Lcy02g001640 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g001640
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr02: 2189171 .. 2190630 (-)
RNA-Seq Expression	Lcy02g001640
Synteny	Lcy02g001640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGTGGCGCTGATGATACCGGCCGCCATGGCGATCATGATTCTTCTGTTCAATCCAGCCGGAGGTGATGCTTTTACATCTTTCAACAATGATCCTTCTGGTAAGTTTGGAATAGCTTTTGAAAAAGTTTATTTGATTTTTTGAGTTCAACAACATTTTTAGAGGGAGGTAGTCGAAAGCATATGTCAATTATCTTTGAGCTATGCTCACTTAAAAAAAAAAAAAACGAACGAAAGTTTACTTTAAATCAAAATACTTCTATAAATATTCAATATTGGAGATGATTTCTTCCAAACGTTACGCCCTGATTGATAATCATTTGGTTTTTGGTTTTTGGTTTTTGGTTTTTGAAAATTAAGCTTGTTTTCCTCCAATTTTCTTACCATGATTTTCATCTTTGTTAAGGGTACATTTGAATTCCTAGCAAAATTCCAAAAATAAAAACAAGCTTTTAAAAACTACTTTTTTTAGTTTTCAAAACGTGTCTTGGGTTTTGAAAACATGGGAATAAGGTATATAACAAAACCAAGAAACTTAATGGTTGTAGTGTTTTTAAGCTTAATTTTCAAAAACCAAAAACCAAAAACCAAATGGTTATCAAACGGGACTTTCTATACGTTTTATAAGTTTTTGTTCATTTGGGTTCTTATACTTTTTTGTTTTAATTCAAGAAATTGTGGGGTGAGAATCAATCCATCTATTTTTGAAATGGTAATAAGTGTCTTATCCAATGAGTTAGGTTGGAATTGACTTGGTTATTATATTTTTAAAATGTTTATTTTGACTTTTTTTTTTTTTTTGAAGAGATTTATTTTGACCTTTTGTATCTTTAGCTTTTGTCTATTTTAATTTTTGTATTATCATAATGTCAATTTTAATCTCTATAAAGTCATGTCTAATTGATCTTTGAACTTGGTACAAAATTAAAAAAAAAAAAAAAAAATCTTCAAACTTCAAAAATTATTTAATAGATTCGTAAACTTTCGGTTTGTGTCTAATAAGCCTCTGAAATTTAAAAGTGTGTCTAGTAAGTTCTTAAAAAGTATCGAATAGGTCAAAGTCGACCTATTAGAGACAAAGTTAAGAATCGAAGGACCTACCGAACACACAATTTTAAATTGAATACAAACTTGAAAGTTCATGAAGTAAATTCGTAGTTGAACCAAAATTGTAACCCAAATTCTTGTTTCTTCATGTCTGACTGGTGTGACCCAGCTGCCGGAAAAAACGTCGTCGGAGACCAGGATATGGAGTTAGAGTTTTTGATGGAGTCACATATCAGTAGAATCTTGGCTGAAACCCAAAGCTTTGAAACCAACGCCACCAGCAATGCCAACGAACCTTCGATCGGAGACTGCCAACGGCCGCCGCGCTACGACAGTTGCGTCGGCGAGAAAAGAAATAATCCGCCGTCGGAAAACTGTGACACCTACAATCGGGAAAATCCCTGTTAG

mRNA sequence

ATGGCTGCAGTGGCGCTGATGATACCGGCCGCCATGGCGATCATGATTCTTCTGTTCAATCCAGCCGGAGGTGATGCTTTTACATCTTTCAACAATGATCCTTCTGCTGCCGGAAAAAACGTCGTCGGAGACCAGGATATGGAGTTAGAGTTTTTGATGGAGTCACATATCAGTAGAATCTTGGCTGAAACCCAAAGCTTTGAAACCAACGCCACCAGCAATGCCAACGAACCTTCGATCGGAGACTGCCAACGGCCGCCGCGCTACGACAGTTGCGTCGGCGAGAAAAGAAATAATCCGCCGTCGGAAAACTGTGACACCTACAATCGGGAAAATCCCTGTTAG

Coding sequence (CDS)

ATGGCTGCAGTGGCGCTGATGATACCGGCCGCCATGGCGATCATGATTCTTCTGTTCAATCCAGCCGGAGGTGATGCTTTTACATCTTTCAACAATGATCCTTCTGCTGCCGGAAAAAACGTCGTCGGAGACCAGGATATGGAGTTAGAGTTTTTGATGGAGTCACATATCAGTAGAATCTTGGCTGAAACCCAAAGCTTTGAAACCAACGCCACCAGCAATGCCAACGAACCTTCGATCGGAGACTGCCAACGGCCGCCGCGCTACGACAGTTGCGTCGGCGAGAAAAGAAATAATCCGCCGTCGGAAAACTGTGACACCTACAATCGGGAAAATCCCTGTTAG

Protein sequence

MAAVALMIPAAMAIMILLFNPAGGDAFTSFNNDPSAAGKNVVGDQDMELEFLMESHISRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC

Homology

[Close]

BLAST of Lcy02g001640 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.2e-35
Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFNPAGGDAFTSF---NNDPSAAGKNVVGDQDMELEFLMESHI 60
           MAA A+MIPAAMAIMILL NP   DA T+F   NND SAAGK ++GDQD++ EFLMESHI
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           SRILA +Q F+T+ T++AN+ S G C+RPPRYDSC+G+K NNPP ENC T+NR NPC
Sbjct: 61  SRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001640 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFNPAGGDAFTSF---NNDPSAAGKNVVGDQDMELEFLMESHI 60
           MAA A++IPAAMAIMILL NP   DA TSF   NND SAAGK ++GDQD++ EFLMESHI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           SRILA +Q+F+T+ T++AN+ S G C RPPRYDSC+G+K NNPP ENC T+NR NPC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001640 vs. ExPASy TrEMBL
Match: A0A0A0LCJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.9e-28
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFN-PAGGDAFTSF----NNDPSAAGKNVVGDQDMELEFLMES 60
           M A ALMIPAA+  MILL + P+  DA T+F    +N  S  GK ++G++DMELEFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           HISRILA +++++T +T+NAN+ S G C RPPRYDSC+G+KRNNPP  NC  YNR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of Lcy02g001640 vs. ExPASy TrEMBL
Match: A0A6J1CP71 (uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013278 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.3e-27
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFNPAGGDAFTS----FNNDPSAAGKNVVGDQDMELEFLMESH 60
           MA  A+MIP  MA+ ILL NP   DA T+     NN+     K ++GD+D+  EFLME H
Sbjct: 1   MATAAVMIPTVMALAILLPNPIDCDALTTSKRLLNNETWGNHKRLIGDEDIGSEFLMELH 60

Query: 61  ISRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           +SRILAE+  F+T  T NAN  S+ DC+RPPRYDSC+GEKRN PP+ENC T+NR NPC
Sbjct: 61  LSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRNTPPAENCGTFNRANPC 118

[Close]

BLAST of Lcy02g001640 vs. ExPASy TrEMBL
Match: A0A5D3BS53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002320 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFN-PAGGDAFTSF----NNDPSAAGKNVVGDQDMELEFLMES 60
           M A A MIPAA+  MILL N P+  +A T+F    +N  S   + +VG++DM++EF+MES
Sbjct: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60

Query: 61  HISRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           HISRILA +Q+F+T +T +AN+ S G C RPPRYDSC+G+KRNNPP  NC TYNR NPC
Sbjct: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

[Close]

BLAST of Lcy02g001640 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 157.5 bits (397), Expect = 6.7e-35
Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFNPAGGDAFTSF---NNDPSAAGKNVVGDQDMELEFLMESHI 60
           MAA A+MIPAAMAIMILL NP   DA T+F   NND SAAGK ++GDQD++ EFLMESHI
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           SRILA +Q F+T+ T++AN+ S G C+RPPRYDSC+G+K NNPP ENC T+NR NPC
Sbjct: 61  SRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001640 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-34
Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFNPAGGDAFTSF---NNDPSAAGKNVVGDQDMELEFLMESHI 60
           MAA A++IPAAMAIMILL NP   DA TSF   NND SAAGK ++GDQD++ EFLMESHI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           SRILA +Q+F+T+ T++AN+ S G C RPPRYDSC+G+K NNPP ENC T+NR NPC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001640 vs. NCBI nr
Match: KAG6607029.1 (hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036725.1 hypothetical protein SDJN02_00345, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-34
Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFNPAGGDAFTSF---NNDPSAAGKNVVGDQDMELEFLMESHI 60
           MAA A++IPAAMAIMILL NP   DA TSF   NND SAAGK ++GDQD++ EFLMESHI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           SRILA +Q+F+T+ T++AN+ S G C RPPRYDSC+G+K NNPP ENC T+NR NPC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001640 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 5.7e-34
Identity = 79/117 (67.52%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFNPAGGDAFTSF---NNDPSAAGKNVVGDQDMELEFLMESHI 60
           MA  A MIPAAMAIMILL NP   DA TSF   NND SAAGK ++GDQD++ EFLMESHI
Sbjct: 1   MATAAAMIPAAMAIMILLLNPINSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           SRILA +Q+F+T+ T++AN+ S G C RPPRYDSC+G+K NNPP ENC T+NR NPC
Sbjct: 61  SRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001640 vs. NCBI nr
Match: KGN57781.1 (hypothetical protein Csa_009565 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 6.1e-28
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 1   MAAVALMIPAAMAIMILLFN-PAGGDAFTSF----NNDPSAAGKNVVGDQDMELEFLMES 60
           M A ALMIPAA+  MILL + P+  DA T+F    +N  S  GK ++G++DMELEFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILAETQSFETNATSNANEPSIGDCQRPPRYDSCVGEKRNNPPSENCDTYNRENPC 115
           HISRILA +++++T +T+NAN+ S G C RPPRYDSC+G+KRNNPP  NC  YNR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

The following BLAST results are available for this feature:

BLAST of Lcy02g001640 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g001640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBP5	3.2e-35	67.52	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]
A0A6J1G927	1.2e-34	67.52	uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A0A0LCJ4	2.9e-28	59.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]
A0A6J1CP71	7.3e-27	56.78	uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5D3BS53	1.6e-26	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy02g001640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998105.1	6.7e-35	67.52	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
XP_022948338.1	2.5e-34	67.52	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
KAG6607029.1	3.3e-34	67.52	hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023523220.1	5.7e-34	67.52	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]
KGN57781.1	6.1e-28	59.66	hypothetical protein Csa_009565 [Cucumis sativus]	[more]

BLAST of Lcy02g001640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g001640.1	Lcy02g001640.1	mRNA