 RGGWSRGLGGLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
            GG   G GG    GRG G GRGRG G+G G KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 241 -GGMRGGRGGFRARGRGNG-GRGRGGGRGNG-KKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of Lcy02g001740 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.4e-68
Identity = 169/312 (54.17%), Postives = 220/312 (70.51%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLSINARP-SAYSISKPPRRMKNVQW--QHDLFEDSLRASGISGIEIGTKLYVSNLDYGV 120
           PL++N RP S++SI+K  RR +++ W  Q+DL+E++LRA G+SG+E+GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-IPVSARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNG 240
           +E+LG N E  PV+AR+NVTG+NGR +R+V                 F G   RGG R G
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSV-----------------FIGQGVRGG-RVG 240

Query: 241 RGRGRGGWSRGL-------GGL---GGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDEL 287
           RGRG G   R L       GG+    GG RGRGRG G GRG    G+G KKPVEKS+ +L
Sbjct: 241 RGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADL 292

[Close]

BLAST of Lcy02g001740 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.6e-43
Identity = 139/305 (45.57%), Postives = 179/305 (58.69%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           M+  LDMSL+D+I K+NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSISKPPRRMKNVQWQHDLF--EDSLRAS----------GISGIEIGTKLYVSNLDYGV 120
            YS     ++  +  WQ+D+F  + S+ A+          G S IE GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDI+ELFSE+GDLKR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 IEMLGDNAEIPVSARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGR 240
           IE++G N   P    +    +             +G  GN N    F G  +     N R
Sbjct: 181 IEIVGTNLSAPALPILATAQIP---------FPTNGILGNFN--ENFNGNFNGNFNGNFR 240

Query: 241 GRGRGGW---SRGLGGLGGGGRGRGRG-RGR-GRGQGQGRKKPVEKSSDELDKELENYHA 289
           GRGRGG+    RG GG GGG    GRG RGR GRG G GR +    S+++LD EL+ YH 
Sbjct: 241 GRGRGGFMGRPRG-GGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHK 291

[Close]

BLAST of Lcy02g001740 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-42
Identity = 128/293 (43.69%), Postives = 168/293 (57.34%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           M+T LDMSL+D+I KN     ++RG A   RG G     G      + R  P   + R +
Sbjct: 1   MSTGLDMSLDDMIAKNR----KSRGGAGPARGTGSGSGPG-----PTRRNNPNRKSTRSA 60

Query: 61  AYSISKPPRRMKNVQWQHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIREL 120
            Y  +K P       W HD+F    ED       +GIE GTKLY+SNLDYGV  EDI+EL
Sbjct: 61  PYQSAKAPES----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKEL 120

Query: 121 FSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 180
           F+E+G+LKR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N 
Sbjct: 121 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL 180

Query: 181 EIPVSARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGRGRGRGGWS 240
           +                       + SGR  N N+     G   RG      G+GRGG  
Sbjct: 181 Q--------------------TAAAPSGRPANGNS----NGAPWRG------GQGRGGQQ 240

Query: 241 RGLGGLGGGGRGRGRGRGRGRGQGQGRKKPVEK-SSDELDKELENYHAEAMQT 289
           RG GG GGGGRG   G GRGR  G+G   P EK S+++LD +L+ YH+  M+T
Sbjct: 241 RG-GGRGGGGRG---GGGRGRRPGKG---PAEKISAEDLDADLDKYHSGDMET 243

[Close]

BLAST of Lcy02g001740 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-34
Identity = 119/297 (40.07%), Postives = 163/297 (54.88%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNG---GRGVVIGS------VRRG 60
           MA  +DMSL+D+IK N  ++  +RG  R GRG GG+  G   GRG V G       VR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRG-GRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNR 60

Query: 61  PLSINA----RPSAYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYG 120
           P+        RP+ YS    P+++   +WQHDLF+    A   +G+E G KL VSNLD+G
Sbjct: 61  PVMARGGGRNRPAPYS---RPKQLPE-KWQHDLFDSGFGAG--AGVETGGKLLVSNLDFG 120

Query: 121 VTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPM 180
           V+  DI+ELF+E G LK+ A+HYD++GR  G+A+V + R++DA  A+K+YN V LDG+PM
Sbjct: 121 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 180

Query: 181 KIEMLGDNAEIPVSARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNG 240
            I++              VT      RR             + +VN       RGG+   
Sbjct: 181 NIQL--------------VTSQIDTQRRP------------AQSVN-------RGGMTRN 240

Query: 241 RGRGRGGWSRGLGGLGGGGRGRG-RGRGRGRGQGQGRKKPVEKSSDELDKELENYHA 284
           RG         LGG GGGG  RG RG  RGRG+G GR    + S++ELD +L+ Y+A
Sbjct: 241 RG--------VLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEELDAQLDAYNA 249

[Close]

BLAST of Lcy02g001740 vs. ExPASy TrEMBL
Match: A0A6J1FAB9 (THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.8e-141
Identity = 275/295 (93.22%), Postives = 282/295 (95.59%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPL INARPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           A+SISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRN--GRGRGRGGWSRG 240
           SARINVTGVNGRSRRTVVLTSESGRTG+S+AVNPFPGPSHRGGLR+  GRGRGRGGWSRG
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSHAVNPFPGPSHRGGLRSGRGRGRGRGGWSRG 240

Query: 241 LG-----GLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
           LG     GLGGGGRGRGRG G GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 241 LGGGGGRGLGGGGRGRGRGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of Lcy02g001740 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.5e-140
Identity = 276/305 (90.49%), Postives = 282/305 (92.46%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPL INARPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           A+SISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGRGRGRGGWSRGLG 240
           SARINVTGVNGRSRRTVVLTSESGRTG+SNAVNPFPGPSHRGGLR+GRGRGRGGWSRGLG
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGGWSRGLG 240

Query: 241 GLGG-----------GGRGRGRGR------GRGRGQGQGRKKPVEKSSDELDKELENYHA 289
           G GG           GGRGRGRGR      G GRG+GQGRKKPVEKSS ELDKELENYHA
Sbjct: 241 GGGGRGLGGGGGRGLGGRGRGRGRGSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHA 300

[Close]

BLAST of Lcy02g001740 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 6.3e-136
Identity = 264/288 (91.67%), Postives = 269/288 (93.40%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPL INAR S
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           AYSI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE+PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGRGRGRGGWSRGLG 240
           SARINVTG NGR+RRTVVLT ESGR    N VNPFPGPSHRGGLRN RGRGRG W+RG+ 
Sbjct: 181 SARINVTGTNGRNRRTVVLTPESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGV- 240

Query: 241 GLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
           GLGG G GRGRGRGRGR  GQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 GLGGSGGGRGRGRGRGR--GQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of Lcy02g001740 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.2e-132
Identity = 260/288 (90.28%), Postives = 271/288 (94.10%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           MATPLDMSLED+IKKNNREKLRARGRARRGRGAGGSFNGGR VVIGS+RRGPLSIN RPS
Sbjct: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           A+SISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE+LGDNAE+PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEILGDNAEMPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGRGRGRGGWSRGLG 240
           SARINVTG+NGRSRRTVVLTSESGRT +S  VN FPGPS+RG LR GRGRGRGGWSRG G
Sbjct: 181 SARINVTGLNGRSRRTVVLTSESGRTDSSTVVNHFPGPSNRGALR-GRGRGRGGWSRGQG 240

Query: 241 GLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
            +GG     GRGRGRGRG+G GRKK VEKSSDELDK+LENYHAEAMQT
Sbjct: 241 QVGG-----GRGRGRGRGRGLGRKKTVEKSSDELDKDLENYHAEAMQT 281

[Close]

BLAST of Lcy02g001740 vs. ExPASy TrEMBL
Match: A0A0A0L717 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.3e-100
Identity = 189/200 (94.50%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPL INAR S
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           AYSI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE+PV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGVNGRSRRTVVLT 201
           SARINVTG NGR+RRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of Lcy02g001740 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 512.7 bits (1319), Expect = 2.1e-141
Identity = 276/295 (93.56%), Postives = 282/295 (95.59%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPL INARPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           A+SISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRN--GRGRGRGGWSRG 240
           SARINVTGVNGRSRRTVVLTSESGRTG+SNAVNPFPGPSHRGGLR+  GRGRGRGGWSRG
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRG 240

Query: 241 LG-----GLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
           LG     GLGGGGRGRGRG G GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 241 LGGGGGRGLGGGGRGRGRGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of Lcy02g001740 vs. NCBI nr
Match: XP_022935328.1 (THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex subunit 4D-like [Cucurbita moschata] >XP_022935330.1 THO complex subunit 4D-like [Cucurbita moschata])

HSP 1 Score: 510.8 bits (1314), Expect = 7.9e-141
Identity = 275/295 (93.22%), Postives = 282/295 (95.59%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPL INARPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           A+SISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRN--GRGRGRGGWSRG 240
           SARINVTGVNGRSRRTVVLTSESGRTG+S+AVNPFPGPSHRGGLR+  GRGRGRGGWSRG
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSHAVNPFPGPSHRGGLRSGRGRGRGRGGWSRG 240

Query: 241 LG-----GLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
           LG     GLGGGGRGRGRG G GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 241 LGGGGGRGLGGGGRGRGRGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of Lcy02g001740 vs. NCBI nr
Match: XP_022982649.1 (THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subunit 4D-like [Cucurbita maxima] >XP_022982651.1 THO complex subunit 4D-like [Cucurbita maxima])

HSP 1 Score: 508.1 bits (1307), Expect = 5.1e-140
Identity = 276/305 (90.49%), Postives = 282/305 (92.46%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPL INARPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           A+SISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGRGRGRGGWSRGLG 240
           SARINVTGVNGRSRRTVVLTSESGRTG+SNAVNPFPGPSHRGGLR+GRGRGRGGWSRGLG
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGGWSRGLG 240

Query: 241 GLGG-----------GGRGRGRGR------GRGRGQGQGRKKPVEKSSDELDKELENYHA 289
           G GG           GGRGRGRGR      G GRG+GQGRKKPVEKSS ELDKELENYHA
Sbjct: 241 GGGGRGLGGGGGRGLGGRGRGRGRGSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHA 300

[Close]

BLAST of Lcy02g001740 vs. NCBI nr
Match: XP_038896761.1 (THO complex subunit 4D-like [Benincasa hispida])

HSP 1 Score: 505.0 bits (1299), Expect = 4.3e-139
Identity = 268/288 (93.06%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           MATPLDMSLEDVIKK+NREKLRARGRARRGRGAGGSFNGGRGVV+GSVRRGPL INAR S
Sbjct: 1   MATPLDMSLEDVIKKSNREKLRARGRARRGRGAGGSFNGGRGVVVGSVRRGPLGINARAS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           AYSI KPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGV+KEDIRELFSEI
Sbjct: 61  AYSIRKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVSKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDG+PMKIEMLGDNAE+PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGRPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGRGRGRGGWSRGLG 240
           SARINVTGVNGRSRRTVVLT ESGRT +SN VNPFPGPSHRGGLRNGRGRGRGGW+RG G
Sbjct: 181 SARINVTGVNGRSRRTVVLTPESGRTASSNVVNPFPGPSHRGGLRNGRGRGRGGWNRGQG 240

Query: 241 GLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
             GGGG   GRGRGRGRG+GQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 VGGGGG---GRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of Lcy02g001740 vs. NCBI nr
Match: KAG6581189.1 (THO complex subunit 4C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 501.1 bits (1289), Expect = 6.2e-138
Identity = 275/311 (88.42%), Postives = 282/311 (90.68%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGG+ VVIGSVRRGPL INARPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGKAVVIGSVRRGPLGINARPS 60

Query: 61  AYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           A+SISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEIPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRN--GRGRGRGGWSRG 240
           SARINVTGVNGRSRRTVVLTSESGRTG+SNAVNPFPGPSHRGGLR+  GRGRGRGGWSRG
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRG 240

Query: 241 LG-------------GLGGGGRGRGR--------GRGRGRGQGQGRKKPVEKSSDELDKE 289
           LG             GLGGGGRGRGR        G G GRG+GQGRKKPVEKSS ELDKE
Sbjct: 241 LGGGGGRGLGGGGGRGLGGGGRGRGRGSGSGSGSGSGSGRGRGQGRKKPVEKSSAELDKE 300

[Close]

BLAST of Lcy02g001740 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 )

HSP 1 Score: 280.4 bits (716), Expect = 1.6e-75
Identity = 168/293 (57.34%), Postives = 218/293 (74.40%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLSINARP 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL++NARP
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSE 120
           S+++I+KP RR++++ WQ  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 IPVSAR--INVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGRGRGRGGW 240
            P+S R  +NVTG+NGR +RTVV+    GR G      P P  S R  + N +G   GG 
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQVRGGRGGR----GPAPTVSRRLPIHNQQG---GGM 240

Query: 241 SRGLGGLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
             G GG    GRG G GRGRG G+G G KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 241 RGGRGGFRARGRGNG-GRGRGGGRGNG-KKPVEKSAADLDKDLESYHADAMNT 279

[Close]

BLAST of Lcy02g001740 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 )

HSP 1 Score: 276.2 bits (705), Expect = 3.0e-74
Identity = 167/297 (56.23%), Postives = 217/297 (73.06%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLSINARP 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL++NARP
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSE 120
           S+++I+KP RR++++ WQ  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 IPVSAR--INVTGVNGRSRRTVVLTSESGR----TGNSNAVNPFPGPSHRGGLRNGRGRG 240
            P+S R  +NVTG+NGR +RTVV+    G      G      P P  S R  + N +G  
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQG-- 240

Query: 241 RGGWSRGLGGLGGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 289
            GG   G GG    GRG G GRGRG G+G G KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 241 -GGMRGGRGGFRARGRGNG-GRGRGGGRGNG-KKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of Lcy02g001740 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 259.2 bits (661), Expect = 3.9e-69
Identity = 169/312 (54.17%), Postives = 220/312 (70.51%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLSINARP-SAYSISKPPRRMKNVQW--QHDLFEDSLRASGISGIEIGTKLYVSNLDYGV 120
           PL++N RP S++SI+K  RR +++ W  Q+DL+E++LRA G+SG+E+GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-IPVSARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNG 240
           +E+LG N E  PV+AR+NVTG+NGR +R+V                 F G   RGG R G
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSV-----------------FIGQGVRGG-RVG 240

Query: 241 RGRGRGGWSRGL-------GGL---GGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDEL 287
           RGRG G   R L       GG+    GG RGRGRG G GRG    G+G KKPVEKS+ +L
Sbjct: 241 RGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADL 292

[Close]

BLAST of Lcy02g001740 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 259.2 bits (661), Expect = 3.9e-69
Identity = 169/312 (54.17%), Postives = 220/312 (70.51%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLSINARP-SAYSISKPPRRMKNVQW--QHDLFEDSLRASGISGIEIGTKLYVSNLDYGV 120
           PL++N RP S++SI+K  RR +++ W  Q+DL+E++LRA G+SG+E+GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-IPVSARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNG 240
           +E+LG N E  PV+AR+NVTG+NGR +R+V                 F G   RGG R G
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSV-----------------FIGQGVRGG-RVG 240

Query: 241 RGRGRGGWSRGL-------GGL---GGGGRGRGRGRGRGRGQ---GQGRKKPVEKSSDEL 287
           RGRG G   R L       GG+    GG RGRGRG G GRG    G+G KKPVEKS+ +L
Sbjct: 241 RGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADL 292

[Close]

BLAST of Lcy02g001740 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-44
Identity = 139/305 (45.57%), Postives = 179/305 (58.69%), Query Frame = 0


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLSINARPS 60
           M+  LDMSL+D+I K+NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSISKPPRRMKNVQWQHDLF--EDSLRAS----------GISGIEIGTKLYVSNLDYGV 120
            YS     ++  +  WQ+D+F  + S+ A+          G S IE GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDI+ELFSE+GDLKR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 IEMLGDNAEIPVSARINVTGVNGRSRRTVVLTSESGRTGNSNAVNPFPGPSHRGGLRNGR 240
           IE++G N   P    +    +             +G  GN N    F G  +     N R
Sbjct: 181 IEIVGTNLSAPALPILATAQIP---------FPTNGILGNFN--ENFNGNFNGNFNGNFR 240

Query: 241 GRGRGGW---SRGLGGLGGGGRGRGRG-RGR-GRGQGQGRKKPVEKSSDELDKELENYHA 289
           GRGRGG+    RG GG GGG    GRG RGR GRG G GR +    S+++LD EL+ YH 
Sbjct: 241 GRGRGGFMGRPRG-GGFGGGNFRGGRGARGRGGRGSG-GRGRDENVSAEDLDAELDKYHK 291

The following BLAST results are available for this feature:

BLAST of Lcy02g001740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ72	4.3e-73	56.23	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	5.4e-68	54.17	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q8L719	1.6e-43	45.57	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q8L773	1.3e-42	43.69	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
B5FXN8	3.9e-34	40.07	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]

BLAST of Lcy02g001740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAB9	3.8e-141	93.22	THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 S...	[more]
A0A6J1J564	2.5e-140	90.49	THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=...	[more]
A0A1S3C452	6.3e-136	91.67	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]
A0A6J1CP51	4.2e-132	90.28	THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 ...	[more]
A0A0A0L717	3.3e-100	94.50	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV...	[more]

BLAST of Lcy02g001740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527122.1	2.1e-141	93.56	THO complex subunit 4D [Cucurbita pepo subsp. pepo]	[more]
XP_022935328.1	7.9e-141	93.22	THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex sub...	[more]
XP_022982649.1	5.1e-140	90.49	THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subun...	[more]
XP_038896761.1	4.3e-139	93.06	THO complex subunit 4D-like [Benincasa hispida]	[more]
KAG6581189.1	6.2e-138	88.42	THO complex subunit 4C, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy02g001740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37720.2	1.6e-75	57.34	ALWAYS EARLY 4	[more]
AT5G37720.1	3.0e-74	56.23	ALWAYS EARLY 4	[more]
AT1G66260.1	3.9e-69	54.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	3.9e-69	54.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	1.1e-44	45.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..170 e-value: 8.3E-19 score: 78.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..167 e-value: 8.9E-15 score: 54.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 97..174 score: 15.203922
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 216..288 e-value: 1.4E-11 score: 54.4
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 228..283 e-value: 3.0E-7 score: 31.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 94..173 e-value: 1.3E-21 score: 78.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..282
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..288
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4C	coord: 1..288
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 97..171 e-value: 5.13666E-42 score: 137.386
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 30..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g001740.1	Lcy02g001740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding