Lcy01g018580 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g018580
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Location	Chr01: 40043598 .. 40049084 (+)
RNA-Seq Expression	Lcy01g018580
Synteny	Lcy01g018580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGAACTGTAGTTGTCGCTTGCAAGGTACTTGAGGTAGTTGACGGCGTATCTGACTAGTTTCGGAACTGAGCCGTCTTTTGGAGGAGGAAATCCGTCTGCATTGCCCTCGATTTGGAGGCCGAAATCCCAAAAGACTTTGCTGGATGCGTGCACGAGTAGCTTCTCGAGCTCTCTGTATCGTGTACGGATTTCGGTGCCGGATTCGCCGTCGAATGCCTCGGAGAATTCGGAGTTGAGTTTTTCCATGGAGTCGAACATGTCCAAGAGCTTGAACAGCTTCTGCGGCTCTTTGGTGCTCCTGGCAACGCCTTCCCCAAACCGGAAGAAGACGGCCATGATTTTGTCCGCGATCTTCACGAAGCATTCAGGCCACATCAGTCCGTCCATGATTGAGCCCAAAACCTGGCTACATAGTCTCTTCTCGGAAACCAACACGCTGGTCGCTGCGACCTTGAAGTGTTCAATCCACAGAGAAATTGCCGTCTCCAATTTTTCCCACTCCATCTTGTCAATTTCTTCTGGAGTATATGTTTTGAGATAGACTGGATTGAGTCGCATCAATGCTGTAGCTGCTCTTCTGTATCTAACCTGATTTGAGAACGATAGTTTTAGCATTTGCAACACCTTTTTTCTTCAGTAATTTTTTGAACTTCTTTTTTTTCTTTTTAACCTGATTTAAGAACGATAGTTTTAGAAAAAAATTATCGCAAGTACCTTGACGTAAATGTTGATGCAAATATCCAAACAATCATTGGCAGCAAGAGTTTCAGAAATTCGTTTAGCAGCTTCAATCTCCAACTCGCTTCCCATCTCAGACCCCACTGCTTCACCTTCTTTTTCTCCTTCGACATCTTGAAACTTCGGTTTTCTTTGATGCTTTAAATTTTTTAGTATGTTTTCAAATTCATCTTGCAGACTCAGCAGGGATTCGTCAAGCAATCCCTCAAACTTCATGTCATCAATTTCTGTTTCATACAGAGCTTTGAGAGTGATCATCGTCTCTTTGAGTCTGTGTGTCCGCTGTGGATCAGCAGCCTTCGTCCTGCTCAAGAACTCCACCACCTCTTGAAGTTTCTGGATCACCGATTCGCCCTCTTCGCTAATCAAGCTTATGGATGCATTGAGCCTATCCACACAGTTGACTAGTTTGATTATCTTCTTCAAGCGTTCGTGTGGCGATTTTTCCACTGATAAATTGGCAAAGATCGCGAGAATCTTGCGTTGGAGAAACTCGGATCGCTTAAAAGAATCGAGGAGAACGAGAGCAGGCGAAGCTGCCCGATTGATTCTCGTTTCGAGAGCTTTTGTCGTCATCGCCAAAGATTGTAGAGGTATTATGCTTCTCGATGCCGTTGCAAGCGATTCGTCGATTGAATCAAGGCTCTTCTCCATCCTCTCCAAGCTTTCATTCAATTCCGCCGAGGCTTGAAGGAGGATTTTCAAATCCGAACATGCTGATTCGAGCTTCTGCATCCTCGAGTCCTCCTCCTCCCTCGGCGCCATTGTTACTACTCCCTGACTCAAGACTCCAAAATTGCGAAGAGATATAGGATCAACGACGAACACGATGCAAGGGGGCAACATAATACGACGAGAAGTATTACATTTGCCAACTGGAGCTCCGATGTAAACTAAGAACAAATGGCGTTTACTGATCGAAAACGGACAAATTCATACTAAGAAGCTGAGAATATGCAGAGCCGGTTGAAGGCAACTCCTCGAGAATCAGTCCAAACAATCTACCTAGCTCCATATTTCTGATCCACATAAAGACATATATCACATCATCACGCTTCGTCGCGATCAGACACGGTCAAATTTTGTCTCTGTGACGCCAAATTTTTAGAATCCGACGACTTTTTGCAAGGTTTCCATGCCGCCGGCAAAGGCGTCTTTGAGCAGATGTTTGTCGGTTTCCGAGCTCGGAATAGCATTCCATTCCGCTCGTATTCTTTTGTTGGAAGAACCTGAACTCTACCCGGTTCTGCACGAGTAGCAACAATTTAACTAGTATAATTTAAATTACTTCTTTGATTATTCCATATTAGTTGTTGCCTCCAAATGCCATGCAAAATGGCAAAATCACTGTGGAGCCAAGTTTCTTTGTCGAATGTTCTTGAAATTGTAGACGTGGCTGGCGTGGGCGCGCCCTATTCGTTGAAAAATCTCCAGCAGGGCAAAGGACTAGTTAGAAGCATCGCCTTTCTGGAAGCTTCGCGTTTTCTTGCGATTGATCGGGACTGTTATAAGCCCATCGGCGAGGAAAATGCGATTGAAAAGCAGTAATTACTCTGGGGATAGAGGAATCTGGTGGTCGTCGAGGCTAAAAGATGGCGAGCTCTGTGCTACGTAGGTACAATCTTGTTCGTTGGAATCGATCAGCTTTTGTTCATTGGAGAAGACTGCTTTCCTCGAGTTCCGACTCCGTGGTGGAGTTCAAGCCAGGGGAGATCGGCATAGTCTCCGGTATCCCTGAAGAGAATCTCCGTCGTCGGGTATGCATTTTAAGCGGTTGCTCTCCGTTTTTTGCTCTTCGTTTAGTTTAGTTTCGGATAGGTTAAAAATGTCTTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAACATGAAAAAAGTCTTGAAACTTTAAACTAACAATTTAGTCCTCAAATATATATTTATTTATTTATTTTTTTTTTTTTTAAAGTTTAGCAACCTTTGAACTTAAAAATATTTACTTTTAAGCTAGGTTCATTGTCGGTTTGAACTCCATAGTTTATAAACATATTTGTTCTCTAATTAATTTTTGGTTAAATGTTAAGTTTAATCATTGAACTTTCACATTGGTGTCTTTAGTTTTTAAACTTTAAAAAATGTCTTTATGCATAATAGATTTCTAAACCTATTTGAAATTTTTAAAAATTAATTGATTTATTAGATATGAAATTGAATTGGTTAAATTACAAGTTTAGTCCCTAAACTTTCAAGGTTGTATCAATTTGGTCCCTGAACTTTAAAAAGTGTTTAATAGGTTCTTGAACTTGTAATTTTGTGTCTAATAGGTCCCTAAACTTTAAAAATGTCTAATAGATCTTTGAATTTATAATTTTATATCTAATAGGTCTCTAACATGTTCAAGATTTTTAAAATTAATTGATCTATTAGATATAAAATAGAATTTTATGCCTATTGGGACTCTAAACTTCCAATTTTGTATCTAGTAGACTTGTTAATTTAAAAAAAAAAATGTTGAATTGATCAAGGACTTATTAGACATAAAGTTGAGAGTTGAGGAACCTATTGGACCCAAAAGTGAAAGTTTAAAGACTTACTGAATACTTTTTAAAGTGTAGGGACTTACTAGACACAAAATTGAAATTACAAGGATTCATTTGACACTTTTTAAAGTTCAAAGAACCATATTGAACTTTCAAAGTTCAAGGACTAAATTTGTAATTGAACCAATTGAATTTTATGTCTAATGGAATCCTAAACCTTCGATTTTATGTCTAATAGATTCGTGGATTTTAAAAAACCTTGAATAGATGAAGGATTTATCACATATAAAATTAATAATTCAAGAAACTATTGGACACTTCTTTAAAAAAAAAATAATAATAACTATTATTGGACACAAAATTGAAGGTTAAAGAACTTTGTTTGAATCAAATAAACACAAATTTGAAAGTTTAAGATCGTGATACTTTTTAAATTTAGAGCAAAAGACCAACCTGAAAATTGAAGTCTAAACTAAATCATTTGTAAAAATTCTTAAAATTGTTTCTTAAAGGAATGGAAGATTTAGACTAAATTTTTGTAGTTTAGAAATGTAAGTGTTTCTTAACCGTTTACTTAATCTTGAAGTTCTGTTGTATAGTTGATTTTCAAAGAATCTTGGAAAGAGAGTCAAATATAACCGTCAGATTCGAGATATGAACTCGAATCAGATTTAGCTCCATTTAGGAATTAGAGCGGAAATTTTTACTTTGTAAGGAAAACTTTGCTGCATGAGGGTTTATCATGGTGGATTTGTGGAATTACCATGCATTTGAGCTTATGGAGGAACTGATTGGATTGTCTTCCTTTATTTTGCAGGTTATAATCTACTCACCTGCTAGAACCGCCACACAGCAAGGCTCTGGGAAAGTTGGGAAATGGAAGATTAATTTTCTCTCCACACACAAGTATGATTTCTTCAATTGCAAAGCCCGGCCTGACTCCTCTGTTCTCTTGATCCTTTTCCTATATCAATTGATGCATATTTTATCTTATATCATACCTCATAGTTTACATACGATTTATGACATTTATTCACCATTTCTCATTACGGCAAGTCATTCCTCTAGCCTCGGACTAGAGAAAAAGAACTGAGATGAAATTCTGGATATTCAAAAACTGTCAAGTCCATGTAAAAATTGATTCTCTTGGCATTTATCCAGCTTTGGATTCACTCCATTGGATTTCGGTTTTGTTCTCATGCATTTTCAAGATATTTAGAACTGAAAGCAATTATTAATTAGCAAGCGTGCTGACTACTGGATTGGATTCCATTTTCTTTAGTTCATAGCTATTTTAGGTATCGTGAACTGATCGCCCTTTCTTATCTGGCTCCATTTGTTTAGGTGGGAAAACCCCTTGATGGGATGGACATCCACAGGAGACCCATATGCTAATGTCGGCGATGCAGCCCTTAGTTTTGATACTGCAGAAGCTGCAATGACGTTTGCTGAAAAGCATGGCTGGCAATACGAGGTTTCACTGAAATTTTGTTATCATTTACAATTGATACAGTTTCTGGGGCTTCCTTGCTCTTAAAATTGAAACAGAAACAATTTATGTTCTGTAATCAGAGTCGCTAACTTCTATTGTAGGTTAAGAAGCGTCAGACACCAATTCTTAAGGTAAAGTTATTGTTGATTAATAACCGAAACTACTCTTTCATGCTGCCCCCGTTAGTGTTTTCAGCATATACTTGACCAAAAAAGCTTCAGGTTCTTTCTTCAACAGCCAAATTGTTTTTATCACTAATTCTTATGAGTTGGAGAAGAATTTAGAAATCACCCTATGTGGTTTGTCTACTATTTTATACACAATTCCTATGCATTTTCCTGATGATAATCCACATTGATATAATTAAATTTGTCGTAACTTTCACTTTTAGGTTCAGAGATGATTCAACATGATATCAGAATAAGATGTCAGGTATTCGAACTCCTGTAAAGTCATTTTCTCTTCAATTAATATTGATTTCCACCTATTGAGCTTTCTACAAATTTTCAAGTCCACAAGTGACTTTTGAGTTCAATGGTGATTTAACACCAAGCACCTCTAGAGATAATACCATTCCATTAAAAACTTAGATTTATTGCAAGTTTAGTCTTTGAACTTTCAAGGTCGTATTAGGTCCTTGGACCCTGACATATTCGAAAATTTTAAAAATTAGGTCCCTGAATTTTCAATTTTGTGTGTAATAGGTCCCTGACATATTTGAATTAAAAT

mRNA sequence

GCGGAACTGTAGTTGTCGCTTGCAAGGTACTTGAGGTAGTTGACGGCGTATCTGACTAGTTTCGGAACTGAGCCGTCTTTTGGAGGAGGAAATCCGTCTGCATTGCCCTCGATTTGGAGGCCGAAATCCCAAAAGACTTTGCTGGATGCGTGCACGAGTAGCTTCTCGAGCTCTCTGTATCGTGTACGGATTTCGGTGCCGGATTCGCCGTCGAATGCCTCGGAGAATTCGGAGTTGAGTTTTTCCATGGAGTCGAACATGTCCAAGAGCTTGAACAGCTTCTGCGGCTCTTTGGTGCTCCTGGCAACGCCTTCCCCAAACCGGAAGAAGACGGCCATGATTTTGTCCGCGATCTTCACGAAGCATTCAGGCCACATCAGTCCGTCCATGATTGAGCCCAAAACCTGGCTACATAGTCTCTTCTCGGAAACCAACACGCTGGTCGCTGCGACCTTGAAGTGTTCAATCCACAGAGAAATTGCCGTCTCCAATTTTTCCCACTCCATCTTGTCAATTTCTTCTGGAGTATATGTTTTGAGATAGACTGGATTGAGTCGCATCAATGCTGTAGCTGCTCTTCTGTATCTAACCTGATTTGAGAACGATAGTTTTAGCATTTGCAACACCTTTTTTCTTCAGTAATTTTTTGAACTTCTTTTTTTTCTTTTTAACCTGATTTAAGAACGATAGTTTTAGAAAAAAATTATCGCAAGTACCTTGACGTAAATGTTGATGCAAATATCCAAACAATCATTGGCAGCAAGAGTTTCAGAAATTCGTTTAGCAGCTTCAATCTCCAACTCGCTTCCCATCTCAGACCCCACTGCTTCACCTTCTTTTTCTCCTTCGACATCTTGAAACTTCGGTTTTCTTTGATGCTTTAAATTTTTTAGTATGTTTTCAAATTCATCTTGCAGACTCAGCAGGGATTCGTCAAGCAATCCCTCAAACTTCATGTCATCAATTTCTGTTTCATACAGAGCTTTGAGAGTGATCATCGTCTCTTTGAGTCTGTGTGTCCGCTGTGGATCAGCAGCCTTCGTCCTGCTCAAGAACTCCACCACCTCTTGAAGTTTCTGGATCACCGATTCGCCCTCTTCGCTAATCAAGCTTATGGATGCATTGAGCCTATCCACACAGTTGACTAGTTTGATTATCTTCTTCAAGCGTTCGTGTGGCGATTTTTCCACTGATAAATTGGCAAAGATCGCGAGAATCTTGCGTTGGAGAAACTCGGATCGCTTAAAAGAATCGAGGAGAACGAGAGCAGGCGAAGCTGCCCGATTGATTCTCGTTTCGAGAGCTTTTGTCGTCATCGCCAAAGATTGTAGAGGTATTATGCTTCTCGATGCCGTTGCAAGCGATTCGTCGATTGAATCAAGGCTCTTCTCCATCCTCTCCAAGCTTTCATTCAATTCCGCCGAGGCTTGAAGGAGGATTTTCAAATCCGAACATGCTGATTCGAGCTTCTGCATCCTCGAGTCCTCCTCCTCCCTCGGCGCCATTGTTACTACTCCCTGACTCAAGACTCCAAAATTGCGAAGAGATATAGGATCAACGACGAACACGATGCAAGGGGGCAACATAATACGACGAGAAGTATTACATTTGCCAACTGGAGCTCCGATGTAAACTAAGAACAAATGGCGTTTACTGATCGAAAACGGACAAATTCATACTAAGAAGCTGAGAATATGCAGAGCCGGTTGAAGGCAACTCCTCGAGAATCAGTCCAAACAATCTACCTAGCTCCATATTTCTGATCCACATAAAGACATATATCACATCATCACGCTTCGTCGCGATCAGACACGGTCAAATTTTGTCTCTGTGACGCCAAATTTTTAGAATCCGACGACTTTTTGCAAGGTTTCCATGCCGCCGGCAAAGGCGTCTTTGAGCAGATGTTTGTCGGTTTCCGAGCTCGGAATAGCATTCCATTCCGCTCGTATTCTTTTGTTGGAAGAACCTGAACTCTACCCGGTTCTGCACGAGTAGCAACAATTTAACTAGTATAATTTAAATTACTTCTTTGATTATTCCATATTAGTTGTTGCCTCCAAATGCCATGCAAAATGGCAAAATCACTGTGGAGCCAAGTTTCTTTGTCGAATGTTCTTGAAATTGTAGACGTGGCTGGCGTGGGCGCGCCCTATTCGTTGAAAAATCTCCAGCAGGGCAAAGGACTAGTTAGAAGCATCGCCTTTCTGGAAGCTTCGCGTTTTCTTGCGATTGATCGGGACTGTTATAAGCCCATCGGCGAGGAAAATGCGATTGAAAAGCAGTAATTACTCTGGGGATAGAGGAATCTGGTGGTCGTCGAGGCTAAAAGATGGCGAGCTCTGTGCTACGTAGGTACAATCTTGTTCGTTGGAATCGATCAGCTTTTGTTCATTGGAGAAGACTGCTTTCCTCGAGTTCCGACTCCGTGGTGGAGTTCAAGCCAGGGGAGATCGGCATAGTCTCCGGTATCCCTGAAGAGAATCTCCGTCGTCGGGTTATAATCTACTCACCTGCTAGAACCGCCACACAGCAAGGCTCTGGGAAAGTTGGGAAATGGAAGATTAATTTTCTCTCCACACACAAGTGGGAAAACCCCTTGATGGGATGGACATCCACAGGAGACCCATATGCTAATGTCGGCGATGCAGCCCTTAGTTTTGATACTGCAGAAGCTGCAATGACGTTTGCTGAAAAGCATGGCTGGCAATACGAGGTTTCACTGAAATTTTGTTATCATTTACAATTGATACAGTTTCTGGGGCTTCCTTGCTCTTAAAATTGAAACAGAAACAATTTATGTTCTGTAATCAGAGTCGCTAACTTCTATTGTAGGTTAAGAAGCGTCAGACACCAATTCTTAAGGTAAAGTTATTGTTGATTAATAACCGAAACTACTCTTTCATGCTGCCCCCGTTAGTGTTTTCAGCATATACTTGACCAAAAAAGCTTCAGGTTCTTTCTTCAACAGCCAAATTGTTTTTATCACTAATTCTTATGAGTTGGAGAAGAATTTAGAAATCACCCTATGTGGTTTGTCTACTATTTTATACACAATTCCTATGCATTTTCCTGATGATAATCCACATTGATATAATTAAATTTGTCGTAACTTTCACTTTTAGGTTCAGAGATGATTCAACATGATATCAGAATAAGATGTCAGGTATTCGAACTCCTGTAAAGTCATTTTCTCTTCAATTAATATTGATTTCCACCTATTGAGCTTTCTACAAATTTTCAAGTCCACAAGTGACTTTTGAGTTCAATGGTGATTTAACACCAAGCACCTCTAGAGATAATACCATTCCATTAAAAACTTAGATTTATTGCAAGTTTAGTCTTTGAACTTTCAAGGTCGTATTAGGTCCTTGGACCCTGACATATTCGAAAATTTTAAAAATTAGGTCCCTGAATTTTCAATTTTGTGTGTAATAGGTCCCTGACATATTTGAATTAAAAT

Coding sequence (CDS)

ATGGCGAGCTCTGTGCTACGTAGGTACAATCTTGTTCGTTGGAATCGATCAGCTTTTGTTCATTGGAGAAGACTGCTTTCCTCGAGTTCCGACTCCGTGGTGGAGTTCAAGCCAGGGGAGATCGGCATAGTCTCCGGTATCCCTGAAGAGAATCTCCGTCGTCGGGTTATAATCTACTCACCTGCTAGAACCGCCACACAGCAAGGCTCTGGGAAAGTTGGGAAATGGAAGATTAATTTTCTCTCCACACACAAGTGGGAAAACCCCTTGATGGGATGGACATCCACAGGAGACCCATATGCTAATGTCGGCGATGCAGCCCTTAGTTTTGATACTGCAGAAGCTGCAATGACGTTTGCTGAAAAGCATGGCTGGCAATACGAGGTTTCACTGAAATTTTGTTATCATTTACAATTGATACAGTTTCTGGGGCTTCCTTGCTCTTAA

Protein sequence

MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYSPARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFAEKHGWQYEVSLKFCYHLQLIQFLGLPCS

Homology

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BLAST of Lcy01g018580 vs. ExPASy Swiss-Prot
Match: Q9FJW4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FRO1 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 79/103 (76.70%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 29  SSDSVVE--FKPGEIGIVSGIPEENLRRRVIIYSPARTATQQGSGKVGKWKINFLSTHKW 88
           ++D+VVE  +K GEIG VSGIPEE+L R+VIIYSPARTATQ GSGK+GKWKINF+ST KW
Sbjct: 25  ATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTLKW 84

Query: 89  ENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFAEKHGWQYEV 130
           ENPLMGWTSTGDPYANVGD+AL+FD+ EAA +FAE+HGW Y+V
Sbjct: 85  ENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKV 127

[Close]

BLAST of Lcy01g018580 vs. ExPASy Swiss-Prot
Match: Q0MQH0 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla OX=9595 GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 40  EIGIVSGIPEENLR-RRVIIYSPARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGD 99
           +I  ++G+PEE+++ R+V I+ PAR   Q G     KWK+ F +  +WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 100 PYANVGDAALSFDTAEAAMTFAEKHGWQYEV 130
           P +N+    L+F T E A++FAEK+GW Y++
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDI 147

[Close]

BLAST of Lcy01g018580 vs. ExPASy Swiss-Prot
Match: O43181 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens OX=9606 GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 40  EIGIVSGIPEENLR-RRVIIYSPARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGD 99
           +I  ++G+PEE+++ R+V I+ PAR   Q G     KWK+ F +  +WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 100 PYANVGDAALSFDTAEAAMTFAEKHGWQYEV 130
           P +N+    L+F T E A++FAEK+GW Y++
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDI 147

[Close]

BLAST of Lcy01g018580 vs. ExPASy Swiss-Prot
Match: P0CB95 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii OX=9601 GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-18
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 40  EIGIVSGIPEENLR-RRVIIYSPARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGD 99
           +I  ++G+PEE+++ R+V I+ PAR   Q G     KWK+ F +  +WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 100 PYANVGDAALSFDTAEAAMTFAEKHGWQYEV 130
           P +N+    L+F T E A++FAEK+GW Y+V
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDV 147

[Close]

BLAST of Lcy01g018580 vs. ExPASy Swiss-Prot
Match: P0CB96 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus OX=9600 GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-18
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 40  EIGIVSGIPEENLR-RRVIIYSPARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGD 99
           +I  ++G+PEE+++ R+V I+ PAR   Q G     KWK+ F +  +WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 100 PYANVGDAALSFDTAEAAMTFAEKHGWQYEV 130
           P +N+    L+F T E A++FAEK+GW Y+V
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDV 147

[Close]

BLAST of Lcy01g018580 vs. ExPASy TrEMBL
Match: A0A6J1BQ75 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111004639 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.9e-59
Identity = 115/129 (89.15%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MASS+LR YNL R +RSAFVHWRRLL  SSDS+VEFKP EIGIVSGIPE +LRRR+IIYS
Sbjct: 1   MASSLLRSYNLARSDRSAFVHWRRLL--SSDSLVEFKPAEIGIVSGIPENHLRRRIIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDSAEAAMAFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. ExPASy TrEMBL
Match: A0A5A7V0V4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00940 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 108/129 (83.72%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MA+S+LRRYN  R   SAFVH  RLL  SSDS+VEFKPGEIG+ SGIPEE+L RRVIIYS
Sbjct: 1   MANSLLRRYNFDRSKLSAFVHCTRLL--SSDSLVEFKPGEIGLASGIPEEHLNRRVIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVG+A+L+FD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGEASLTFDSAEAAMRFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. ExPASy TrEMBL
Match: A0A1S3BAL3 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487828 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 107/129 (82.95%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MA+S+LRRYN  R   SAFVH  RLL  SSDS+VEFKPGE+G+ SGIPEE+L RRVIIYS
Sbjct: 1   MANSLLRRYNFDRSKLSAFVHCTRLL--SSDSLVEFKPGEVGLASGIPEEHLNRRVIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVG+A+L+FD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGEASLTFDSAEAAMRFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. ExPASy TrEMBL
Match: A0A0A0LKZ2 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_2G354640 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.1e-54
Identity = 109/129 (84.50%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MA+ +L RYN  R   SAFVH  RLL  SSDS+VE KPGEIGI SGIPEE+L RRVIIYS
Sbjct: 1   MANPLLHRYNFDRSRLSAFVHCTRLL--SSDSLVEVKPGEIGIASGIPEEHLHRRVIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDSAEAAMRFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. ExPASy TrEMBL
Match: A0A2P5F020 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Trema orientale OX=63057 GN=TorRG33x02_131670 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 97/141 (68.79%), Postives = 113/141 (80.14%), Query Frame = 0


Query: 8   RYNLVRWNRSAFVHWRRL--LSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYSPARTA 67
           R +L++  R     W R+  LSSS D++VE +P EIG++SGIPEE+LRRRVIIYSPARTA
Sbjct: 11  RQSLIKGARLHPYSWMRMRWLSSSEDALVELRPAEIGMISGIPEEHLRRRVIIYSPARTA 70

Query: 68  TQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFAEKHGW 127
           TQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVG+AAL+FD+ EAA  FAEK+GW
Sbjct: 71  TQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGEAALTFDSEEAAKAFAEKYGW 130

Query: 128 QYEVSLKFCYHLQLIQFLGLP 147
           QYEV       L++  F  LP
Sbjct: 131 QYEVKKPHTPLLKVCGFSSLP 151

[Close]

BLAST of Lcy01g018580 vs. NCBI nr
Match: XP_022131424.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 238.4 bits (607), Expect = 3.9e-59
Identity = 115/129 (89.15%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MASS+LR YNL R +RSAFVHWRRLL  SSDS+VEFKP EIGIVSGIPE +LRRR+IIYS
Sbjct: 1   MASSLLRSYNLARSDRSAFVHWRRLL--SSDSLVEFKPAEIGIVSGIPENHLRRRIIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDSAEAAMAFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. NCBI nr
Match: XP_038884729.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 111/129 (86.05%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MA+S+L RYN  R   SAFVH  RLL  SSDS+VEFKPGEIG+VSGIPEE++RRRVIIYS
Sbjct: 1   MANSLLGRYNFDRSKLSAFVHCTRLL--SSDSLVEFKPGEIGMVSGIPEEHIRRRVIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDSAEAAMRFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. NCBI nr
Match: KAA0060960.1 (NADH dehydrogenase (ubiquinone) iron-sulfur protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 108/129 (83.72%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MA+S+LRRYN  R   SAFVH  RLL  SSDS+VEFKPGEIG+ SGIPEE+L RRVIIYS
Sbjct: 1   MANSLLRRYNFDRSKLSAFVHCTRLL--SSDSLVEFKPGEIGLASGIPEEHLNRRVIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVG+A+L+FD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGEASLTFDSAEAAMRFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. NCBI nr
Match: XP_008444538.1 (PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 2.9e-54
Identity = 107/129 (82.95%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MA+S+LRRYN  R   SAFVH  RLL  SSDS+VEFKPGE+G+ SGIPEE+L RRVIIYS
Sbjct: 1   MANSLLRRYNFDRSKLSAFVHCTRLL--SSDSLVEFKPGEVGLASGIPEEHLNRRVIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVG+A+L+FD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGEASLTFDSAEAAMRFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. NCBI nr
Match: XP_004142898.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Cucumis sativus] >KGN62438.1 hypothetical protein Csa_018679 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 8.4e-54
Identity = 109/129 (84.50%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 1   MASSVLRRYNLVRWNRSAFVHWRRLLSSSSDSVVEFKPGEIGIVSGIPEENLRRRVIIYS 60
           MA+ +L RYN  R   SAFVH  RLL  SSDS+VE KPGEIGI SGIPEE+L RRVIIYS
Sbjct: 1   MANPLLHRYNFDRSRLSAFVHCTRLL--SSDSLVEVKPGEIGIASGIPEEHLHRRVIIYS 60

Query: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFA 120
           PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFD+AEAAM FA
Sbjct: 61  PARTATQQGSGKVGKWKINFLSTHKWENPLMGWTSTGDPYANVGDAALSFDSAEAAMRFA 120

Query: 121 EKHGWQYEV 130
           EKHGWQYEV
Sbjct: 121 EKHGWQYEV 127

[Close]

BLAST of Lcy01g018580 vs. TAIR 10
Match: AT5G67590.1 (NADH-ubiquinone oxidoreductase-related )

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 79/103 (76.70%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 29  SSDSVVE--FKPGEIGIVSGIPEENLRRRVIIYSPARTATQQGSGKVGKWKINFLSTHKW 88
           ++D+VVE  +K GEIG VSGIPEE+L R+VIIYSPARTATQ GSGK+GKWKINF+ST KW
Sbjct: 25  ATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTLKW 84

Query: 89  ENPLMGWTSTGDPYANVGDAALSFDTAEAAMTFAEKHGWQYEV 130
           ENPLMGWTSTGDPYANVGD+AL+FD+ EAA +FAE+HGW Y+V
Sbjct: 85  ENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKV 127

The following BLAST results are available for this feature:

BLAST of Lcy01g018580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJW4	1.7e-41	76.70	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidop...	[more]
Q0MQH0	1.6e-18	46.15	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla ...	[more]
O43181	1.6e-18	46.15	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sap...	[more]
P0CB95	2.0e-18	47.25	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo ab...	[more]
P0CB96	2.0e-18	47.25	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo py...	[more]

BLAST of Lcy01g018580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ75	1.9e-59	89.15	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Momordic...	[more]
A0A5A7V0V4	1.1e-54	83.72	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Cucumis ...	[more]
A0A1S3BAL3	1.4e-54	82.95	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Cucumis ...	[more]
A0A0A0LKZ2	4.1e-54	84.50	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Cucumis ...	[more]
A0A2P5F020	1.7e-47	68.79	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Trema or...	[more]

BLAST of Lcy01g018580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131424.1	3.9e-59	89.15	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Momor...	[more]
XP_038884729.1	2.0e-55	86.05	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Benin...	[more]
KAA0060960.1	2.2e-54	83.72	NADH dehydrogenase (ubiquinone) iron-sulfur protein 4 [Cucumis melo var. makuwa]	[more]
XP_008444538.1	2.9e-54	82.95	PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-...	[more]
XP_004142898.1	8.4e-54	84.50	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Cucumis sa...	[more]

BLAST of Lcy01g018580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67590.1	1.2e-42	76.70	NADH-ubiquinone oxidoreductase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038532	NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamily	GENE3D	3.30.160.190	atu1810 like domain	coord: 54..129 e-value: 7.7E-35 score: 120.7
IPR006885	NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial	PFAM	PF04800	ETC_C1_NDUFA4	coord: 55..130 e-value: 6.5E-27 score: 93.6
IPR006885	NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial	PANTHER	PTHR12219	NADH-UBIQUINONE OXIDOREDUCTASE	coord: 9..132
None	No IPR available	PANTHER	PTHR12219:SF23	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 4, MITOCHONDRIAL-LIKE	coord: 9..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g018580.1	Lcy01g018580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respirasome
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H