Lcy02g000790 (gene) Sponge gourd (P93075) v1

Overview
NameLcy02g000790
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionWD repeat-containing protein 91-like protein
LocationChr02: 1160728 .. 1161249 (+)
RNA-Seq ExpressionLcy02g000790
SyntenyLcy02g000790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTAGAGATGAGTTGCAGAGGAATTTTGATGAGTTGAATGTGGCTATTGGGAACCAAGAATCCAGAGTGCGTCACCATGAAACTCGAGCCCAGAAAACAGCTGTGTTCTTCCTCGTCTGGCAGCGAGTCTTCTTCTTTGCTATCAGTTCCACATATTCGTCCCTCAAGTGTACTGGTTGGGGGATGGTGTTGGCTTGGAACATGTTGTCTTCCTCTCTGTTCTTTCTGCTTTTCCTAAGGGATGCCGTTATGTGTTTTTGGGCTCTGTATGTGCTCGACGTGATCTACAAGGAACAAATCCAAATTGCCCTGGAGGCCACGAACCGAGATCGTGAGGCTTTAAGTGATGGGTTCAGCTCCAATTTCAATCTCCCGGTGATGACACTCAACTATGATTCACTCCGAGTTGTGCTCAGGAAAGTTTTCATGGGCCTCATTTTCTTTGCTTTGCTTCTATTTATTGCTATTGATGTATACGCCTGTAAGTACTTGTTTTGCAGCTCAACTGAACATTGA

mRNA sequence

ATGGCGTCTAGAGATGAGTTGCAGAGGAATTTTGATGAGTTGAATGTGGCTATTGGGAACCAAGAATCCAGAGTGCGTCACCATGAAACTCGAGCCCAGAAAACAGCTGTGTTCTTCCTCGTCTGGCAGCGAGTCTTCTTCTTTGCTATCAGTTCCACATATTCGTCCCTCAAGTGTACTGGTTGGGGGATGGTGTTGGCTTGGAACATGTTGTCTTCCTCTCTGTTCTTTCTGCTTTTCCTAAGGGATGCCGTTATGTGTTTTTGGGCTCTGTATGTGCTCGACGTGATCTACAAGGAACAAATCCAAATTGCCCTGGAGGCCACGAACCGAGATCGTGAGGCTTTAAGTGATGGGTTCAGCTCCAATTTCAATCTCCCGGTGATGACACTCAACTATGATTCACTCCGAGTTGTGCTCAGGAAAGTTTTCATGGGCCTCATTTTCTTTGCTTTGCTTCTATTTATTGCTATTGATGTATACGCCTGTAAGTACTTGTTTTGCAGCTCAACTGAACATTGA

Coding sequence (CDS)

ATGGCGTCTAGAGATGAGTTGCAGAGGAATTTTGATGAGTTGAATGTGGCTATTGGGAACCAAGAATCCAGAGTGCGTCACCATGAAACTCGAGCCCAGAAAACAGCTGTGTTCTTCCTCGTCTGGCAGCGAGTCTTCTTCTTTGCTATCAGTTCCACATATTCGTCCCTCAAGTGTACTGGTTGGGGGATGGTGTTGGCTTGGAACATGTTGTCTTCCTCTCTGTTCTTTCTGCTTTTCCTAAGGGATGCCGTTATGTGTTTTTGGGCTCTGTATGTGCTCGACGTGATCTACAAGGAACAAATCCAAATTGCCCTGGAGGCCACGAACCGAGATCGTGAGGCTTTAAGTGATGGGTTCAGCTCCAATTTCAATCTCCCGGTGATGACACTCAACTATGATTCACTCCGAGTTGTGCTCAGGAAAGTTTTCATGGGCCTCATTTTCTTTGCTTTGCTTCTATTTATTGCTATTGATGTATACGCCTGTAAGTACTTGTTTTGCAGCTCAACTGAACATTGA

Protein sequence

MASRDELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATNRDREALSDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSSTEH
Homology
BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match: A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-20
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 0

Query: 6   ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSS-LKCTGWGM 65
           EL+RNF+ L   +  QESRV++HE+RAQ   + +L+W R+FFFAIS T SS LKC  W M
Sbjct: 5   ELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCIDWWM 64

Query: 66  VLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIA---------LEATNRDREA 125
           VL  ++  + ++FL FL    M +   + +D+I KEQ +I          L+  +   EA
Sbjct: 65  VLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDLAMEA 124

Query: 126 --LSDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFC 169
              SDGF  +F+  V  L Y + R+V RK ++     ALL   AI++YAC +L+C
Sbjct: 125 GDSSDGFQFSFH--VKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYC 177

BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match: E5GBE1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 0

Query: 6   ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVF---FFAISSTYSSLKCTG- 65
           EL+RNFD L +    QE RVR++ETRAQ  A+  L+W R+F    +  SS+ S L CT  
Sbjct: 7   ELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPH 66

Query: 66  -WGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATN----RDREAL 125
            W MVL +++ S+SL+ L FL    M + A   LD+I K+QI+I+L+  N     D EA 
Sbjct: 67  LW-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEA- 126

Query: 126 SDGFSSN-----FNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSS 171
            D FSS+      +  V  L Y  L VV RK+++      LL   A +VY CK L C+S
Sbjct: 127 GDTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVSAFEVYTCKLLLCNS 183

BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match: A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18
Identity = 69/174 (39.66%), Postives = 97/174 (55.75%), Query Frame = 0

Query: 6   ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMV 65
           EL+R F+EL      QESRVR++ET+ Q     +L++ R+FFF IS T SS  C  W ++
Sbjct: 5   ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64

Query: 66  LAWNMLSSSLFFLLFLRDAVMCFWALYVLDVI---YKEQIQIALEATNRDREAL------ 125
           LA ++L S ++FLLFL    M F   Y LD+I    KE  Q  L + N+D   L      
Sbjct: 65  LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124

Query: 126 -SDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCS 170
            S GF   F+  ++ L  D  R+V RKV++     ALL   AI++Y  KY+ C+
Sbjct: 125 SSGGFEFGFHEKMLML--DHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match: A0A5A7TGW8 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00800 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 73/178 (41.01%), Postives = 99/178 (55.62%), Query Frame = 0

Query: 7   LQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVF---FFAISSTYSSLKCTG-- 66
           L+RNFD L +    QE RVR++ETRAQ  A+  L+W R+F    +  SS+ S L CT   
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67

Query: 67  WGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATN----RDREALS 126
           W MVL +++ S+SL+ L FL    M + A   LD+I K QI+I+L+  N     D EA  
Sbjct: 68  W-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKRQIEISLQILNTGSPNDDEA-G 127

Query: 127 DGFSSN-----FNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSS 171
           D FSS+      +  V  L Y  L VV RK+++      LL   A +VY CK L C+S
Sbjct: 128 DTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVAAFEVYTCKLLLCNS 183

BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match: A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 67/168 (39.88%), Postives = 102/168 (60.71%), Query Frame = 0

Query: 7   LQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMVL 66
           L+R+F+EL +    QE  +R +E+RAQ   + +L+W+R FFFA+S T S LKC  W +VL
Sbjct: 6   LKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSPLKCIDWRVVL 65

Query: 67  AWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIA---LEATNRD-----REA--L 126
             +++ S ++FLLFL    M +     +D+I KEQ  I    L+A N+D      EA  L
Sbjct: 66  GLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQDDGGSAMEAGDL 125

Query: 127 SDGFSSNFNLPV-MTLNYD-SLRVVLRKVFMGLIFFALLLFIAIDVYA 163
           SDG + NF+  +  TLNYD S R+  +KV++  I  +L+   A+++YA
Sbjct: 126 SDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELYA 173

BLAST of Lcy02g000790 vs. NCBI nr
Match: XP_022157130.1 (uncharacterized protein LOC111023927 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-20
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 0

Query: 6   ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSS-LKCTGWGM 65
           EL+RNF+ L   +  QESRV++HE+RAQ   + +L+W R+FFFAIS T SS LKC  W M
Sbjct: 5   ELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCIDWWM 64

Query: 66  VLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIA---------LEATNRDREA 125
           VL  ++  + ++FL FL    M +   + +D+I KEQ +I          L+  +   EA
Sbjct: 65  VLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDLAMEA 124

Query: 126 --LSDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFC 169
              SDGF  +F+  V  L Y + R+V RK ++     ALL   AI++YAC +L+C
Sbjct: 125 GDSSDGFQFSFH--VKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYC 177

BLAST of Lcy02g000790 vs. NCBI nr
Match: ADN33782.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 101.3 bits (251), Expect = 8.7e-18
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 0

Query: 6   ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVF---FFAISSTYSSLKCTG- 65
           EL+RNFD L +    QE RVR++ETRAQ  A+  L+W R+F    +  SS+ S L CT  
Sbjct: 7   ELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPH 66

Query: 66  -WGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATN----RDREAL 125
            W MVL +++ S+SL+ L FL    M + A   LD+I K+QI+I+L+  N     D EA 
Sbjct: 67  LW-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEA- 126

Query: 126 SDGFSSN-----FNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSS 171
            D FSS+      +  V  L Y  L VV RK+++      LL   A +VY CK L C+S
Sbjct: 127 GDTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVSAFEVYTCKLLLCNS 183

BLAST of Lcy02g000790 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 69/174 (39.66%), Postives = 97/174 (55.75%), Query Frame = 0

Query: 6   ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMV 65
           EL+R F+EL      QESRVR++ET+ Q     +L++ R+FFF IS T SS  C  W ++
Sbjct: 5   ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64

Query: 66  LAWNMLSSSLFFLLFLRDAVMCFWALYVLDVI---YKEQIQIALEATNRDREAL------ 125
           LA ++L S ++FLLFL    M F   Y LD+I    KE  Q  L + N+D   L      
Sbjct: 65  LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124

Query: 126 -SDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCS 170
            S GF   F+  ++ L  D  R+V RKV++     ALL   AI++Y  KY+ C+
Sbjct: 125 SSGGFEFGFHEKMLML--DHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

BLAST of Lcy02g000790 vs. NCBI nr
Match: KAA0042580.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05984.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-17
Identity = 73/178 (41.01%), Postives = 99/178 (55.62%), Query Frame = 0

Query: 7   LQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVF---FFAISSTYSSLKCTG-- 66
           L+RNFD L +    QE RVR++ETRAQ  A+  L+W R+F    +  SS+ S L CT   
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67

Query: 67  WGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATN----RDREALS 126
           W MVL +++ S+SL+ L FL    M + A   LD+I K QI+I+L+  N     D EA  
Sbjct: 68  W-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKRQIEISLQILNTGSPNDDEA-G 127

Query: 127 DGFSSN-----FNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSS 171
           D FSS+      +  V  L Y  L VV RK+++      LL   A +VY CK L C+S
Sbjct: 128 DTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVAAFEVYTCKLLLCNS 183

BLAST of Lcy02g000790 vs. NCBI nr
Match: XP_022157172.1 (uncharacterized protein LOC111023951 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-17
Identity = 67/168 (39.88%), Postives = 102/168 (60.71%), Query Frame = 0

Query: 7   LQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMVL 66
           L+R+F+EL +    QE  +R +E+RAQ   + +L+W+R FFFA+S T S LKC  W +VL
Sbjct: 6   LKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSPLKCIDWRVVL 65

Query: 67  AWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIA---LEATNRD-----REA--L 126
             +++ S ++FLLFL    M +     +D+I KEQ  I    L+A N+D      EA  L
Sbjct: 66  GLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQDDGGSAMEAGDL 125

Query: 127 SDGFSSNFNLPV-MTLNYD-SLRVVLRKVFMGLIFFALLLFIAIDVYA 163
           SDG + NF+  +  TLNYD S R+  +KV++  I  +L+   A+++YA
Sbjct: 126 SDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELYA 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DS873.4e-2040.57uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
E5GBE14.2e-1841.34Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A6J1DSQ05.5e-1839.66uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7TGW81.6e-1741.01WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1DTV62.1e-1739.88uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
XP_022157130.17.1e-2040.57uncharacterized protein LOC111023927 [Momordica charantia][more]
ADN33782.18.7e-1841.34hypothetical protein [Cucumis melo subsp. melo][more]
XP_022157182.11.1e-1739.66uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
KAA0042580.13.3e-1741.01WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... [more]
XP_022157172.14.3e-1739.88uncharacterized protein LOC111023951 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 3..169
NoneNo IPR availablePANTHERPTHR33287:SF8SUBFAMILY NOT NAMEDcoord: 3..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy02g000790.1Lcy02g000790.1mRNA