Lcy02g000750 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g000750
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	Chr02: 1126356 .. 1127143 (-)
RNA-Seq Expression	Lcy02g000750
Synteny	Lcy02g000750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCCCTCATTCTTCCGGCTATCTGGCTCAAAGGACCTAAAAGTCAGTGAGTTGTGGAATGGTTGCACTTGGGACCTCAGATTCCGAAGAGGAATTATCGATAGGGAAATGCATGATTAGTTGAGCTTGCTGTCTCTCCTATCTCAAGCAAACCTGAATGACAATGAAGACTTGGCCGTTTGGAATCTTGAGGGCTCAGGTGTCTTCTCAGTGAAATCTGCCCTCTCGGCCTTGCACAAGAAAAGAAGGTTATTGGAAGCAGCCCTATGTGATCAGATTTGGGAAGGCAAATCTCCTAAAAGGGTGAATGGACTTTATCCCTTCACAGCATTAATACAGTGGATAAGATTCAGAGAAGATATCTTAGCCTTCAAGTTAGCCCCAATGTCTGTGTGATGTGCATGCAAAATGGGGAGTCTGCCTCCCACCTCATGGTGCATTGTGAGTTTGCAGAGAAGGTTTGGAACCACTTTTTTGGAGCCTTTAACCTGGAGGTTTGCAAGCCCAATTGTGTGGTCAGCTGGATGAGCGAAGTTCTCGAAGGCGGGTGTTTCAAAGGCAAAGCTAAAGTTTTGTGGCGTAAGCTCTCTAGGGCTATTGCTGATAAGTTTATGCCTTTCAATATTTTTTGTGACGTTGTACAGCTCTCGGCCTCAGATTGGAGTGCCCAAGATTGTGTTTTTTCTGATTACTCTGCTGCCATGATCAACCTTCATTGGAAGGCTTTTTTGAAGTTCCTCTTGGAGAAGGGATGCCTTATCCCTTTGTCCTTTGATTGTTTTTGA

mRNA sequence

ATGTTCCCCTCATTCTTCCGGCTATCTGGCTCAAAGGACCTAAAAGTCACAAACCTGAATGACAATGAAGACTTGGCCGTTTGGAATCTTGAGGGCTCAGGTGTCTTCTCAGTGAAATCTGCCCTCTCGGCCTTGCACAAGAAAAGAAGCATTAATACAGTGGATAAGATTCAGAGAAGATATCTTAGCCTTCAAGTTAGCCCCAATGTCTGTGTGATGTGCATGCAAAATGGGGAGTCTGCCTCCCACCTCATGGTGCATTGTGAGTTTGCAGAGAAGGTTTGGAACCACTTTTTTGGAGCCTTTAACCTGGAGGTTTGCAAGCCCAATTGTGTGGTCAGCTGGATGAGCGAAGTTCTCGAAGGCGGGTGTTTCAAAGGCAAAGCTAAAGTTTTGTGGCGTAAGCTCTCTAGGGCTATTGCTGATAAGTTTATGCCTTTCAATATTTTTTGTGACGTTGTACAGCTCTCGGCCTCAGATTGGAGTGCCCAAGATTGTGTTTTTTCTGATTACTCTGCTGCCATGATCAACCTTCATTGGAAGGCTTTTTTGAAGTTCCTCTTGGAGAAGGGATGCCTTATCCCTTTGTCCTTTGATTGTTTTTGA

Coding sequence (CDS)

ATGTTCCCCTCATTCTTCCGGCTATCTGGCTCAAAGGACCTAAAAGTCACAAACCTGAATGACAATGAAGACTTGGCCGTTTGGAATCTTGAGGGCTCAGGTGTCTTCTCAGTGAAATCTGCCCTCTCGGCCTTGCACAAGAAAAGAAGCATTAATACAGTGGATAAGATTCAGAGAAGATATCTTAGCCTTCAAGTTAGCCCCAATGTCTGTGTGATGTGCATGCAAAATGGGGAGTCTGCCTCCCACCTCATGGTGCATTGTGAGTTTGCAGAGAAGGTTTGGAACCACTTTTTTGGAGCCTTTAACCTGGAGGTTTGCAAGCCCAATTGTGTGGTCAGCTGGATGAGCGAAGTTCTCGAAGGCGGGTGTTTCAAAGGCAAAGCTAAAGTTTTGTGGCGTAAGCTCTCTAGGGCTATTGCTGATAAGTTTATGCCTTTCAATATTTTTTGTGACGTTGTACAGCTCTCGGCCTCAGATTGGAGTGCCCAAGATTGTGTTTTTTCTGATTACTCTGCTGCCATGATCAACCTTCATTGGAAGGCTTTTTTGAAGTTCCTCTTGGAGAAGGGATGCCTTATCCCTTTGTCCTTTGATTGTTTTTGA

Protein sequence

MFPSFFRLSGSKDLKVTNLNDNEDLAVWNLEGSGVFSVKSALSALHKKRSINTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKVWNHFFGAFNLEVCKPNCVVSWMSEVLEGGCFKGKAKVLWRKLSRAIADKFMPFNIFCDVVQLSASDWSAQDCVFSDYSAAMINLHWKAFLKFLLEKGCLIPLSFDCF

Homology

[Close]

BLAST of Lcy02g000750 vs. ExPASy TrEMBL
Match: A0A443PB79 (Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01698200 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.0e-13
Identity = 59/221 (26.70%), Postives = 92/221 (41.63%), Query Frame = 0


Query: 4   SFFR-LSGSKDLKVTNLNDNEDLAVWNLEGSGVFSVKSALSALHKKRS------------ 63
           SF R L G+K  +  N  +++D  +W    SG FSVK+   AL    S            
Sbjct: 451 SFARYLKGNKSSREQNFLNSKDSRIWKPSISGEFSVKAFYMALQGNLSSTTYFPQSWLGL 510

Query: 64  ----------------INTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKV 123
                           ++T D ++RR L+     ++CVMC +  ES +HL +HCE A  V
Sbjct: 511 VPPRVEVFCWLAILGKVSTADNLRRRGLTSASISDLCVMCQKKEESVNHLFLHCEVAAGV 570

Query: 124 WNHFFGAFNLEVCKPNCVVSWMSEVLEGGCFKGKAKVLWRKL-------------SRAIA 183
           W HF G   +  C P  +    +E   GG F G  + LWR L             +R   
Sbjct: 571 WGHFIGRCGVAWCCPEKIAE-AAEAWMGGHFLGSGRTLWRMLPFVILWSIWRERNNRIFK 630

[Close]

BLAST of Lcy02g000750 vs. ExPASy TrEMBL
Match: A0A3S3R1F6 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02215900 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-12
Identity = 55/202 (27.23%), Postives = 87/202 (43.07%), Query Frame = 0


Query: 22   NEDLAVWNLEGSGVFSVKSALSAL---HKKRS-------------------------INT 81
            ++D  +W    SG FSVK+  SAL   H  R+                         I+T
Sbjct: 983  SKDFRIWKPSISGEFSVKAFYSALEGNHHPRAPSSLVWMGLVPPRVEAFCWLAMAAKIST 1042

Query: 82   VDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKVWNHFFGAFNLEVCKPNCVV 141
             D ++RR L+     + CVMC +  ES +HL +HCEF   VW HF G   ++ C    + 
Sbjct: 1043 ADNLRRRGLTSPTINDTCVMCQKEMESVNHLFLHCEFTSSVWGHFIGRCGVDWCCSEKIA 1102

Query: 142  SWMSEVLEGGCFKGKAKVLWR-------------KLSRAIADKFMPFNIFCDVVQLSASD 183
            + ++E   GGCF G  ++LWR             +  R           F   + L+ + 
Sbjct: 1103 N-VAESWLGGCFVGCGRILWRITLFAILWSIWKERNDRIFRGSSSTSAEFISKITLTIAK 1162

[Close]

BLAST of Lcy02g000750 vs. ExPASy TrEMBL
Match: A5AD48 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_026527 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.8e-11
Identity = 55/204 (26.96%), Postives = 81/204 (39.71%), Query Frame = 0


Query: 24   DLAVWNLEGSGVFSVKSALSAL--------------------------------HKKRSI 83
            D  +W L  SG+FSVKS   AL                                HKK + 
Sbjct: 936  DARLWPLSSSGLFSVKSFFLALSQSAGSPQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNT 995

Query: 84   NTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKVWNHFFGAFNLEVCKPNC 143
            N + +++R Y +L  SP++C++CM++GESA HL +HC     +W+  F    ++   P C
Sbjct: 996  NDMLQVRRPYKAL--SPDICILCMKHGESADHLFLHCSVTIGLWHRLFQLAKMDWVPPRC 1055

Query: 144  VVSWMSEVLEGGCFKGKAKVLWRKLS-------------RAIADKFMPFNIFCDVVQLSA 183
            +   MS   +G     +  VLW+  S             R   DK        D +   A
Sbjct: 1056 IYDMMSIKFKGFGNSKRGIVLWQAASIALIRVVWWERNARIFEDKTRNSGFLWDSIVFLA 1115

[Close]

BLAST of Lcy02g000750 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.5e-11
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 49  RSINTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKVWNHFFGAFNLEVCK 108
           RS+N  +K+QR++ +  +SP++C +C++  E+  HL +HC+FA K WN  F  F L+ C 
Sbjct: 250 RSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCL 309

Query: 109 PNCVVSWMSEVLEGGCFKGKA 130
           P  +   M + L GG F GKA
Sbjct: 310 PKKIDDGMKDGLTGGSFGGKA 330

[Close]

BLAST of Lcy02g000750 vs. ExPASy TrEMBL
Match: A5C7H0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003574 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 48/170 (28.24%), Postives = 77/170 (45.29%), Query Frame = 0


Query: 27  VWNLEGSGVFSVKSAL-SALHKKRSINTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLM 86
           VWN +    F VKS +    HKK + N + +++R Y +L  SP++C++CM++GESA H+ 
Sbjct: 611 VWNSQVP--FKVKSFVWLVAHKKVNTNDMLQVRRPYKAL--SPDICILCMKHGESADHIF 670

Query: 87  VHCEFAEKVWNHFFGAFNLEVCKPNCVVSWMSEVLEGGCFKGKAKVLWRKLS-------- 146
           +HC    ++W+  F    +++  P  +   MS    G     +  VLW+  S        
Sbjct: 671 LHCSLTIRLWHRLFQLAKMDLVPPRSIFDMMSIKFNGFGSSKRGLVLWQAASIALIRVVW 730

Query: 147 -----RAIADKFMPFNIFCDVVQLSASDWSAQDCVFSDYSAAMINLHWKA 183
                R   DK        D +   AS W+    VF      ++ L W A
Sbjct: 731 WERNARIFEDKVRNSEYLWDSIVFLASLWAFYSKVFKGTPLNVLQLDWLA 776

[Close]

BLAST of Lcy02g000750 vs. NCBI nr
Match: RWR88006.1 (putative UDP-rhamnose:rhamnosyltransferase 1 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-12
Identity = 59/221 (26.70%), Postives = 92/221 (41.63%), Query Frame = 0


Query: 4   SFFR-LSGSKDLKVTNLNDNEDLAVWNLEGSGVFSVKSALSALHKKRS------------ 63
           SF R L G+K  +  N  +++D  +W    SG FSVK+   AL    S            
Sbjct: 451 SFARYLKGNKSSREQNFLNSKDSRIWKPSISGEFSVKAFYMALQGNLSSTTYFPQSWLGL 510

Query: 64  ----------------INTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKV 123
                           ++T D ++RR L+     ++CVMC +  ES +HL +HCE A  V
Sbjct: 511 VPPRVEVFCWLAILGKVSTADNLRRRGLTSASISDLCVMCQKKEESVNHLFLHCEVAAGV 570

Query: 124 WNHFFGAFNLEVCKPNCVVSWMSEVLEGGCFKGKAKVLWRKL-------------SRAIA 183
           W HF G   +  C P  +    +E   GG F G  + LWR L             +R   
Sbjct: 571 WGHFIGRCGVAWCCPEKIAE-AAEAWMGGHFLGSGRTLWRMLPFVILWSIWRERNNRIFK 630

[Close]

BLAST of Lcy02g000750 vs. NCBI nr
Match: RWR92932.1 (hypothetical protein CKAN_02215900 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-12
Identity = 55/202 (27.23%), Postives = 87/202 (43.07%), Query Frame = 0


Query: 22   NEDLAVWNLEGSGVFSVKSALSAL---HKKRS-------------------------INT 81
            ++D  +W    SG FSVK+  SAL   H  R+                         I+T
Sbjct: 983  SKDFRIWKPSISGEFSVKAFYSALEGNHHPRAPSSLVWMGLVPPRVEAFCWLAMAAKIST 1042

Query: 82   VDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKVWNHFFGAFNLEVCKPNCVV 141
             D ++RR L+     + CVMC +  ES +HL +HCEF   VW HF G   ++ C    + 
Sbjct: 1043 ADNLRRRGLTSPTINDTCVMCQKEMESVNHLFLHCEFTSSVWGHFIGRCGVDWCCSEKIA 1102

Query: 142  SWMSEVLEGGCFKGKAKVLWR-------------KLSRAIADKFMPFNIFCDVVQLSASD 183
            + ++E   GGCF G  ++LWR             +  R           F   + L+ + 
Sbjct: 1103 N-VAESWLGGCFVGCGRILWRITLFAILWSIWKERNDRIFRGSSSTSAEFISKITLTIAK 1162

[Close]

BLAST of Lcy02g000750 vs. NCBI nr
Match: CAN62318.1 (hypothetical protein VITISV_026527 [Vitis vinifera])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-10
Identity = 55/204 (26.96%), Postives = 81/204 (39.71%), Query Frame = 0


Query: 24   DLAVWNLEGSGVFSVKSALSAL--------------------------------HKKRSI 83
            D  +W L  SG+FSVKS   AL                                HKK + 
Sbjct: 936  DARLWPLSSSGLFSVKSFFLALSQSAGSPQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNT 995

Query: 84   NTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKVWNHFFGAFNLEVCKPNC 143
            N + +++R Y +L  SP++C++CM++GESA HL +HC     +W+  F    ++   P C
Sbjct: 996  NDMLQVRRPYKAL--SPDICILCMKHGESADHLFLHCSVTIGLWHRLFQLAKMDWVPPRC 1055

Query: 144  VVSWMSEVLEGGCFKGKAKVLWRKLS-------------RAIADKFMPFNIFCDVVQLSA 183
            +   MS   +G     +  VLW+  S             R   DK        D +   A
Sbjct: 1056 IYDMMSIKFKGFGNSKRGIVLWQAASIALIRVVWWERNARIFEDKTRNSGFLWDSIVFLA 1115

[Close]

BLAST of Lcy02g000750 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-10
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 49  RSINTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLMVHCEFAEKVWNHFFGAFNLEVCK 108
           RS+N  +K+QR++ +  +SP++C +C++  E+  HL +HC+FA K WN  F  F L+ C 
Sbjct: 250 RSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCL 309

Query: 109 PNCVVSWMSEVLEGGCFKGKA 130
           P  +   M + L GG F GKA
Sbjct: 310 PKKIDDGMKDGLTGGSFGGKA 330

[Close]

BLAST of Lcy02g000750 vs. NCBI nr
Match: RVW89856.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-10
Identity = 48/170 (28.24%), Postives = 77/170 (45.29%), Query Frame = 0


Query: 27  VWNLEGSGVFSVKSAL-SALHKKRSINTVDKIQRRYLSLQVSPNVCVMCMQNGESASHLM 86
           VWN +    F VKS +    HKK + N + +++R Y +L  SP++C++CM++GESA H+ 
Sbjct: 528 VWNSQVP--FKVKSFVWLVAHKKVNTNDMLQVRRPYKAL--SPDICILCMKHGESADHIF 587

Query: 87  VHCEFAEKVWNHFFGAFNLEVCKPNCVVSWMSEVLEGGCFKGKAKVLWRKLS-------- 146
           +HC    ++W+  F    +++  P  +   MS    G     +  VLW+  S        
Sbjct: 588 LHCSLTIRLWHRLFQLAKMDLVPPRSIFDMMSIKFNGFGSSKRGLVLWQAASIALIRVVW 647

Query: 147 -----RAIADKFMPFNIFCDVVQLSASDWSAQDCVFSDYSAAMINLHWKA 183
                R   DK        D +   AS W+    VF      ++ L W A
Sbjct: 648 WERNARIFEDKVRNSEYLWDSIVFLASLWAFYSKVFKGTPLNVLQLDWLA 693

The following BLAST results are available for this feature:

BLAST of Lcy02g000750 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g000750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A443PB79	8.0e-13	26.70	Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Cinnamomum micranthum f. kanehir...	[more]
A0A3S3R1F6	1.8e-12	27.23	Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_...	[more]
A5AD48	5.8e-11	26.96	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A5D3E632	7.5e-11	40.74	Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059...	[more]
A5C7H0	1.7e-10	28.24	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003574 PE=4 SV=1	[more]

BLAST of Lcy02g000750 vs. NCBI nr


Match Name	E-value	Identity	Description
RWR88006.1	1.7e-12	26.70	putative UDP-rhamnose:rhamnosyltransferase 1 [Cinnamomum micranthum f. kanehirae...	[more]
RWR92932.1	3.7e-12	27.23	hypothetical protein CKAN_02215900 [Cinnamomum micranthum f. kanehirae]	[more]
CAN62318.1	1.2e-10	26.96	hypothetical protein VITISV_026527 [Vitis vinifera]	[more]
TYK31299.1	1.6e-10	40.74	protein FAM91A1 [Cucumis melo var. makuwa]	[more]
RVW89856.1	3.5e-10	28.24	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of Lcy02g000750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 36..95 e-value: 1.4E-8 score: 35.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g000750.1	Lcy02g000750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity