Lcy02g001620 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g001620
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr02: 2178719 .. 2180282 (-)
RNA-Seq Expression	Lcy02g001620
Synteny	Lcy02g001620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAAACACGAAGCCGCCCCTATTCTTCCTCCTTCCCAAATCCCAATCGCCTTCCTCGATCCGCCGCCCGTCGCCACCACCAGAACCAGCGGCGGCAATGGCTGCAGCAGCGCTGATGATACCGGCCGCCATGGTGATCATGATTCTGCTGCTCGATCCCACCGGTTGTGCTGCTGTTGCATCTCTTAAACCACTCCCCAACAACGATACTTCAGGTGAGTTTGGAATAACTTTTGAAACTTCTTCTACCGTTGATAGTTTCTCTTCCTATACTAGGTTTCGGTATTTTAAGTTTCCTTCATTTTAGTATTTGTATTTTTATTTAGTTCTTGTATTTTCAACTTTTATTAATTGATTTTAATTTTTATGAAGTTCAGTGATAAGTTATTGAATTTTAAAAAGTGTTTAATTTGATCTACAAACTTTCATTCCTGTGTCTAATAAATCTTTGAAATTTAAAAGTGTCTAATAAGTCTTTGAATTTTCAACTTTGTATTTAATAAGTCCTTAATATATAGATTCAAAATTAAAATATATTTATACTGATTTATTTGATACTCTACCAAATTGAATTATGGGTATGTTAGACATAAAAACAAATCCCTAAGGCCTCATTAACAATTTGATTTTTTGTTTTTAGTTTTTGTAAATTAAGCGTCTATAGACACTACTACCACTCATAACTTTATTTGTTTTTGTCAACTTCCATCTAACATGTTTTACAAAAATCAAGTCAAATTTTAAAAACCAAAAGGAGTAGTTTTCAATAGTTGTTTTTGTTTTTAGAATTTGGCTAAGAATTCAAGTGTGTGCTTAACAAGAATGAAAACCATGATAAGGAAATTGGGGAAAAAGAATCGATTGACAATTCCTAAAATCACGATAACCATCCCTCAAATACTAAACTACTTTAGCCATAAAACAAAGGGGATTTTTTTTTCTAGCCATTTACCATAATTCTTCAACATAATATTAGACACAAAATTCAAAGTTCAGAAACCTATTAATAAATGCTTTTTAAAATTCATGATCTAAAGACACAAACTCCAACATTTAAACTTTAATATAACCCAAATTTTAACACAAATTCTATACACAATGAAAACTCTTTTTTCTCTGTGTCAACTGGTGTGACCCAGGTGTCGGGAAATACCTCGTCGGAGACCAAGATATCGAGTCGGAGTTTCTAATGGAGTCGCACATCAGTCGGATCTTAGCCGGTTCCCAAAACTTCGAAACCAGCAACACCAACAACGCCAACAGAGCTTCCAGCGGCGATTGCGGTCGGCCGCCGCGCTACGACAGTTGCCTCGGCCAGAAAAGAAATAATCCGCCGTCGGGAAACTGTGGCACCTTCAATCGTGCAAATCCCTGTTAGAAAAAAAAAAACAACCATGTTCTTACATTGGTGACTGAAGATTCGACCACATATGAATCTAGATTTACAACTTCTTCAATGAATAATGTCATTAGCTTTATTGGATGTTTGATCGTTTAAAGTTTTCGATTTCATCGTATTTGTATTGAGTTTATATATATAAAGTTTGGGGTGTGTTTGGTTTAA

mRNA sequence

ACCAAACACGAAGCCGCCCCTATTCTTCCTCCTTCCCAAATCCCAATCGCCTTCCTCGATCCGCCGCCCGTCGCCACCACCAGAACCAGCGGCGGCAATGGCTGCAGCAGCGCTGATGATACCGGCCGCCATGGTGATCATGATTCTGCTGCTCGATCCCACCGGTTGTGCTGCTGTTGCATCTCTTAAACCACTCCCCAACAACGATACTTCAGGTGTCGGGAAATACCTCGTCGGAGACCAAGATATCGAGTCGGAGTTTCTAATGGAGTCGCACATCAGTCGGATCTTAGCCGGTTCCCAAAACTTCGAAACCAGCAACACCAACAACGCCAACAGAGCTTCCAGCGGCGATTGCGGTCGGCCGCCGCGCTACGACAGTTGCCTCGGCCAGAAAAGAAATAATCCGCCGTCGGGAAACTGTGGCACCTTCAATCGTGCAAATCCCTGTTAGAAAAAAAAAAACAACCATGTTCTTACATTGGTGACTGAAGATTCGACCACATATGAATCTAGATTTACAACTTCTTCAATGAATAATGTCATTAGCTTTATTGGATGTTTGATCGTTTAAAGTTTTCGATTTCATCGTATTTGTATTGAGTTTATATATATAAAGTTTGGGGTGTGTTTGGTTTAA

Coding sequence (CDS)

ATGGCTGCAGCAGCGCTGATGATACCGGCCGCCATGGTGATCATGATTCTGCTGCTCGATCCCACCGGTTGTGCTGCTGTTGCATCTCTTAAACCACTCCCCAACAACGATACTTCAGGTGTCGGGAAATACCTCGTCGGAGACCAAGATATCGAGTCGGAGTTTCTAATGGAGTCGCACATCAGTCGGATCTTAGCCGGTTCCCAAAACTTCGAAACCAGCAACACCAACAACGCCAACAGAGCTTCCAGCGGCGATTGCGGTCGGCCGCCGCGCTACGACAGTTGCCTCGGCCAGAAAAGAAATAATCCGCCGTCGGGAAACTGTGGCACCTTCAATCGTGCAAATCCCTGTTAG

Protein sequence

MAAAALMIPAAMVIMILLLDPTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMESHISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC

Homology

[Close]

BLAST of Lcy02g001620 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.3e-42
Identity = 92/118 (77.97%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLDPTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMESH 60
           MAAAA++IPAAM IMILLL+PT   A+ S KPL NNDTS  GKYL+GDQD++SEFLMESH
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPL-NNDTSAAGKYLIGDQDLDSEFLMESH 60

Query: 61  ISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           ISRILAGSQNF+TS TN+AN+AS G CGRPPRYDSCLGQK NNPP  NCGTFNR NPC
Sbjct: 61  ISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001620 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.0e-41
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLDPTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMESH 60
           MAAAA+MIPAAM IMILLL+PT   A+ + KPL NNDTS  GKYL+GDQDI+SEFLMESH
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPL-NNDTSAAGKYLIGDQDIDSEFLMESH 60

Query: 61  ISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           ISRILAGSQ+F+TS TN+AN+AS G C RPPRYDSCLGQK NNPP  NCGTFNR NPC
Sbjct: 61  ISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001620 vs. ExPASy TrEMBL
Match: A0A5D3BS53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002320 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.4e-33
Identity = 77/119 (64.71%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLD-PTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMES 60
           M A+A MIPAA+V MILLL+ P+ C A+ + +PL +N TS   + +VG++D++ EF+MES
Sbjct: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60

Query: 61  HISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           HISRILA SQNF+T++T +AN+AS G CGRPPRYDSCLGQKRNNPP  NCGT+NRANPC
Sbjct: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

[Close]

BLAST of Lcy02g001620 vs. ExPASy TrEMBL
Match: A0A0A0LCJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.5e-32
Identity = 75/119 (63.03%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLD-PTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMES 60
           M A+ALMIPAA+V MILLL  P+ C A+ + +PL +N +S  GK ++G++D+E EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           HISRILA S+N++T++T NAN+AS G C RPPRYDSCLG+KRNNPP  NC  +NRANPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of Lcy02g001620 vs. ExPASy TrEMBL
Match: A0A0A0L711 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 73/117 (62.39%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 3   AAALMIPAAMVIMILLLDPTGC-AAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMESHI 62
           A ALMIPAAM +M+++L PT C  A+ S KPL N+ + G+ KY+V ++DI+S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           SR+LA SQ+FETS+TNNA + S+G+C RPPRYDSCLG KRN PP  NC TFNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Lcy02g001620 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 1.0e-41
Identity = 93/118 (78.81%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLDPTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMESH 60
           MA AA MIPAAM IMILLL+P    A+ S KPL NNDTS  GKYL+GDQDI+SEFLMESH
Sbjct: 1   MATAAAMIPAAMAIMILLLNPINSDALTSFKPL-NNDTSAAGKYLIGDQDIDSEFLMESH 60

Query: 61  ISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           ISRILAGSQNF+TSNTN+AN+AS G CGRPPRYDSCLGQK NNPP  NCGTFNR NPC
Sbjct: 61  ISRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001620 vs. NCBI nr
Match: KAG6607029.1 (hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036725.1 hypothetical protein SDJN02_00345, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 1.0e-41
Identity = 93/118 (78.81%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLDPTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMESH 60
           MAAAA++IPAAM IMILLL+PT   A+ S KPL NNDTS  GKYL+GDQDI+SEFLMESH
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPL-NNDTSAAGKYLIGDQDIDSEFLMESH 60

Query: 61  ISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           ISRILAGSQNF+TS TN+AN+AS G CGRPPRYDSCLGQK NNPP  NCGTFNR NPC
Sbjct: 61  ISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001620 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 92/118 (77.97%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLDPTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMESH 60
           MAAAA++IPAAM IMILLL+PT   A+ S KPL NNDTS  GKYL+GDQD++SEFLMESH
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPL-NNDTSAAGKYLIGDQDLDSEFLMESH 60

Query: 61  ISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           ISRILAGSQNF+TS TN+AN+AS G CGRPPRYDSCLGQK NNPP  NCGTFNR NPC
Sbjct: 61  ISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001620 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLDPTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMESH 60
           MAAAA+MIPAAM IMILLL+PT   A+ + KPL NNDTS  GKYL+GDQDI+SEFLMESH
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPL-NNDTSAAGKYLIGDQDIDSEFLMESH 60

Query: 61  ISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           ISRILAGSQ+F+TS TN+AN+AS G C RPPRYDSCLGQK NNPP  NCGTFNR NPC
Sbjct: 61  ISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Lcy02g001620 vs. NCBI nr
Match: TYK01622.1 (hypothetical protein E5676_scaffold451G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 77/119 (64.71%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MAAAALMIPAAMVIMILLLD-PTGCAAVASLKPLPNNDTSGVGKYLVGDQDIESEFLMES 60
           M A+A MIPAA+V MILLL+ P+ C A+ + +PL +N TS   + +VG++D++ EF+MES
Sbjct: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60

Query: 61  HISRILAGSQNFETSNTNNANRASSGDCGRPPRYDSCLGQKRNNPPSGNCGTFNRANPC 119
           HISRILA SQNF+T++T +AN+AS G CGRPPRYDSCLGQKRNNPP  NCGT+NRANPC
Sbjct: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

The following BLAST results are available for this feature:

BLAST of Lcy02g001620 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g001620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G927	8.3e-42	77.97	uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1KBP5	7.0e-41	77.12	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]
A0A5D3BS53	2.4e-33	64.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LCJ4	4.5e-32	63.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711	1.3e-31	62.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]

BLAST of Lcy02g001620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523220.1	1.0e-41	78.81	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]
KAG6607029.1	1.0e-41	78.81	hypothetical protein SDJN03_00371, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948338.1	1.7e-41	77.97	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
XP_022998105.1	1.4e-40	77.12	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
TYK01622.1	5.0e-33	64.71	hypothetical protein E5676_scaffold451G002320 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy02g001620 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g001620.1	Lcy02g001620.1	mRNA