Lcy01g019300 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g019300
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPGG domain-containing protein
LocationChr01: 40766471 .. 40768118 (-)
RNA-Seq ExpressionLcy01g019300
SyntenyLcy01g019300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAATAACGGAATAAGCAATGAAGCCATGCCAAATAATGAAAGCAATGAAGCTCAGAACTCAGAGAAGACTTGGCAGAAGAGTGACAATGAGTTTCTTTTGGTAGTGGTAACGTTCGTGGCAACGGTTGCTTTTCAAGCTGGGTTGAACCCTCCCGGTGGTGTCTGGCAAGACGATAAGGACCCCAGGAATGCAAGAGCAGAGTCGAGGAAAAAGAAAAAGGTTAAATTATTAAAAATACATCGTCATTTTCTGTCCATGAATTTAACCAATAAATACTTTCCATAGTTTAGAGGTATTTTTAATAATTTAACCAAAAGTATTAAATAATACGAGGTTTCATCTCAAAACCAATTGGTCAATGAGTGGCTTATAATTGGCCAATATGTCCCCTCAAGATGGTGTGCCTTTTTAGGTTATCCATGCTTGAATTAGATTTTTTTTTCTTGACTGAATACCCATTTGGGATTTTATGGACTCTGATACCATGAGAAACGAAGATGCAAAAAGAGAGAAAAAAAAAATTCTTAAACAAAATGGTCAGTATAACCGCTAACAATACTTGACTGCACCTAAACTTTCAAAAGTTTCATTTTTAACTCTTGAAGTTTGAAGTTTGTTTCAAAACGACCCTTAAAGACATTTTCTGTTAAATTTATGGACGAAAAATGATGTGTTTGCACGTGTTTTTATTGATTTTTCCACGCATATGTTCAAACATGTTCACATAAGCGCAACAATACATATGCAAACACGTCATTTTTCCGTCCACAAATTTAATCGAAAAATGCTTTCAATGGTTGTTTTGAAACAAATTTCAAACTTCCAGAGCTAAAATGAAACTTTTGAAAATTTATAATTGAAACCAATCTCATAGTTTAGAGGTATTTTTAATAATTTAACCAAACAAAATAGTCAGTACACTTCTAGAACAATACTTGACTACACGTAGGAATCTCATACACACTCCATTAAAATCTTGACAACTAAGAAAAAAAAAAGTTAAGGTCTTGTTTGATAACCATTTGGTTTTTGGTTTTTAAAAATTATGCTTGTTTTCTCCCAATTTTCTTATCATGATTTTCATCTTTGCTAAGCACACACTTGAATTCTTAGCCAAATTCTAAAATTACTTTTTTTTTTGGTTTTGGAAACATGGGAAGATGATAATTAAATGACAAAACAAACAAACTTATAGGTGGTAGTAGTGTTCATAGGTTTAATTTTCAAAAACCAAAAATAAAAAATTATCAAACGGGACAGAATTTTTTTTATAAAATTTTATTGTCCTAACAAGCATCTGTTTACCAAATTTAAGAGTAAATTTCGAGTTTCTTCTTATATTTTTTTCCCCAAAATTTCTTCTCATCTCAAGGTATGAAGCAGGGAAATCGATAATGGCCTCAAAACACCCATCTTTGTTCGTCACTTTCATCGCGGGCGTAACAACGTGCCTGGTAATTTCAGTGGTGCAAATTCTGGCACTGATGTCGGAGTTGCCTTCCACGAGGCAGATTTCGAGGAACTTCCAGTACGTCAGTTTGGGCCTCGTAATAAGCGGCATGGCTCCGGCTTATTGGTCCGCAATAACAGCTGCGACGCCACAGCCGCTGATGCAGCAGGTCACCATTACTCTGGTCACTAA

mRNA sequence

ATGTCAAATAACGGAATAAGCAATGAAGCCATGCCAAATAATGAAAGCAATGAAGCTCAGAACTCAGAGAAGACTTGGCAGAAGAGTGACAATGAGTTTCTTTTGGTAGTGGTAACGTTCGTGGCAACGGTTGCTTTTCAAGCTGGGTTGAACCCTCCCGGTGGTGTCTGGCAAGACGATAAGGACCCCAGGAATGCAAGAGCAGAGGAAATCGATAATGGCCTCAAAACACCCATCTTTGTTCGTCACTTTCATCGCGGGCGTAACAACGTGCCTGGTAATTTCAGTGGTGCAAATTCTGGCACTGATGTCGGAGTTGCCTTCCACGAGGCAGATTTCGAGGAACTTCCAGTACGTCAGTTTGGGCCTCGTAATAAGCGGCATGGCTCCGGCTTATTGGTCCGCAATAACAGCTGCGACGCCACAGCCGCTGATGCAGCAGGTCACCATTACTCTGGTCACTAA

Coding sequence (CDS)

ATGTCAAATAACGGAATAAGCAATGAAGCCATGCCAAATAATGAAAGCAATGAAGCTCAGAACTCAGAGAAGACTTGGCAGAAGAGTGACAATGAGTTTCTTTTGGTAGTGGTAACGTTCGTGGCAACGGTTGCTTTTCAAGCTGGGTTGAACCCTCCCGGTGGTGTCTGGCAAGACGATAAGGACCCCAGGAATGCAAGAGCAGAGGAAATCGATAATGGCCTCAAAACACCCATCTTTGTTCGTCACTTTCATCGCGGGCGTAACAACGTGCCTGGTAATTTCAGTGGTGCAAATTCTGGCACTGATGTCGGAGTTGCCTTCCACGAGGCAGATTTCGAGGAACTTCCAGTACGTCAGTTTGGGCCTCGTAATAAGCGGCATGGCTCCGGCTTATTGGTCCGCAATAACAGCTGCGACGCCACAGCCGCTGATGCAGCAGGTCACCATTACTCTGGTCACTAA

Protein sequence

MSNNGISNEAMPNNESNEAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDDKDPRNARAEEIDNGLKTPIFVRHFHRGRNNVPGNFSGANSGTDVGVAFHEADFEELPVRQFGPRNKRHGSGLLVRNNSCDATAADAAGHHYSGH
Homology
BLAST of Lcy01g019300 vs. ExPASy TrEMBL
Match: A0A6J1I8P6 (uncharacterized protein LOC111471995 OS=Cucurbita maxima OX=3661 GN=LOC111471995 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-10
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 9  EAMPNNESN--EAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDD 61
          E  PN   N  E QN E+TWQK D E+LLVVVTF+ATVAFQAG++PPGGVWQ D
Sbjct: 7  EEAPNQIGNGREDQNKEETWQKRDREYLLVVVTFMATVAFQAGVSPPGGVWQQD 60

BLAST of Lcy01g019300 vs. ExPASy TrEMBL
Match: A0A6J1GBC1 (uncharacterized protein LOC111452618 OS=Cucurbita moschata OX=3662 GN=LOC111452618 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.7e-10
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 9  EAMPNNESN--EAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDD 61
          E  PN   N  E QN E+TWQK D E+LL+VVTF+ATVAFQAG++PPGGVWQ D
Sbjct: 20 EEAPNQIGNGGEDQNKEETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQD 73

BLAST of Lcy01g019300 vs. ExPASy TrEMBL
Match: A0A6J1BR52 (uncharacterized protein LOC111005012 OS=Momordica charantia OX=3673 GN=LOC111005012 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 13 NNESNEAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDDKDPRNARAEEI 72
          +++ N A +S   W + + E L+VV TFVA  AFQAG+NPPGGVWQDD DPR    + I
Sbjct: 20 DDDRNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSI 78

BLAST of Lcy01g019300 vs. ExPASy TrEMBL
Match: A0A5A7VFP9 (Ankyrin repeat-containing protein ITN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00240 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.6e-08
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 21 NSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDDKD 63
          +SEK+WQK+D E L+V++TF+ T++FQAG NPPGGVWQD  +
Sbjct: 20 SSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDGSE 61

BLAST of Lcy01g019300 vs. ExPASy TrEMBL
Match: A0A1S4DVK4 (uncharacterized protein LOC103488514 OS=Cucumis melo OX=3656 GN=LOC103488514 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.6e-08
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 21 NSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDDKD 63
          +SEK+WQK+D E L+V++TF+ T++FQAG NPPGGVWQD  +
Sbjct: 20 SSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQDGSE 61

BLAST of Lcy01g019300 vs. NCBI nr
Match: XP_023523648.1 (uncharacterized protein LOC111787821 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-12
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 9  EAMPNNESN--EAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDDKDPRNA 68
          E  PN   N  E QN E+TWQK D E+LLVVVTF+ATVAFQAG++PPGGVWQ  +D +N+
Sbjct: 7  EEAPNQIGNGREDQNKEETWQKRDREYLLVVVTFMATVAFQAGVSPPGGVWQ--QDDKNS 66

Query: 69 RAEEIDNGLKTP 79
          R  +IDNG K P
Sbjct: 67 R--DIDNGHKIP 74

BLAST of Lcy01g019300 vs. NCBI nr
Match: XP_023523647.1 (uncharacterized protein LOC111787821 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-12
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 9  EAMPNNESN--EAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDDKDPRNA 68
          E  PN   N  E QN E+TWQK D E+LLVVVTF+ATVAFQAG++PPGGVWQ D D  ++
Sbjct: 7  EEAPNQIGNGREDQNKEETWQKRDREYLLVVVTFMATVAFQAGVSPPGGVWQQD-DKNSS 66

Query: 69 RAEEIDNGLKTP 79
          R  +IDNG K P
Sbjct: 67 R--DIDNGHKIP 75

BLAST of Lcy01g019300 vs. NCBI nr
Match: XP_022973456.1 (uncharacterized protein LOC111471995 [Cucurbita maxima])

HSP 1 Score: 75.1 bits (183), Expect = 5.9e-10
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 9  EAMPNNESN--EAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDD 61
          E  PN   N  E QN E+TWQK D E+LLVVVTF+ATVAFQAG++PPGGVWQ D
Sbjct: 7  EEAPNQIGNGREDQNKEETWQKRDREYLLVVVTFMATVAFQAGVSPPGGVWQQD 60

BLAST of Lcy01g019300 vs. NCBI nr
Match: XP_023523646.1 (uncharacterized protein LOC111787821 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.1 bits (183), Expect = 5.9e-10
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 9  EAMPNNESN--EAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDD 61
          E  PN   N  E QN E+TWQK D E+LLVVVTF+ATVAFQAG++PPGGVWQ D
Sbjct: 7  EEAPNQIGNGREDQNKEETWQKRDREYLLVVVTFMATVAFQAGVSPPGGVWQQD 60

BLAST of Lcy01g019300 vs. NCBI nr
Match: KAG6607507.1 (hypothetical protein SDJN03_00849, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-10
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 9  EAMPNNESN--EAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDD 61
          E  PN   N  E QN E+TWQK D E+LL+VVTF+ATVAFQAG++PPGGVWQ D
Sbjct: 7  EEAPNQIGNGREDQNKEETWQKRDREYLLIVVTFMATVAFQAGVSPPGGVWQQD 60

BLAST of Lcy01g019300 vs. TAIR 10
Match: AT5G51160.1 (Ankyrin repeat family protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05
Identity = 24/64 (37.50%), Postives = 31/64 (48.44%), Query Frame = 0

Query: 34  LLVVVTFVATVAFQAGLNPPGGVWQDDKDPRNARAEEIDNGLKTPIFVRHFHRGRNNVPG 93
           LLVV + VAT  FQA L PPGG WQD   P  ++     N        +  H    ++ G
Sbjct: 274 LLVVASLVATATFQASLTPPGGTWQDSSIPAVSQ-----NTTNVNTTNQQAHTAGQSIMG 332

Query: 94  NFSG 98
            F+G
Sbjct: 334 TFNG 332

BLAST of Lcy01g019300 vs. TAIR 10
Match: AT4G11000.1 (Ankyrin repeat family protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.0e-04
Identity = 23/60 (38.33%), Postives = 31/60 (51.67%), Query Frame = 0

Query: 5   GISNEAMPNNESNEAQNSEKTWQKSDNEFLLVVVTFVATVAFQAGLNPPGGVWQDDKDPR 64
           G+SN +M  + S  A +            +LVV   + T  +QAGL+PPGG WQD  D R
Sbjct: 233 GLSNLSMTKDRSINASDPRNA--------ILVVAILIVTATYQAGLSPPGGFWQDTNDGR 284

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1I8P62.9e-1068.52uncharacterized protein LOC111471995 OS=Cucurbita maxima OX=3661 GN=LOC111471995... [more]
A0A6J1GBC13.7e-1066.67uncharacterized protein LOC111452618 OS=Cucurbita moschata OX=3662 GN=LOC1114526... [more]
A0A6J1BR522.7e-0852.54uncharacterized protein LOC111005012 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A5A7VFP94.6e-0861.90Ankyrin repeat-containing protein ITN1-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DVK44.6e-0861.90uncharacterized protein LOC103488514 OS=Cucumis melo OX=3656 GN=LOC103488514 PE=... [more]
Match NameE-valueIdentityDescription
XP_023523648.12.2e-1262.50uncharacterized protein LOC111787821 isoform X3 [Cucurbita pepo subsp. pepo][more]
XP_023523647.13.7e-1262.50uncharacterized protein LOC111787821 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022973456.15.9e-1068.52uncharacterized protein LOC111471995 [Cucurbita maxima][more]
XP_023523646.15.9e-1068.52uncharacterized protein LOC111787821 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6607507.17.7e-1066.67hypothetical protein SDJN03_00849, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT5G51160.16.1e-0537.50Ankyrin repeat family protein [more]
AT4G11000.14.0e-0438.33Ankyrin repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 25..66
e-value: 6.0E-12
score: 45.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g019300.1Lcy01g019300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane