Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTAGAGATGAGTTGCAGAGGAATTTTGATGAGTTGAATGTGGCTATTGGGAACCAAGAATCCAGAGTGCGTCACCATGAAACTCGAGCCCAGAAAACAGCTGTGTTCTTCCTCGTCTGGCAGCGAGTCTTCTTCTTTGCTATCAGTTCCACATATTCGTCCCTCAAGTGTACTGGTTGGGGGATGGTGTTGGCTTGGAACATGTTGTCTTCCTCTCTGTTCTTTCTGCTTTTCCTAAGGGATGCCGTTATGTGTTTTTGGGCTCTGTATGTGCTCGACGTGATCTACAAGGAACAAATCCAAATTGCCCTGGAGGCCACGAACCGAGATCGTGAGGCTTTAAGTGATGGGTTCAGCTCCAATTTCAATCTCCCGGTGATGACACTCAACTATGATTCACTCCGAGTTGTGCTCAGGAAAGTTTTCATGGGCCTCATTTTCTTTGCTTTGCTTCTATTTATTGCTATTGATGTATACGCCTGTAAGTACTTGTTTTGCAGCTCAACTGAACATTGA
mRNA sequence
ATGGCGTCTAGAGATGAGTTGCAGAGGAATTTTGATGAGTTGAATGTGGCTATTGGGAACCAAGAATCCAGAGTGCGTCACCATGAAACTCGAGCCCAGAAAACAGCTGTGTTCTTCCTCGTCTGGCAGCGAGTCTTCTTCTTTGCTATCAGTTCCACATATTCGTCCCTCAAGTGTACTGGTTGGGGGATGGTGTTGGCTTGGAACATGTTGTCTTCCTCTCTGTTCTTTCTGCTTTTCCTAAGGGATGCCGTTATGTGTTTTTGGGCTCTGTATGTGCTCGACGTGATCTACAAGGAACAAATCCAAATTGCCCTGGAGGCCACGAACCGAGATCGTGAGGCTTTAAGTGATGGGTTCAGCTCCAATTTCAATCTCCCGGTGATGACACTCAACTATGATTCACTCCGAGTTGTGCTCAGGAAAGTTTTCATGGGCCTCATTTTCTTTGCTTTGCTTCTATTTATTGCTATTGATGTATACGCCTGTAAGTACTTGTTTTGCAGCTCAACTGAACATTGA
Coding sequence (CDS)
ATGGCGTCTAGAGATGAGTTGCAGAGGAATTTTGATGAGTTGAATGTGGCTATTGGGAACCAAGAATCCAGAGTGCGTCACCATGAAACTCGAGCCCAGAAAACAGCTGTGTTCTTCCTCGTCTGGCAGCGAGTCTTCTTCTTTGCTATCAGTTCCACATATTCGTCCCTCAAGTGTACTGGTTGGGGGATGGTGTTGGCTTGGAACATGTTGTCTTCCTCTCTGTTCTTTCTGCTTTTCCTAAGGGATGCCGTTATGTGTTTTTGGGCTCTGTATGTGCTCGACGTGATCTACAAGGAACAAATCCAAATTGCCCTGGAGGCCACGAACCGAGATCGTGAGGCTTTAAGTGATGGGTTCAGCTCCAATTTCAATCTCCCGGTGATGACACTCAACTATGATTCACTCCGAGTTGTGCTCAGGAAAGTTTTCATGGGCCTCATTTTCTTTGCTTTGCTTCTATTTATTGCTATTGATGTATACGCCTGTAAGTACTTGTTTTGCAGCTCAACTGAACATTGA
Protein sequence
MASRDELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATNRDREALSDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSSTEH
Homology
BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 3.4e-20
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 0
Query: 6 ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSS-LKCTGWGM 65
EL+RNF+ L + QESRV++HE+RAQ + +L+W R+FFFAIS T SS LKC W M
Sbjct: 5 ELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCIDWWM 64
Query: 66 VLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIA---------LEATNRDREA 125
VL ++ + ++FL FL M + + +D+I KEQ +I L+ + EA
Sbjct: 65 VLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDLAMEA 124
Query: 126 --LSDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFC 169
SDGF +F+ V L Y + R+V RK ++ ALL AI++YAC +L+C
Sbjct: 125 GDSSDGFQFSFH--VKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYC 177
BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match:
E5GBE1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 0
Query: 6 ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVF---FFAISSTYSSLKCTG- 65
EL+RNFD L + QE RVR++ETRAQ A+ L+W R+F + SS+ S L CT
Sbjct: 7 ELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPH 66
Query: 66 -WGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATN----RDREAL 125
W MVL +++ S+SL+ L FL M + A LD+I K+QI+I+L+ N D EA
Sbjct: 67 LW-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEA- 126
Query: 126 SDGFSSN-----FNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSS 171
D FSS+ + V L Y L VV RK+++ LL A +VY CK L C+S
Sbjct: 127 GDTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVSAFEVYTCKLLLCNS 183
BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18
Identity = 69/174 (39.66%), Postives = 97/174 (55.75%), Query Frame = 0
Query: 6 ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMV 65
EL+R F+EL QESRVR++ET+ Q +L++ R+FFF IS T SS C W ++
Sbjct: 5 ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64
Query: 66 LAWNMLSSSLFFLLFLRDAVMCFWALYVLDVI---YKEQIQIALEATNRDREAL------ 125
LA ++L S ++FLLFL M F Y LD+I KE Q L + N+D L
Sbjct: 65 LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124
Query: 126 -SDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCS 170
S GF F+ ++ L D R+V RKV++ ALL AI++Y KY+ C+
Sbjct: 125 SSGGFEFGFHEKMLML--DHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176
BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match:
A0A5A7TGW8 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00800 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 73/178 (41.01%), Postives = 99/178 (55.62%), Query Frame = 0
Query: 7 LQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVF---FFAISSTYSSLKCTG-- 66
L+RNFD L + QE RVR++ETRAQ A+ L+W R+F + SS+ S L CT
Sbjct: 8 LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67
Query: 67 WGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATN----RDREALS 126
W MVL +++ S+SL+ L FL M + A LD+I K QI+I+L+ N D EA
Sbjct: 68 W-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKRQIEISLQILNTGSPNDDEA-G 127
Query: 127 DGFSSN-----FNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSS 171
D FSS+ + V L Y L VV RK+++ LL A +VY CK L C+S
Sbjct: 128 DTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVAAFEVYTCKLLLCNS 183
BLAST of Lcy02g000790 vs. ExPASy TrEMBL
Match:
A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 67/168 (39.88%), Postives = 102/168 (60.71%), Query Frame = 0
Query: 7 LQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMVL 66
L+R+F+EL + QE +R +E+RAQ + +L+W+R FFFA+S T S LKC W +VL
Sbjct: 6 LKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSPLKCIDWRVVL 65
Query: 67 AWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIA---LEATNRD-----REA--L 126
+++ S ++FLLFL M + +D+I KEQ I L+A N+D EA L
Sbjct: 66 GLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQDDGGSAMEAGDL 125
Query: 127 SDGFSSNFNLPV-MTLNYD-SLRVVLRKVFMGLIFFALLLFIAIDVYA 163
SDG + NF+ + TLNYD S R+ +KV++ I +L+ A+++YA
Sbjct: 126 SDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELYA 173
BLAST of Lcy02g000790 vs. NCBI nr
Match:
XP_022157130.1 (uncharacterized protein LOC111023927 [Momordica charantia])
HSP 1 Score: 108.2 bits (269), Expect = 7.1e-20
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 0
Query: 6 ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSS-LKCTGWGM 65
EL+RNF+ L + QESRV++HE+RAQ + +L+W R+FFFAIS T SS LKC W M
Sbjct: 5 ELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCIDWWM 64
Query: 66 VLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIA---------LEATNRDREA 125
VL ++ + ++FL FL M + + +D+I KEQ +I L+ + EA
Sbjct: 65 VLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDLAMEA 124
Query: 126 --LSDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFC 169
SDGF +F+ V L Y + R+V RK ++ ALL AI++YAC +L+C
Sbjct: 125 GDSSDGFQFSFH--VKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYC 177
BLAST of Lcy02g000790 vs. NCBI nr
Match:
ADN33782.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 101.3 bits (251), Expect = 8.7e-18
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 0
Query: 6 ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVF---FFAISSTYSSLKCTG- 65
EL+RNFD L + QE RVR++ETRAQ A+ L+W R+F + SS+ S L CT
Sbjct: 7 ELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPH 66
Query: 66 -WGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATN----RDREAL 125
W MVL +++ S+SL+ L FL M + A LD+I K+QI+I+L+ N D EA
Sbjct: 67 LW-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILNTGSPNDDEA- 126
Query: 126 SDGFSSN-----FNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSS 171
D FSS+ + V L Y L VV RK+++ LL A +VY CK L C+S
Sbjct: 127 GDTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVSAFEVYTCKLLLCNS 183
BLAST of Lcy02g000790 vs. NCBI nr
Match:
XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])
HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 69/174 (39.66%), Postives = 97/174 (55.75%), Query Frame = 0
Query: 6 ELQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMV 65
EL+R F+EL QESRVR++ET+ Q +L++ R+FFF IS T SS C W ++
Sbjct: 5 ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64
Query: 66 LAWNMLSSSLFFLLFLRDAVMCFWALYVLDVI---YKEQIQIALEATNRDREAL------ 125
LA ++L S ++FLLFL M F Y LD+I KE Q L + N+D L
Sbjct: 65 LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124
Query: 126 -SDGFSSNFNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCS 170
S GF F+ ++ L D R+V RKV++ ALL AI++Y KY+ C+
Sbjct: 125 SSGGFEFGFHEKMLML--DHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176
BLAST of Lcy02g000790 vs. NCBI nr
Match:
KAA0042580.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05984.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 99.4 bits (246), Expect = 3.3e-17
Identity = 73/178 (41.01%), Postives = 99/178 (55.62%), Query Frame = 0
Query: 7 LQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVF---FFAISSTYSSLKCTG-- 66
L+RNFD L + QE RVR++ETRAQ A+ L+W R+F + SS+ S L CT
Sbjct: 8 LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67
Query: 67 WGMVLAWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIALEATN----RDREALS 126
W MVL +++ S+SL+ L FL M + A LD+I K QI+I+L+ N D EA
Sbjct: 68 W-MVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKRQIEISLQILNTGSPNDDEA-G 127
Query: 127 DGFSSN-----FNLPVMTLNYDSLRVVLRKVFMGLIFFALLLFIAIDVYACKYLFCSS 171
D FSS+ + V L Y L VV RK+++ LL A +VY CK L C+S
Sbjct: 128 DTFSSDNGGLELSFQVQLLQYHPLTVVQRKIYIASTISTLLAVAAFEVYTCKLLLCNS 183
BLAST of Lcy02g000790 vs. NCBI nr
Match:
XP_022157172.1 (uncharacterized protein LOC111023951 [Momordica charantia])
HSP 1 Score: 99.0 bits (245), Expect = 4.3e-17
Identity = 67/168 (39.88%), Postives = 102/168 (60.71%), Query Frame = 0
Query: 7 LQRNFDELNVAIGNQESRVRHHETRAQKTAVFFLVWQRVFFFAISSTYSSLKCTGWGMVL 66
L+R+F+EL + QE +R +E+RAQ + +L+W+R FFFA+S T S LKC W +VL
Sbjct: 6 LKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSPLKCIDWRVVL 65
Query: 67 AWNMLSSSLFFLLFLRDAVMCFWALYVLDVIYKEQIQIA---LEATNRD-----REA--L 126
+++ S ++FLLFL M + +D+I KEQ I L+A N+D EA L
Sbjct: 66 GLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQDDGGSAMEAGDL 125
Query: 127 SDGFSSNFNLPV-MTLNYD-SLRVVLRKVFMGLIFFALLLFIAIDVYA 163
SDG + NF+ + TLNYD S R+ +KV++ I +L+ A+++YA
Sbjct: 126 SDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELYA 173
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DS87 | 3.4e-20 | 40.57 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
E5GBE1 | 4.2e-18 | 41.34 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
A0A6J1DSQ0 | 5.5e-18 | 39.66 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A5A7TGW8 | 1.6e-17 | 41.01 | WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... | [more] |
A0A6J1DTV6 | 2.1e-17 | 39.88 | uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
Match Name | E-value | Identity | Description | |
XP_022157130.1 | 7.1e-20 | 40.57 | uncharacterized protein LOC111023927 [Momordica charantia] | [more] |
ADN33782.1 | 8.7e-18 | 41.34 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
XP_022157182.1 | 1.1e-17 | 39.66 | uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... | [more] |
KAA0042580.1 | 3.3e-17 | 41.01 | WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... | [more] |
XP_022157172.1 | 4.3e-17 | 39.88 | uncharacterized protein LOC111023951 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |